• Journal of Soil and Groundwater Environment
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• v.11 no.1
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• pp.1-6
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• 2006

The analysis of functional population and its dynamics on the environment is essential for understanding bioremediation in environment. Here, we report a method for oligonucleotide microarray for the monitoring of aliphatic and aromatic degradative genes. This microarray contained 15 unique and group-specific probes which were based on 100 known genes involved pathways in biodegradation. Hybridization specificity tests with pure cultures, strain Pseudomonas aeruginosa KCTC 1636 indicated that the designed probes on the arrays appeared to be specific to their corresponding target genes. It was found that the presence of 8 genes encoding alkane, naphthalene, biphenyl, pyrene (PAH ring-hydroxylating) degradation pathway could be detected in oil contaminated soil sample. Therefore, the findings of this study strongly suggest that oligonucleotide microarray is an effective diagnostic tool for evaluating biodegradation capability in oil contaminated subsurface environment.

• Journal of Korea Soil Environment Society
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• v.2 no.3
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• pp.23-30
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• 1997

The purpose of this study was to evaluate effects of solids content and mixing speed in treatment of petroleum hydrocarbon contaminated soils using a slurry-phase bioreactor. Performance results on slurry-phase bioremediation of diesel fuel contaminated soil were generated at the bench-scale level. The fate of TPH(Total Petroleum Hydrocarbon) was evaluated in combination with biological treatment. Abiotic and biotic fate of the TPH were determined using soil not previously exposed to compounds in diesel fuel. The reactor volume for given throughput can be reduced by maximizing the solids content. Applications of 50% and 20% solids content(dry weight basis) were showed a little difference(57.5% : 61.6%) in biological TPH removal rate each other. Mixing and particle suspension are critical to desorption and biological degradation. In this standpoint, this study was performed using two mixing speed. When the reactor was operated at 70rpm, it had a better result in the particle suspension and TPH removal rate than the reactor with mixer rotated at 20rpm. In the reactor applied 20rpm, it was resulted in failure of particle suspension.

• Journal of Microbiology and Biotechnology
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• v.24 no.4
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• pp.534-544
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• 2014

The effects of microbial iron reduction and oxidation on the immobilization and mobilization of copper were investigated in a high concentration of sulfate with synthesized Fe(III) minerals and red earth soils rich in amorphous Fe (hydr)oxides. Batch microcosm experiments showed that red earth soil inoculated with subsurface sediments had a faster Fe(III) bioreduction rate than pure amorphous Fe(III) minerals and resulted in quicker immobilization of Cu in the aqueous fraction. Coinciding with the decrease of aqueous Cu, $SO_4{^{2-}}$ in the inoculated red earth soil decreased acutely after incubation. The shift in the microbial community composite in the inoculated soil was analyzed through denaturing gradient gel electrophoresis. Results revealed the potential cooperative effect of microbial Fe(III) reduction and sulfate reduction on copper immobilization. After exposure to air for 144 h, more than 50% of the immobilized Cu was remobilized from the anaerobic matrices; aqueous sulfate increased significantly. Sequential extraction analysis demonstrated that the organic matter/sulfide-bound Cu increased by 52% after anaerobic incubation relative to the abiotic treatment but decreased by 32% after oxidation, indicating the generation and oxidation of Cu-sulfide coprecipitates in the inoculated red earth soil. These findings suggest that the immobilization of copper could be enhanced by mediating microbial Fe(III) reduction with sulfate reduction under anaerobic conditions. The findings have an important implication for bioremediation in Cu-contaminated and Fe-rich soils, especially in acid-mine-drainage-affected sites.

• Mycobiology
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• v.38 no.4
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• pp.238-248
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• 2010

This review provides background information on the importance of bioremediation approaches. It describes the roles of fungi, specifically white rot fungi, and their extracellular enzymes, laccases, ligninases, and peroxidises, in the degradation of xenobiotic compounds such as single and mixtures of pesticides. We discuss the importance of abiotic factors such as water potential, temperature, and pH stress when considering an environmental screening approach, and examples are provided of the differential effect of white rot fungi on the degradation of single and mixtures of pesticides using fungi such as Trametes versicolor and Phanerochaete chrysosporium. We also explore the formulation and delivery of fungal bioremedial inoculants to terrestrial ecosystems as well as the use of spent mushroom compost as an approach. Future areas for research and potential exploitation of new techniques are also considered.

• Journal of Microbiology
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• v.41 no.2
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• pp.165-168
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• 2003

We report a new PCNB-degrading strain (PCNB-2) that is able to utilize and grow on PCNB (100 ppm) as a sole carbon source. This strain was identified as Alcaligenes xylosoxidans based upon 16S rDNA sequence analysis, API 20 NE tests and cell membrane lipid analysis. The new PCNB degrader Alcaligenes xylosoxidans PCNB-2 could find use in bioremediation of PCNB, which is environmentally persistent.

• Journal of Soil and Groundwater Environment
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• v.11 no.6
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• pp.43-52
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• 2006

Effectiveness of activated soil containing directly enriched atrazine-degrading soil microorganisms as an inoculant to bioaugment degradation of atrazine in soils was investigated. A Wooster silt loam (Typic Fragiudalf) was spiked with atrazine at a rate of 4 mg/kg soil three successive times to create activated soil. Atrazine degradation was significantly enhanced (p < 0.05) after the first treatment. After the second treatment, there was an increase in the number, based on MPN, of microorganisms utilizing atrazine as a C- and N-source by 3 logs and 1 log of magnitude, respectively. Inoculation of typical agricultural soils collected from Ohio with activated soil at a rate as low as 0.5% reduced the extractable atrazine remaining in soils to the level below 2% of that initially recovered (initially added at a rate of 4 mg/kg soil) after 4 days. Inoculation at a higher rate was required to achieve the same result in soils with non-typical properties (pH of 4.5 or organic matter of 43% w/w). Activated soil was stable, in terms of atrazine degradation activity, at least up to 6 months when it was kept at low temperature (< $10^{\circ}C$) and moistened (water content above 15%). The results of this study indicate that microorganisms capable of degrading atrazine are relatively easily enriched in soil to create activated soil. Use of activated soil can be a practical option for bioremediation of contaminated soils.

• Proceedings of the Korean Society of Soil and Groundwater Environment Conference
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• 2004.04a
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• pp.131-134
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• 2004

Several physical and chemical methods have been used for remediation contaminated by oils. However the cost was very high and secondary pollution rose during treating. The purpose of this study was to comprision TPH (total petroleum hydrocarbon) removal from artificially contaminated soil by diesel with and without seeding anaerobic digested sludge. After 120 days of overall at 35$^{\circ}C$, removal efficiency of TPH with seeding sludge was 2-3 times higher than blank. Also, the more amount seeding sludge, TPH removal efficiency and CH$_4$ content more obtained. It was sad that seeding of anaerobic digested sludge was a good method for enhancing TPH removal efficiency without increasing operating cost. Sulfate, nitrate-reducing, methanogenic condition were evaluated for alkane, isoprenoid as target contaminated soil.

• Proceedings of the Korean Society of Soil and Groundwater Environment Conference
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• 2000.05a
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• pp.20-23
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• 2000

The use of electrokinetic injection and transport for the distribution of an NAPLs-degrading microorganism in a sandy soil bed was studied. After the injection of the cell into cathode side of bed, an electric current was applied. The transport of cell though the sandy soil was achieved by electokinetics, mainly by electrophoresis, The pH control in electrode chamber plays un important role to achieve desirable cell transport because H$^{+}$ generated at anode is toxic or inhibits the transport of cells. Electokinetic distribution rate of bacterial cells changed depending on the applied electric current and pH. The degradation of diesel by electrokinetically transport cells were monitored.d.

• Proceedings of the Korean Society of Soil and Groundwater Environment Conference
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• 1998.11a
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• pp.137-141
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• 1998

A chemical has been aging in soil environment is more less bioavailable than freshly added chemical. The amount of bioavailability of the aged chemical is different by bacterial strains. The difference could be depend on physiochemical properties of each strain. Phenanthrene was employed as an aged chemical. Seven bacteria were isolated from activated sludge and petroleum disposed soil. These strains were able to degrade phenanthrene and to grow using phenanthrene as a sole carbon source. According to the result of materialization and chemical extraction experiment, the bioavailable amount of aged phenanthrene which has been aged in Lima loam is different by each bacteria. Several physiochemical properties of each strain were tested to certify correlation with their different amount of bioavailability.

• Proceedings of the Korean Society of Soil and Groundwater Environment Conference
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• 2000.11a
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• pp.167-170
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• 2000

The purpose of study is to evaluate the effects of physical parameters on diesel biodegradation in diesel contaminated soil. The parameters applied are concentration, temperature, moisture contents, electron acceptor(O$_2$). The results of this study showed that diesel were degraded faster at high temperature and moisture contents than at low temperature and moisture content. However concentration effect study indicates that diesel were more faster degraded at low concentration than at high concentration. The results of electron acceptor test showed concentration of oxygen did not affect the biodegradation rate of diesel in oxygen condition(10, 20%) of this study.