• Biomedical Science Letters
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• v.27 no.4
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• pp.255-263
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• 2021

Human Astrovirus (HuAstV) is an important gastrointestinal pathogen that is frequently reported worldwide. Monitoring of contaminated groundwater has been suggested since HuAstV is transmitted through the fecal-oral route. This study developed a test method based on conventional reverse transcription (RT)-nested polymerase chain reaction (PCR) that involves SL^® non-specific reaction inhibitor for unknown non-specific amplification taking place in the groundwater environment. An optimal method for detecting HuAstV in groundwater sample through analysis and comparison against conventionally reported method was also suggested. The developed method enabled the production of nested PCR amplicon of 630 nt, which is a sufficient length for similarity analysis based on sequencing and genotyping. Amplicons suspected to be HuAstV were amplified in two out of the twenty groundwater samples collected in Korea, presenting 99.77% and 99.73% similarity against HuAstV 1 strain lhar/2011/kor (JN887820.1) in sequencing, respectively. These amplicons were identified as HuAstV 1.

• Journal of the Society of Naval Architects of Korea
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• v.59 no.2
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• pp.72-79
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• 2022

Deep-learning-based Super-Resolution (SR) methods were evaluated to reconstruct pressure fields with a high resolution from low-resolution images taken from a coarse grid simulation. In addition to a canonical SRCNN(super-resolution convolutional neural network) model, two modified models from SRCNN, adding an activation function (ReLU or Sigmoid function) to the output layer, were considered in the present study. High resolution images obtained by three models were more vivid and reliable qualitatively, compared with a conventional super-resolution method of bicubic interpolation. A quantitative comparison of statistical similarity showed that SRCNN model with Sigmoid function achieved best performance with less dependency on original resolution of input images.

• Nutrition Research and Practice
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• v.7 no.1
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• pp.66-71
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• 2013

This study analyzes important factors of foodservice in school through comparison of students' satisfaction of using foodservice in Korea and US in order to meet students' expectations. The survey was composed of 4 categories including menu, service, hygiene, and facility and it was carried out in both countries to evaluate satisfaction. First, comparison of satisfaction between two countries was made using t-test. Secondly, multiple regression was performed to identify factors affecting satisfaction. As a result Korean students were more satisfied than American students in all aspects. However, regardless of nationality, the top three factors affecting the students' satisfaction were the same. The predictors were food taste (Korean 0.375 and American 0.350), menu variety (Korean 0.305 and American 0.278), and service line (Korean 0.226 and American 0.192). Despite the similarity of the predicators, it can be concluded that the difference in satisfaction level between the two nationscan be explained by the approaches to create comfortable and acceptable changes in schools' foodservice. Korea has been increasing the foodservice quality based on their objectives to provide students comfortable and positive environment when eating nutritious meals. However, US have made their main objectives on making changes to decrease youth obesity. Foodservice improvements according to continuous evaluations and surveys are necessary in order to increase students' satisfaction.

• Journal of Information Processing Systems
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• v.8 no.3
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• pp.389-398
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• 2012

Texture is an important visual feature for image analysis. Many approaches have been proposed to model and analyze texture features. Although these approaches significantly contribute to various image-based applications, most of these methods are sensitive to the changes in the scale and orientation of the texture pattern. Because textures vary in scale and orientations frequently, this easily leads to pattern mismatching if the features are compared to each other without considering the scale and/or orientation of textures. This paper suggests an Orientation Matching Scheme (OMS) to ease the problem of mismatching rotated patterns. In OMS, a pair of texture features will be compared to each other at various orientations to identify the best matched direction for comparison. A database including rotated texture images was generated for experiments. A synthetic retrieving experiment was conducted on the generated database to examine the performance of the proposed scheme. We also applied OMS to the similarity computation in a K-means clustering algorithm. The purpose of using K-means is to examine the scheme exhaustively in unpromising conditions, where initialized seeds are randomly selected and algorithms work heuristically. Results from both types of experiments show that the proposed OMS can help improve the performance when dealing with rotated patterns.

• KIISE Transactions on Computing Practices
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• v.23 no.4
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• pp.250-255
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• 2017

Given the explosion of genomic data and expansion of applications such as precision medicine, the importance of efficient genome-database management continues to grow. Traditional compression techniques may be effective in reducing the size of a database, but a new challenge follows in terms of performing operations such as comparison and searches on the compressed database. Based on that many genome databases typically have numerous duplicated or similar sequences, and that the runtime of genome analyses is normally proportional to the number of sequences in a database, we propose a technique that can compress a genome database by eliminating similar entries from the database. Through our experiments, we show that we can remove approximately 84% of sequences with 1% similarity threshold, accelerating the downstream classification tasks by approximately 10 times. We also confirm that our compression method does not significantly affect the accuracy of taxonomy diversity assessments or classification.

• Journal of the Korea Organic Resources Recycling Association
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• v.12 no.1
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• pp.67-74
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• 2004

A bacterium which grow on phenol as an only carbon and energy source was isolated from the sewage sludge at Nangi municipal wastewater treatment plant in Seoul. This bacterium was found to be a Gram negative rod with high motility, and well grew on 0.05%, 0.1%, and 0.15% of phenol. No matching strain was found from the result of the BBL test. Phylogenetic analysis of the strain by comparison of the 16s-rDNA has revealed that this bacterium has 99% of similarity with Stenotrophomonas maltophilia strain of Xanthomonas group, which belongs t the Gamma (${\gamma}$) subdivision of Proteobacteria. This strain has also shown 98% of similarity with nitrogen fixing bacterium MAGDE3 and Pseudomonas cissicola strain, and 97% of similarity with Stenotrophomonas sp. LMG198 and Xanthomonas cucurbitae.

• Journal of the Korea Society for Simulation
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• v.15 no.3
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• pp.115-124
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• 2006

XML is rapidly becoming technologies for information exchange and representation. It causes many research issues such as semantic modeling methods, security, conversion far interoperability with other models, and so on. Especially, the most important issue for its practical application is how to achieve the interoperability between XML model and relational model. Until now, many suggestions have been proposed to achieve it. However several problems still remain. Most of all, the exiting methods do not consider implicit referential integrity relations, and it causes incorrect data delivery. One method to do this has been proposed with the restriction where one semantic is defined as only one same name in a given database. In real database world, this restriction cannot provide the application and extensibility. This paper proposes a noble conversion (RDB-to-XML) algorithm based on the similarity checking technique. The key point of our method is how to find implicit referential integrity relations between different field names presenting one same semantic. To resolve it, we define an enhanced implicity referentiai integrity relations extraction algorithm based on a widely used ontology, WordNet. The proposed conversion algorithm is more practical than the previous-similar approach.

• Korean Journal of Veterinary Service
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• v.32 no.4
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• pp.325-334
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• 2009

Salmonella spp. are the important pathogens both economically and clinically in animals as well as human. Some of them have highly zoonotic potentials even though they are asymptomatic in animals. Therefore, the prevalence of Salmonella spp. in animals is highly concerned for human health. The present study was carried out to investigate the prevalence, antimicrobial resistance and PFGE patterns of Salmonella spp. isolated from chickens at slaughterhouse in Incheon area. The overall isolation rate of Salmonella spp. from cloaca and cecum specimens was 7.3 % (37/510). Thirty seven isolates of Salmonella spp. were identified to 5 serotypes; S. Enteritidis, S. Newport, S. Typhimurium, S. Gallinarum, and S. Derby with prevalence of 46.0%, 40.5%, 8.1%, 2.7%, and 2.7%, respectively. Resistance to nalidixic acid was found in 97.3% of Salmonella spp. isolated, followed by streptomycin (16.2%), tetracycline (16.2%), ampicillin (5.4%). Only 6 isolates (16.2%) showed resistance to more than two antimicrobials. In PFGE analysis of chicken and human isolates with Xba I, S. Enteritidis isolates from chicken showed very high similarity over 82.8% and also the similarity was very high in the comparison with human isolates. However, the higher similarity (100%) was observed among chicken isolates of S. Typhimurium. These results suggest the close genetic relatedness of Salmonella spp. isolated from chickens with human.

• The Journal of Korean Institute of Communications and Information Sciences
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• v.27 no.6A
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• pp.584-591
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• 2002

In this paper, we proposed a b1ocking artifact reduction algorithm using similarity and linear combination between blocks. In the proposed method, all of the blocks are classified into low frequency block and high frequency block according to the their DCT coefficients. And we defined range block which shows blocking artifacts, as block centered to block boundary and defied domain block as similar block with range block within search range. In the search procedure, we used sub-block's property of range block and similarity for more accurate searching. Finally blocking artifact reduction algorithm is performed using linear combination between searched domain block and blocky range block. The performance of the proposed method is investigated by computer simulation in comparison with the traditional methods. In the experimental results, Ire confirmed the better performance in the subjective by 0.04∼0.4 dB and objective image quality.

• Asian-Australasian Journal of Animal Sciences
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• v.15 no.4
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• pp.470-476
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• 2002

Random amplified polymorphic DNA (RAPD) analysis based on numerous polymorphic bands have been used to investigate genetic similarity and diversity among and within two cultured and wild populations represented by the species crucian carp (Carassius carassius). From RAPD analysis using five primers, a total of 442 polymorphic bands were obtained in the two populations and 273 were found to be specific to a wild population. 169 polymorphic bands were also produced in wild and cultured population. According to RAPD-based estimates, the average number of polymorphic bands in the wild population was approximately 1.5 times as diverse as that in cultured. The average number of polymorphic bands in each population was found to be different and was higher in the wild than in the cultured population. Comparison of banding patterns in the cultured and wild populations revealed substantial differences supporting a previous assessment that the populations may have been subjected to a long period of geographical isolation from each other. The values in wild population altered from 0.21 to 0.51 as calculated by bandsharing analysis. Also, the average level of bandsharing values was $0.40{\pm}0.05 $ in the wild population, compared to $0.69{\pm}0.08$ in the cultured. With reference to bandsharing values and banding patterns, the wild population was considerably more diverse than the cultured. Knowledge of the genetic diversity of crucian carp could help in formulating more effective strategies for managing this aquacultural fish species and also in evaluating the potential genetic effects induced by hatchery operations.