• Research in Plant Disease
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• v.10 no.4
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• pp.310-312
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• 2004

Pseudomonas syringae pv. actinidiae is the causative agent of bacterial canker in kiwifruit. A nested PCR detection method that uses primers designed from the cfl gene, involved in production of the phytotoxin coronatine, was applied on soil samples. These primers yielded 665 and 310-bp fragments in consecutive PCR amplification step with DNA from soil inoculated with Korean strain of P. syringae pv. actinidiae. This system was applied to survey soil samples from a kiwifruit orchard destroyed by bacterial canker. A specific 310-bp PCR product was obtained from all six samples of soil tested.

• Geomechanics and Engineering
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• v.16 no.4
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• pp.435-448
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• 2018

In order to make reliable earthquake-resistant design of civil engineering structures, one of the most important considerations in a region with high seismicity is to pay attention to the local soil condition of regions. It is aimed in the current study at specifying dynamic soil characteristics of Kirikkale city center conducting the 1-D equivalent linear and non-linear site response analyses. Due to high vulnerability and seismicity of the city center of Kirikkale surrounded by active many faults, such as the North Anatolian Fault (NAF), the city of Kirikkale is classified as highly earthquake-prone city. The first effort to determine critical site response parameter is to perform the seismic hazard analyses of the region through the earthquake record catalogues. The moment magnitude of the city center is obtained as $M_w=7.0$ according to the recorded probability of exceedance of 10% in the last 50 years. Using the data from site tests, the 1-D equivalent linear (EL) and nonlinear site response analyses (NL) are performed with respect to the shear modulus reduction and damping ratio models proposed in literature. The important engineering parameters of the amplification ratio, predominant site period, peak ground acceleration (PGA) and spectral acceleration values are predicted. Except for the periods between the period of T=0.2-1.0 s, the results from the NL are obtained to be similar to the EL results. Lower spectral acceleration values are estimated in the locations of the city where the higher amplification ratio is attained or vice-versa. Construction of high-rise buildings with modal periods higher than T=1.0 s are obtained to be suitable for the city of Kirikkale. The buildings at the city center are recommended to be assessed with street survey rapid structural evaluation methods so as to mitigate seismic damages. The obtained contour maps in this study are estimated to be effective for visually characterizing the city in terms of the considered parameters.

• Geomechanics and Engineering
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• v.20 no.2
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• pp.131-146
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• 2020

Evaluation of earthquake impacts in settlements with a high risk of earthquake occurrence is important for the determination of site-specific dynamic soil parameters and earthquake-resistant structural planning. In this study, dynamic soil properties of Karliova (Bingol) city center, located near to the intersection point of the North Anatolian Fault Zone and the East Anatolian Fault Zone and therefore having a high earthquake risk, were investigated by one-dimensional equivalent linear site response analysis. From ground response analyses, peak ground acceleration, predominant site period, 0.2-sec and 1-sec spectral accelerations and soil amplification maps of the study area were obtained for both near-field and far-field earthquake effects. The average acceleration spectrum obtained from analysis, for a near-field earthquake scenario, was found to exceed the design spectra of the Turkish Earthquake Code and Eurocode 8. Yet, the average acceleration spectrum was found to remain below the respective design spectra of the two codes for the far-field earthquake scenario. According to both near- and far-field earthquake scenarios in the study area, the low-rise buildings with low modal vibration durations are expected to be exposed to high spectral acceleration values and high-rise buildings with high modal vibration durations will be exposed to lower spectral accelerations. While high amplification ratios are observed in the north of the study area for the near-distance earthquake scenario, high amplification ratios are observed in the south of the study area for the long-distance earthquake scenario.

• Geotechnical Engineering
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• v.9 no.1
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• pp.7-20
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• 1993

The first Korean earthquake resistant design code was enacted in 1988. In the code, the soil factor which takes into account both the soil amplification factor and the soil -structare interaction effect is divided into three groups : soil factor, 5 : 1.0, 1.2 and 1.5. In order to assist in choosing the soil factors appropriately in the earthquake resistant design, the local site effects on the based shear force induced by earthquakes are considered in depth for typical soil conditions in Korea. The depth of the alluvial and/or weathered zone is usually not deep and the fresh rock is found at depth shallower than 20 meters, and even at about 10 meters around Seoul. One dimensional wave propagation theory and the elastic half space method are used to obtain the soil -structure interaction effect as well as the soil amplification effect. The kinematic interaction effect due to scattering of waves by pile foundation is also considered. Finally, the soil factor is recommended for each soil condition from loose state to dense, and also from shallow soil depth to deep, so that the designer can choose the factor with-out difficulty.

• Korean Journal Plant Pathology
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• v.14 no.6
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• pp.589-593
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• 1998

DNA amplification by polymerase chain reaction (PCR) was used to specifically detect Plasmodiophora brassicae, causing clubroot of crucifers. On the basis of DNA sequence informations, an oligonucleotide primer set specific for the pathogen was designed form small subunit gene (18S-like) and internal transcribed spacer (ITS) region of ribosomal DNA. Primer ITS 5/PB-C produced an amplification product of approximately 520 bp in length with DNA from P. brassicae. However, no amplification product was produced with DNAs from several soil-borne fungi, Didymella bryoniae and Rhizopus stolonifer. Using these primers, the clubroot pathogen was readily detected from infected roots of crucifers, but not from healthy roots. Southern hybridization analysis further confirmed that the amplification product was originated from P. brassicae.

• Korean Journal of Food Science and Technology
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• v.32 no.2
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• pp.439-443
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• 2000

In order to evaluate the safety of greenhouse horticulture products in Korea, we carried out this work by screening of Fusarium species, which produce deoxynivalenol (DON) from greenhouse horticulture in Western Gyeongnam and Northern Gyeongbuk, Korea. For this study, high sensitive enzyme-linked immunosorbent assay, ALP/NADP method, was applied to detection of DON by enzyme amplification system. From 192 samples of greenhouse horticulture soil and its products, 103 isolates of Fusarium species were obtained. The isolates were cultured at 28C for 15 days and the cultured mediums were extracted by ethyl acetate. The production of DON was verified by thin layer chromatography (TLC). As the results of TLC, 8 strains were identified as DON producing strain. We screened potential producers of DON by ALP/NADP. The levels of DON production were shown from 0.007 to 1.21 g/ml of YES medium. The maximum DON producing strain No. 32-D-3 was isolated from soil in Namhae, Korea. In conclusion, the above results indicate that DON producing fungi contaminated greenhouse horticulture products in Korea. Therefore, further studies are required to accumulate more detailed data about the contamination of DON in various cereals.

• KSCE Journal of Civil and Environmental Engineering Research
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• v.35 no.4
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• pp.759-768
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• 2015

The ground motions of large dimensional structures such as long span bridges at different stations during an earthquake, are inevitably different, which is known as the ground motion spatial variation effect. There are many causes that may result in the spatial variability in seismic ground motion, e.g., the wave passage effect due to the different arrival times of waves at different locations; the loss of coherency due to seismic waves scattering in the heterogeneous medium of the ground; the site amplification effect owing to different local soil properties. In previous researches, the site amplification effects have not been considered or considered by a single-layered soil model only. In this study, however, the ground motion amplification and filtering effects are evaluated by multi-layered soil model. Spatially varying ground motion at the sites with different number of layers, depths, and soil characteristics are generated and the variation characteristics of ground motion time histories according to the correlation of coherency loss function and soil conditions are evaluated. For the bridge system composed of two unit bridges, seismic behavior characteristics are analyzed using the generated seismic waves as input ground motion. Especially, relative displacement due to coherency loss and site effect which can cause the unseating and pounding between girders are evaluated. As a result, considering the soil conditions of each site are always important and should not be neglected for an accurate structural response analysis.

• Journal of the Korean Geotechnical Society
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• v.30 no.10
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• pp.67-80
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• 2014

The thickness of permafrost in Eastern Siberia is from 200 to 500 meters. The seasonally frozen layer can vary from 0 to 4m depending on ground temperature and its location. The shear wave velocity varies from 80m/s in summer to 1500m/s in winter depending on soil type. When melted, large impedence will occur due to the difference between the shear wave velocity of seasonally frozen soil and that of permafrost layer. Large displacement may occur at the boundary of the melted and the frozen layer, and this phenomenon should be considered in a seismic design. In this research, one-dimensional equivalent linear analyses were performed to investigate the effects of the seasonally frozen layer on ground amplification characteristics. Soil profiles of Yakutsk and Chara in Eastern Siberia were selected from geotechnical reports. 20 recorded ground motions were used to evaluate the effect of input motions. As the thickness of seasonally frozen layer and the difference in the shear wave velocity increases, the amplification is shown to increase. Peat, very soft organic soil widely distributed throughout Eastern Siberia, is shown to cause significant ground motion amplification. It is therefore recommended to account for its influence on propagated motion.

• Earthquakes and Structures
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• v.10 no.5
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• pp.1013-1032
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• 2016

Several historical earthquakes demonstrated that local amplification and soil nonlinearity are responsible for the uneven damage pattern of the structures and lifelines. On April $25^{th}$ 2015 the Mw7.8 Gorkha earthquake stroke Nepal and neighboring countries, and caused extensive damages throughout Kathmandu valley. In this paper, comparative studies between equivalent-linear and nonlinear seismic site response analyses in five affected strategic locations are performed in order to relate the soil behavior with the observed structural damage. The acceleration response spectra and soil amplification are compared in both approaches and found that the nonlinear analysis better represented the observed damage scenario. Higher values of peak ground acceleration (PGA) and higher spectral acceleration have characterized the intense damage in three study sites and the lower values have also shown agreement with less to insignificant damages in the other two sites. In equivalent linear analysis PGA varies between 0.29 to 0.47 g, meanwhile in case of nonlinear analysis it ranges from 0.17 to 0.46 g. It is verified from both analyses that the PGA map provided by the USGS for the southern part of Kathmandu valley is not properly representative, in contrary of the northern part. Similarly, the peak spectral amplification in case of equivalent linear analysis is estimated to be varying between 2.3 to 3.8, however in case of nonlinear analysis, the variation is observed in between 8.9 to 18.2. Both the equivalent linear and nonlinear analysis have depicted the soil fundamental period as 0.4 and 0.5 sec for the studied locations and subsequent analysis for seismic demands are correlated.

• Journal of the Earthquake Engineering Society of Korea
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• v.22 no.7
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• pp.391-399
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• 2018

The site coefficients in the common requirements for seismic design codes, which were promulgated in 2017, were reevaluated and the standard design spectrum for soil sites were newly proposed in order to ensure the consistency of the standard design spectra for rock and soil sites specified in the common requirements. Using the 55 ground motions from domestic and overseas intraplate earthquakes, which were used to derive the standard design spectrum for rock sites, as rock outcropping motions, site response analyses of Korean soil were performed and its ground-motion-amplification was characterized. Then, the site coefficients for soil sites were reevaluated. Compared with the existing site coefficients, the newly proposed short-period site coefficient $F_a$ increased and the long-period site coefficient $F_v$ decreased overall. A new standard design spectrum for soil sites was proposed using the reevaluated site coefficients. When compared with the existing design spectrum, it could be seen that the proposed site coefficients and the standard design spectrum for soil sites were reasonably derived. They reflected the short-period characteristics of earthquake and soil in Korea.