• Title/Summary/Keyword: sequence retrieval

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A Study on Web Services for Sequence Similarity search in the Workflow Environment (워크플로우 환경에서의 대규모 서열 유사성 검색 웹 서비스에 관한 연구)

  • Jun, Jin-Young
    • Journal of the Korea Society of Computer and Information
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    • v.13 no.6
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    • pp.41-49
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    • 2008
  • In recent years, a life phenomenon using a workflow management tool in bioinformatics has been actively researched. Workflow management tool is the base which enables researchers to collaborate through the re-use and sharing of service, and a variety of workflow management tools including MyGrid project's Taverna, Kepler and BioWMS have been developed and used as the open source. This workflow management tool can model and automate different services in spatially-distant area in one working space based on the web service technology. Many tools and databases used in the bioinformatics are provided in the web services form and are used in the workflow management tool. In such the situation, the web services development and stable service offering for a sequence similarity search which is basically used in the bioinformatics can be essential in the bioinformatics field. In this paper, the similarity retrieval speed of biology sequence data was improved based on a Linux cluster, and the sequence similarity retrieval could be done for a short time by linking with the workflow management tool through developing it in the web services.

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Hybrid Video Information System Supporting Content-based Retrieval and Similarity Retrieval (비디오의 의미검색과 유사성검색을 위한 통합비디오정보시스템)

  • Yun, Mi-Hui;Yun, Yong-Ik;Kim, Gyo-Jeong
    • The Transactions of the Korea Information Processing Society
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    • v.6 no.8
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    • pp.2031-2041
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    • 1999
  • In this paper, we present the HVIS (Hybrid Video Information System) which bolsters up meaning retrieval of all the various users by integrating feature-based retrieval and annotation-based retrieval of unformatted formed and massive video data. HVIS divides a set of video into video document, sequence, scene and object to model the metadata and suggests the Two layered Hybrid Object-oriented Metadata Model(THOMM) which is composed of raw-data layer for physical video stream, metadata layer to support annotation-based retrieval, content-based retrieval, and similarity retrieval. Grounded on this model, we presents the video query language which make the annotation-based query, content-based query and similar query possible and Video Query Processor to process the query and query processing algorithm. Specially, We present the similarity expression to appear degree of similarity which considers interesting of user. The proposed system is implemented with Visual C++, ActiveX and ORACLE.

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Efficient Retrieval of Similar Shape-Based Subsequences for Sequence Database (시퀀스 데이터베이스를 위한 모양기반의 유사 부분시퀀스 검색)

  • 이정화;윤지희
    • Proceedings of the Korean Information Science Society Conference
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    • 1999.10a
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    • pp.340-342
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    • 1999
  • 시퀀스 데이터(sequence data)에서는 각 데이터 값보다는 전후 그들 사이의 변화추세 등이 더 큰 정보로 작용하는 것이 일반적이다. 본문에서는 시퀀스 데이터베이스를 대상으로 하여 주어진 시퀀스 패턴과 모양이 유사한 모든 부분시퀀스를 검색해 내는 새로운 방식을 제안한다. 본 방식에서는 시퀀스 데이터의 모양 추출을 위한 데이터 변환, 유사 모양 패턴 클러스터링, 새로운 유사도 계산 방식 등을 도입함으로써, 기존의 방식이 매우 제한적인 패턴만을 유사패턴으로 간주하던 것에 비하여, 패턴이 데이터축 혹은 타임축으로 각각 확대, 축소, 이동된 경우에도 유사패턴으로 검색이 가능하다.

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Multi-load Automated Storage/Retrieval Systems (복수운반형 자동창고)

  • Rim, Suk-Chui;Kim, Yong-Jin
    • Journal of Korean Institute of Industrial Engineers
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    • v.21 no.2
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    • pp.239-254
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    • 1995
  • Automated Storage/Retrieval (AS/R) systems have been used mostly in manufacturing or distribution industry in order to store or retrieve palletized items automatically. Since the items ore heavy or bulky, only one pallet at a time is moved by the stacker crane In this study, however, we introduce the "multi -load" AS/R system in which the items to be stored are data storage devices of equal size such as video tape or compact disc. Since the items are small and light multiple items can be stored and retrieved in each trip by using a magazine and a robot arm mounted on the crane Given the magazine capacity, and the locations of retrieval items and empty cells in the rack, the throughput of the multi-load AS/R system will depend on the selection of storage locations and the sequence of visits. We propose four heuristic algorithms for the multi-command. Computer simulation is used to evaluate the four algorithms in terms of throughput and number of back tracking of the crane.

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Natural Language based Video Retrieval System with Event Analysis of Multi-camera Image Sequence in Office Environment (사무실 환경 내 다중카메라 영상의 이벤트분석을 통한 자연어 기반 동영상 검색시스템)

  • Lim, Soo-Jung;Hong, Jin-Hyuk;Cho, Sung-Bae
    • 한국HCI학회:학술대회논문집
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    • 2008.02a
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    • pp.384-389
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    • 2008
  • Recently, the necessity of systems which effectively store and retrieve video data has increased. Conventional video retrieval systems retrieve data using menus or text based keywords. Due to the lack of information, many video clips are simultaneously searched, and the user must have a certain level of knowledge to utilize the system. In this paper, we suggest a natural language based conversational video retrieval system that reflects users' intentions and includes more information than keyword based queries. This system can also retrieve from events or people to their movements. First, an event database is constructed based on meta-data which are generated by domain analysis for collected video in an office environment. Then, a script database is also constructed based on the query pre-processing and analysis. From that, a method to retrieve a video through a matching technique between natural language queries and answers is suggested and validated through performance and process evaluation for 10 users The natural language based retrieval system has shown its better efficiency in performance and user satisfaction than the menu based retrieval system.

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Content-Based Image Retrieval Algorithm Using HAQ Algorithm and Moment-Based Feature (HAQ 알고리즘과 Moment 기반 특징을 이용한 내용 기반 영상 검색 알고리즘)

  • 김대일;강대성
    • Journal of the Institute of Electronics Engineers of Korea SP
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    • v.41 no.4
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    • pp.113-120
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    • 2004
  • In this paper, we propose an efficient feature extraction and image retrieval algorithm for content-based retrieval method. First, we extract the object using Gaussian edge detector for input image which is key frames of MPEG video and extract the object features that are location feature, distributed dimension feature and invariant moments feature. Next, we extract the characteristic color feature using the proposed HAQ(Histogram Analysis md Quantization) algorithm. Finally, we implement an retrieval of four features in sequence with the proposed matching method for query image which is a shot frame except the key frames of MPEG video. The purpose of this paper is to propose the novel content-based image retrieval algerian which retrieves the key frame in the shot boundary of MPEG video belonging to the scene requested by user. The experimental results show an efficient retrieval for 836 sample images in 10 music videos using the proposed algorithm.

An efficient storing method of multiple streams based on fixed blocks in disk parititions (디스크 파티션내 고정 블록에 기반한 다중 스트림의 효율적 저장 방식)

  • 최성욱;박승규;최덕규
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.22 no.9
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    • pp.2080-2089
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    • 1997
  • Recent evolution in compute technology makesthe multimedia processing widely availiable. Conventional storage systems do not meet the requirements of multimedia data. Several approaches were suggested to improve disk storing methods for them. Bocheck proposed a disk partitioning technique for multiple steams assuming that all steams have same retrieval intervals with the same amount data for each access. While Bocheck's one provides a good method for same period, it does not consider the case of different periods of continous media streams. This paper proposes a new partitioning technique in which a fixed number of blocks are assigned for stresms with different retrieval periodicity. The analysis shows this problem is the same as the one scheduling the steams into a given sequence. The simulation was done to compare the proposed m-sequence merge method with the conventional Scan-EDF and Partitioning methods.

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Implementation of Search Method based on Sequence and Adjacency Relationship of User Query (사용자 검색 질의 단어의 순서 및 단어간의 인접 관계에 기반한 검색 기법의 구현)

  • So, Byung-Chul;Jung, Jin-Woo
    • Journal of the Korean Institute of Intelligent Systems
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    • v.21 no.6
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    • pp.724-729
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    • 2011
  • Information retrieval is a method to search the needed data by users. Generally, when a user searches some data in the large scale data set like the internet, ranking-based search is widely used because it is not easy to find the exactly needed data at once. In this paper, we propose a novel ranking-based search method based on sequence and adjacency relationship of user query by the help of TF-IDF and n-gram. As a result, it was possible to find the needed data more accurately with 73% accuracy in more than 19,000 data set.

A Descriptor Design for the Video Retrieval Combining the Global Feature of an Image and the Local of a Moving Object (영상의 전역 특징과 이동객체의 지역 특징을 융합한 동영상 검색 디스크립터 설계)

  • Jung, Byung-Man;Lee, Kyu-Won
    • Journal of the Korea Institute of Information and Communication Engineering
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    • v.18 no.1
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    • pp.142-148
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    • 2014
  • A descriptor which is suitable for motion analysis by using the motion features of moving objects from the real time image sequence is proposed. To segment moving objects from the background, the background learning is performed. We extract motion trajectories of individual objects by using the sequence of the 1st order moment of moving objects. The center points of each object are managed by linked list. The descriptor includes the 1st order coordinates of moving object belong to neighbor of the pre-defined position in grid pattern, The start frame number which a moving object appeared in the scene and the end frame number which it disappeared. A video retrieval by the proposed descriptor combining global and local feature is more effective than conventional methods which adopt a single feature among global and local features.

Design of Postal Address File for Address Interpretation and Retrieval (주소해석 및 검색을 위한 우편주소파일 설계)

  • Chang, Tai-Woo;Kim, Ho-Yon;Lim, Kil-Taek
    • Journal of Korea Society of Industrial Information Systems
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    • v.12 no.4
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    • pp.74-88
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    • 2007
  • In order to automate the process of mail sorting by delivery sequence, it is necessary to prepare a postal address database and to interpret written addresses on the mail-pieces with the database and OCR technology. The address database is a critical factor of automation and informatization of postal service since it could be used not only in address recognition but also in various mail processing. In this study, we design the schema of postal address database, design the postal address file based on it and explain the method of address interpretation and retrieval using it. We analyze infonnation requirements for transformation of postal address into the standardized format and consider them in the process of design. The postal address file can be used by address matching or retrieval system as well as by Hangul address recognition system for automation of delivery sequence mail-sorting.

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