• Tuberculosis and Respiratory Diseases
• /
• 제84권3호
• /
• pp.237-244
• /
• 2021

Background: The emergence of drug-resistant tuberculosis (TB), is a major menace to cast off TB worldwide. Line probe assay (LPA; GenoType MTBDRplus ver. 2) and Xpert MTB/RIF assays are two rapid molecular TB detection/diagnostic tests. To compare the performance of LPA and Xpert MTB/RIF assay for early diagnosis of rifampicin-resistant (RR) TB in acid-fast bacillus (AFB) smear-positive and negative sputum samples. Methods: A total 576 presumptive AFB patients were selected and subjected to AFB microscopy, Xpert MTB/RIF assay and recent version of LPA (GenoType MTBDRplus assay version 2) tests directly on sputum samples. Results were compared with phenotypic culture and drug susceptibility testing (DST). DNA sequencing was performed with rpoB gene for samples with discordant rifampicin susceptibility results. Results: Among culture-positive samples, Xpert MTB/RIF assay detected Mycobacterium tuberculosis (Mtb) in 97.3% (364/374) of AFB smear-positive samples and 76.5% (13/17) among smear-negative samples, and the corresponding values for LPA test (valid results with Mtb control band) were 97.9% (366/374) and 58.8% (10/17), respectively. For detection of RR among Mtb positive molecular results, the sensitivity of Xpert MTB/RIF assay and LPA (after resolving discordant phenotypic DST results with DNA sequencing) were found to be 96% and 99%, respectively. Whereas, specificity of both test for detecting RR were found to be 99%. Conclusion: We conclude that although Xpert MTB/RIF assay is comparatively superior to LPA in detecting Mtb among AFB smear-negative pulmonary TB. However, both tests are equally efficient in early diagnosis of AFB smear-positive presumptive RR-TB patients.

• The Plant Pathology Journal
• /
• 제39권4호
• /
• pp.409-416
• /
• 2023

Bacterial leaf blight of carrots caused by Xanthomonas hortorum pv. carotae (Xhc) is an important worldwide seed-borne disease. In 2012 and 2013, symptoms similar to bacterial leaf blight were found in carrot farms in Jeju Island, Korea. The phenotypic characteristics of the Korean isolation strains were similar to the type strain of Xhc. Pathogenicity showed symptoms on the 14th day after inoculation on carrot plants. Identification by genetic method was multi-position sequencing of the isolated strain JJ2001 was performed using four genes (danK, gyrB, fyuA, and rpoD). The isolated strain was confirmed to be most similar to Xhc M081. Furthermore, in order to analyze the genetic characteristics of the isolated strain, whole genome analysis was performed through the next-generation sequencing method. The draft genome size of JJ2001 is 5,443,372 bp, which contains 63.57% of G + C and has 4,547 open reading frames. Specifically, the classification of pathovar can be confirmed to be similar to that of the host lineage. Plant pathogenic factors and determinants of the majority of the secretion system are conserved in strain JJ2001. This genetic information enables detailed comparative analysis in the pathovar stage of pathogenic bacteria. Furthermore, these findings provide basic data for the distribution and diagnosis of Xanthomonas hortorum pv. carotae, a major plant pathogen that infects carrots in Korea.

• Tuberculosis and Respiratory Diseases
• /
• 제78권4호
• /
• pp.416-418
• /
• 2015

Mycobacterium shinjukuense is a novel species of nontuberculous mycobacteria (NTM) that was first reported in Japan in 2011. It is a slow-growing NTM pathogen that can cause chronic pulmonary infections. There are only a few reported cases of M. shinjukuense infections, all of which are from Japan. We reported a case of chronic lung disease caused by M. shinjukuense. The organism was identified by 16S rRNA, rpoB, and hsp65 gene sequencing. To the best of our knowledge, this was the first confirmed case of lung disease caused by M. shinjukuense outside of Japan.

• 식물병연구
• /
• 제29권4호
• /
• pp.440-444
• /
• 2023

2021년 8월 부산광역시 강서구에서 아주까리의 잎과 줄기에 점무늬병의 발생이 확인되었다. 아주까리 분리균은 tryptic soy agar에서 점액성이 없고 연한 녹색을 띠는 둥근 콜로니를 형성하였다. 세균은 단극성으로 다수의 편모를 가진 막대 모양이었다. 세균을 건전한 아주까리 유묘에 접종했을 때, 동일한 점무늬 증상의 괴사 반응이 나타났다. 병징이 나타난 부위에서 세균을 재분리하여 동일균 여부를 확인하였다. 분리균은 감자 무름 반응과 D-fucose 대사반응이 양성이었으며, troleandomycin에서 생장할 수 있었다. 16S rRNA와 항존유전자(gyrB, rpoD) 염기서열의 상동성을 비교하였을때, Pseudomonas capsici와 유연관계가 가장 높았다. 결과적으로 아주까리에서 분리된 균은 배양적, 생화학적, 유전적 특성에 의해 P. capsici로 동정되었다. 본 연구는 국내 아주까리에서 P. capsici에 의한 점무늬병의 최초 보고이다.

• Tuberculosis and Respiratory Diseases
• /
• 제78권4호
• /
• pp.432-435
• /
• 2015

This is a report of the first South Korean case of a lung disease caused by Mycobacterium simiae. The patient was a previously healthy 52-year-old female. All serial isolates were identified as M. simiae by multi-locus sequencing analysis, based on hsp65, rpoB, 16S-23S rRNA internal transcribed spacer, and 16S rRNA fragments. A chest radiography revealed deterioration, and the follow-up sputum cultures were persistently positive, despite combination antibiotic treatment, including azithromycin, ethambutol, and rifampin. To the best of our knowledge, this is the first confirmed case of a lung disease caused by M. simiae in South Korea.

• 한국어병학회지
• /
• 제34권1호
• /
• pp.105-110
• /
• 2021

We experienced mortality of dark-banded rockfish (Sebastes inermis) maintained in the rearing facility located in Gangneung, after transportation. Moribund fish showed various symptoms such as exophthalmia, skin ulcers, tail rots, gill rots, discoloration of liver with petechiae, yellowish fluid in intestines and ascites. Two different colonies were dominantly appeared after spreading the lesions on the agar plates and incubation. One isolate (SI_1) showed swarming movement on TSA, and formed yellow colonies on TCBS agar. The other (SI_2) showed no swarming motility and green colonies on TCBS agar. Both of them were Gram-negative. All of these results are similar with those of Genus Vibrio. They were identified as V. harveyi and V. gigantis by PCR with subsequent sequencing of 3 different genes (16 rDNA, recA, rpoA). V. harveyi is well-known as a serious pathogen of marine fish and invertebrates, while V. gigantis is known to be often isolated from marine invertebrates, but the pathogenicity is still unknown. We suspect V. harveyi as the cause of the mortality of dark-banded rockfish, but challenge experiments with these 2 Vibrio species are thought to be necessary to make a clear conclusion.

• Tuberculosis and Respiratory Diseases
• /
• 제47권5호
• /
• pp.697-703
• /
• 1999

Mycobacterium celatum is a recently described nontuberculous mycobacterium. Even though pulmonary or lymphatic infection cases were reported previously in human, the clinical significance of the infection with M. celatum is not yet understood completely. Mast infections with this species occurred in the patients with suppressed cell-mediated immunity such as AIDS, and there are only a few cases of pulmonary infection with M. celatum in immunocompetent adults or infants in the world. In Korea, mycobacterial pulmonary infection is a major problem of respiratory disease but, there has been no pulmonary infection with M. celatum reported. We report, to our knowledge, the first Korean case of pulmonary infection with M. celatum, which was identified by rpoB genomic sequencing.

• 한국버섯학회지
• /
• 제20권2호
• /
• pp.43-49
• /
• 2022

Pleurotus ostreatus is a globally cultivated mushroom crop. Cap color is a quality factor in P. ostreatus. However, cap color can spontaneously mutate, degrading the quality of the mushroom on the market. Early detection and removal of mutant strains is the best way to maintain the commercial value of the crop. To detect the cap color mutant Gonji7ho, molecular markers were developed based on insertion/deletions (InDels) derived from the comparison of mitogenomes of Gonji7ho and Gonji7hoM mushrooms. Sequencing, assembly, and comparative analysis of the two mitogenomes revealed genome sizes of 73,212 bp and 72,576 bp with 61 and 57 genes or open reading frames (ORFs) in P. ostreatus Gonji7ho and Gonji7hoM, respectively. Fourteen core protein-encoding genes, two rRNA, and 24 tRNA with some OFRs were predicted. Of the 61 genes or OFRs in the wild type, dpo, rpo, and two orf139 were missing (or remnant) in the mutant strain. Molecular markers were developed based on the sequence variations (InDels) between the two mitogenomes. Six polymorphic molecular markers could detect the mutated mitochondria by PCR. These results provide basic knowledge of the mitogenomes of wild-type and mutant P. ostreatus, and can be applied to discriminate mutated mitochondria.

• Journal of Plant Biotechnology
• /
• 제43권1호
• /
• pp.82-90
• /
• 2016

한국에 분포하는 두릅나무과 식물 대부분은 중요한 약용 식물로 경제적인 가치가 크다. 본 연구는 분자적 방법인 엽록체 DNA 바코드 염기서열 분석을 통해 한국에 자생하고 있는 두릅나무과 식물 14종 전체의 속 및 종간 유연관계를 파악해 보고 이를 구별할 수 있는 마커를 개발하기 위해 수행되었다. 국제 생물 DNA 바코드 컨소시엄(CBOL, the Consortium for the Barcode of Life)이 DNA barcoding marker로 제안한 엽록체 DNA 7영역의 염기서열을 분석한 결과, psbA-trnH영역에서 가장 많은 삽입, 결실 및 염기치환이 나타났으며 조사된 한국의 두릅나무과 식물 14종 모두 구분 될 수 있었다. 또한 각각의 영역에서 특정 속과 종만이 지니는 특이적인 염기서열을 찾을 수 있었다. 인삼의 경우 중국삼과 한국삼의 염기서열에는 차이가 전혀 없었다. 7영역을 모두 유합하여 작성한 계통수에서는 통탈목이 특이성을 나타내며 가장 기부에 분계조를 형성하였다. 두릅나무속과 인삼속은 자매군을 형성하였고, 오갈피속 5 종 역시 서로 높은 유연관계를 나타내었다. 결론적으로 한국에 자생하는 14종의 두릅나무과 식물들이 모두 엽록체 DNA 바코드 마커 개발을 통해 동정이 가능함을 확인하였다.

• 식물병연구
• /
• 제29권4호
• /
• pp.390-398
• /
• 2023

본 연구에서는 사과 겹무늬썩음병을 유발하는 Botryosphaeria dothidea를 억제하는 길항미생물을 선발하였고, 선발한 길항미생물의 항균 활성과 길항 효소 생성 여부를 확인하였다. 선발된 길항미생물 중 4종은 Bacillus velezensis로 동정되었고, 1종은 B. amyloliquefaciens로 동정되었으며 이 길항미생물은 모두 겹무늬썩음병균에 강한 항균 활성을 가지고 있었다. 또한 선발된 5종의 길항미생물은 탄저병균인 Colletotrichum fructicola, 줄기마름병인 Diaporthe eres도 효과적으로 균사생장을 억제하였다. 선발된 길항미생물을 대상으로 cellulase, protease, phosphate solubilization 효소 활성을 분석한 결과 모두 효소를 분비하여 병원균의 생장을 억제 및 사멸시키고 식물 생장촉진 활성을 가지는 것으로 확인되었다. 사과 과실에서 겹무늬썩음병균과 선발된 길항미생물을 동시 접종하여 발병 억제 효과를 검정한 결과 B. velezensis 23-168 균주가 가장 효과적으로 발병을 억제하였다. 따라서 선발된 5종의 길항미생물은 사과 진균 방제를 위한 기초자료로 사용할 수 있을 것으로 생각된다.