• The Plant Pathology Journal
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• 제16권1호
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• pp.48-51
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• 2000

Citrus tristeza virus (CTV) was identified form CTV-infected early satsuma mandarin (Citus unshiu) and yuzu (C.junos) by RT-PCR. The total RNAs were isolated from citrus bark and seaf tissues infected with CTV and reverse transcription was followed with primers designed for amplifying CTV coat protein gene. DNA fragments 738 bp were amplified by RT-PCR and these products were colned for sequence analysis. Based on the sequence analysis, this PCR product has 97% sequence homology to CTV (T-385) CP gene isolated from USA. RT-PCR assay for CTV detection was more sensitivity than ELISA assay which was done with anti-CTV CP antibody. This is the frist report about CTV identification in Cheju island Korea.

• 한국어병학회지
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• 제15권2호
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• pp.83-92
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• 2002

EST analysis was performed to identify stress-responsive and immune-related genes from mud loach (Misgurnus mizolepis), cDNA libraries were constructed with liver, intestine and kidney tissues and randomly chosen clones (216 for liver, 198 for intestine and 224 for kidney) were subjected to automated sequence analysis. Of 638 clones sequenced in totlal, approximalely 25% of ESTs was novel sequences (no match to GenBank) or sequences with high homology to hypothrtical/unknown genes. Several potential stress-responsive biomarker and/or immure-related genes were identified in all the tissues examined. It included lectin, MHC class I/II proteins, proteinase inhibitors, superoxide dismulase, catalase, glutathionc-S. transferase, heat-shock protein, warm temperature acclimation protein, complements, methylrransferasc, zinc finger proteins, macrophage maturation associated protein, and others. This information will offer new possibilities as fundamental baseline data for the molecular genetics and breeding of this species with an emphasis on the development of stress. (and disease)-resistsnt fish.

• Korean Journal of Mathematics
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• 제5권2호
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• pp.185-193
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• 1997

In this paper, we study the $BP_*$-module structure of $BP_*$(BG) mod $(p,v_1,{\cdots})^2$ for non abelian groups of the order $p^3$. We know $grBP_*(BG)=BP_*{\otimes}H(H_*(BG);Q_1){\oplus}BP^*/(p,v_1){\otimes}ImQ_1$. The similar fact occurs for $BP_*$-homology $grBP_*(BG)=BP_*s^{-1}H(H_*(BG);Q_1){\oplus}BP_*/(p,v)s^{-1}H^{odd}(BG)$ by using the spectral sequence $E^{*,*}_2=Ext_{BP^*}(BP_*(BG),BP^*){\Rightarrow}BP^*(BG)$.

• Plant Resources
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• 제2권2호
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• pp.69-74
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• 1999

A rapid and sensitive assay for specific detection and identification of barley yellow mosaic virus(BaYMV) was set up using the reverse transcriptase polymerase chain reaction(RT-PCR). A couple of primers was select to discriminate the viruses. PCR fragments of BaYMV(ca.0.9 kb) were obtained by using the method designed for BaYMV capsid protein. RT-PCR fragments were cloned with vector pT7 Blue and the resulting clones were sequenced. Capsid protein of BaYMV consisted of 297 amino acids and 891 nucleotides. The capsid protein sequence of BaYMV showed that 98% of nucleotides and 99% of amino acids homology.

• 미생물학회지
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• 제36권4호
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• pp.267-272
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• 2000

차풀(Cassia nomame)의 뿌리혹 공생세균인 Bradyrhizobium sp.(Cassia) CN9135의 nodD1 유전자를 중합효소 연쇄반응을 통해 크로닝하여 그 염기서열을 조사하였다. 염기서열로부터 유추된 NodD1 단백질은 Bradyrhizobium elkanii와 가장 높은 95%의 상동성을 나타내었다. 뿐만 아니라 nodD2 사이의 intergenic space 부위의 염기서열도 B. japonicum을 포함하는 다른 bradyrhizobia와는 상동성이 거의 없었으나 B. elkanii와는 88%의 높은 상동성을 나타내었다. 우리의 실험 결과는 Bradyrhizobium sp.(Cassia)가 B. elkanii와 매우 근연한 관계임을 보여 주고 있다.

• 미생물학회지
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• 제33권2호
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• pp.86-91
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• 1997

Pseudomonas sp. DJ77로부터 클로닝된 glutathione S-transferase 유전자(phnC)의 염기서열을 결정하였다. 603bp의 open reading frame(ORF)이 존재하였고 개시코돈 앞에서 Shine-Dalgarno sequence를, 종결코돈 뒤에서는 terminator sequence를 발견하였다. phnC 유전자에서 만들어지는 phnC 단백질은 21,416 Da으로 SDS-polyacrylamide gel 전기영동 결과와 일치하였다. PhnC는 Bulkholderia cepacia LB400, Cycloclasticus oligotrophus RB1의 GST와 각각 53.7%, 49%의 높은 상동성을 나타냈다. 아미노산 서열의 상동성과 필수잔기들의 존재유무로 판단할 때 PhnC GST는 theta class GSTs와 진화적으로 유연관계가 높았지만 alpha, mu, pi, sigma class GSTs에서 구조적, 기능적으로 중요하다고 알려진 아미노산 잔기들이 PhnC GST에도 보존되어 있었다. 또한, phnC 유전자의 위치가 C. oligotrophus RB1, B. cepacia LB400 등의 GST 유전자 위치와 유사하다는 점에서 PhnC 효소는 난분해성 방향족 탄화수소의 분해에 관여하는 것으로 생각된다.

• 한국식품영양학회지
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• 제8권1호
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• pp.37-42
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• 1995

The amino acid sequence of basic isozyme 55 of Horseradish Peroxidase (HRP E5) was determined by protein sequencing. HRP E5 consisted about 300 residues, and has a molecular weight of approximately 36,000 $\pm$ 500 dalton. The protein was rich In aspartic acid (14%), arginine(13%), and leucine(11%). The primary structure of HRP E5 was established by sequencing its tryptic (T1-T19) and lysylendopeptic (Al-A3) peptides. The sequence homology between HRP E5 and HRP C (neutral isozyme of horseradish peroxidase) is found to be more than 66%. The highest concentration of identical residues are found on residues 29~56, 90~123, and 155~173, but relatively low on 174~271.

• Journal of Life Science
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• 제10권1호
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• pp.32-36
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• 2000

Solitary long terminal repeats(LTRs) of human endogenous retrovirus K family(HERV-K) have been found to be coexpressed with sequences of closely located genes. It has been suggested that HERV-K LTR-like elements entered the primate genome approximately 33-40 million years ago. WE investigated the presence of HERV-K LTR elements in New World monkeys using PCR amplification. Six LTR elements of HERV-K family were identified from New World monkeys, represented by the squirrel and night monkeys. They showed a high degree of sequence homology(96-99%) with the human-specific HERV-K LTR elements. Phylogenetic analysis reveals that an LTR element (SM-1) from the squirrel monkey and another LTR element (NM-1) from the night monkey are very closely related to the human-specific HERV-K LTR elements with low degree of divergence. This finding suggests that some of LTR elements of HERV-K family have recently been proliferated in New World monkeys. A sequence in chromosome Xq26(AL034407) \ulcorner contains an HERV-K LTR element was shown to be present in the human genome, but is absent in the bonobo, chimpanzee, gorilla, orangutan, and gibbon. It has more than 99% homology to other human-specific HERV-K LTR elements. This sequence thus represents and isolated insertion of an evolving class of elements that may have made a particular contribution to human genomic plasticity.

• The Plant Pathology Journal
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• 제22권3호
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• pp.260-264
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• 2006

Talaromyces flavus mediates the transmission of Apple stem grooving virus (ASGV) to several host plants. The ASGV-F carried by T.flavus was partially purified from the fungus. Based on sequence analysis and homology searches, this is closely related to other ASGV strains isolated from host plants. The partially purified viral coat protein (CP) was separated on a 12% SDS-polyacrylamide gel and analyzed by Western blotting with an ASGV anti-serum. A single band at 28 kDa reacted with the ASGV anti-serum. The deduced amino acid sequence of the ORF-l showed conserved domains, including an NTP-binding helicase motif, GFAGSGKT. The amino acid sequences of the helicase and CP showed strong homology to other ASGV strains (98%). All ASGV isolated from plants and fungi had salt bridges composed of the CP and the GFAGSGKT motif of the helicase, which are commonly conserved in plant viruses. These results suggest that ASGV-F is one of ASGV strains isolated from T.flavus based on sequence similarity as well as the serological analysis of CP.

• 생명과학회지
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• 제8권3호
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• pp.249-256
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• 1998

일본의 잡종잉어 ${\beta}$사 globin유전자의 염기배열로부터 추정되는 아미노산 배열과 이미 보고되어 있는 ${\beta}$사 globin의 아미노산 배열을 비교한 결과, 금붕어와 가장 높은 상동성인 97.3%를 나타내었으며, 거울잉어 ${\beta}_B$와 95.2%, 거울 잉어 ${\beta}_A$와 93.9%의 높은 상동성을 나타내었다. 다음으로 송어(76.9%), 전기뱀장어(71.4%), 혹다랑어(61.9%), 성대(59.9%), 양태(58.5%), 시라칸스(52.4%), 폐어(46.9%), 상어(38.1%) 및 전기가오리(36.1%)의 순으로 나타났다. 또한 ${\beta}$사 globin의 아미노산 배열의 상동성을 기초로하여 분자진화의 계통수를 구하였을 때, 각각의 진화거리로부터 일본의 잡종잉어와 금붕어가 0.013으로 가장 가깝고, 분기한 것이 가장 근년인 것으로 생각되어졌다. 그 다음이 같은종인 거울잉어로 진화거리는 0.035였으며, 연골어류나 폐어와는 그 진화거리가 크게 벌어져 있어 상당히 오래전에 분기한 것으로 추정되었다. 일본 잡종이어의 ${\beta}$사 globin유전자로부터 추정되는 아미노산 배열과 이미 보고되어 있는 다른 척추동물의 아미노산 배열과 비교한 결과, 상동성은 오리(58.1%), 닭(57.8%), 쥐(55.1%), 사람(52.4%), 개구리(50.7%), 및 염소(45.9%)의 순으로 나타났다.