• 제목/요약/키워드: reverse transcriptase polymerase chain reaction

검색결과 349건 처리시간 0.032초

신증후출혈열 환자의 혈청학적 및 분자생물학적 진단 검사법 비교 (Comparative Diagnostic Studies on Serologic and Molecular Biological Tests Against Haemorrhagic Fever with Renal Syndrome)

  • 우영대;문희주;배형준
    • 대한의생명과학회지
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    • 제6권2호
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    • pp.141-149
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    • 2000
  • 우리 나라에서 발생하고 있는 급성 출혈성 질환인 신증후출혈열의 원인 바이러스는 Family Bunyaviridae의 Genus Hantavirus에 속하는 한탄과 서울바이러스에 의하여 발생되고 있다. 본 연구에서는 신증후출혈열로 의뢰된 환자에서 한탄바이러스에 대한 항체가를 간접면역형광항체법(indirect immunofluorescent antibody technique, IFAT), 면역효소측정법 (enzyme-linked immunosorbent assay, ELISA) (IgG, IgM), 고비중입자응집반응 (high density composite particle agglutination, HDPA) 및 플라크감소중화시험 (plaque reduction neutralization test, PRNT) 등으로 비교 측정하였고, 신증후출혈열 환자로 확진된 15명의 한탄바이러스 혈청형을 PRNT와 혈청형 특이 역전사 효소 중합효소연쇄반응(nested reverse transcriptase polymerase chain reaction, nested RT-PCR)으로 확인하였다. 신증후출혈열로 의뢰된 환자에서의 한탄바이러스에 대한 IFAT, ELISA (IgG, IgM), HDPA그리고 PRNT비교에서 형광항체, ELISA IgG,응집항체 및 중화항체는 8명 모두 높게 나타났으며, ELISA IgM은 5명에서는 현저히 높은 항체를 보유하고 있었다. 신증후출혈 열 환자 15명에서는 높은 형광항체와 중화항체 역가를 나타내었고, 15명 중 12명은 한탄바이러스, 2명은 서울바이러스에 대한 높은 중화항체를 갖고 있었으며, 1명은 두 바이러스에 대하여 동일한 항체 역가를 나타내었으며, 혈청형 특이 primer를 사용한 nested RT-PCR에서는 15명 중 3명과 1명만이 한탄바이러스와 서울바이러스 primer에 대해 RNA가 검출되었다.

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Mineral trioxide aggregate가 인간치수세포에서 유전자 발현에 미치는 영향 (GENE EXPRESSION PROFILING IN HUMAN DENTAL PULP CELLS TREATED WITH MINERAL TRIOXIDE AGGREGATE)

  • 김용범;손원준;이우철;금기연;백승호;배광식
    • Restorative Dentistry and Endodontics
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    • 제35권3호
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    • pp.152-163
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    • 2010
  • 이 연구에서는 mineral trioxide aggregate (MTA)를 in vitro로 인간치수세포에 적용하였을 때 유전자들의 변화를 조사하였다. 실험군은 MTA를 teflon tube (직경 10 mm 길이 2 mm)에 담아 4시간 경화시킨 후HDPCs에 적용하였고, 대조군은 빈tube만을 적용하였다. 6, 24, 72시간 후 total RNA를 추출하여 microarray를 이용하여 분석하여, 2배 이상 또는 절반 이하의 변화를 보이는 유전자 중 선택적으로 역전사 중합효소 연쇄반응(reverse transcriptase polymerase chain reaction)을 사용하여 발현을 확인하였다. 24,546개의 유전자 중에서 109개의 유전자가 2배 이상 up-regulation되었으며(예. FOSB, THBS1, BHLHB2, EDN1,IL11, FN1, COL10A1, TUFT1) 69개의 유전자가 50%이하로 down-regulation되었다(예. SMAD6, DCN). MTA는 bio-inert한 재료라기 보다는 치수세포에 다양한 경로로 영향을 주는 재료로 사료된다. 특히 치수세포의 분화와 증식에 관여하는 유전자의 변화에 영향을 주며 석회화 과정에 관여하는 유전자의 변화에 직접적인 영향을 주리라 사료된다.

돼지 신장의 Angiotensin I Converting Enzyme cDNA 클로닝 (Cloning of Pig Kidney cDNA Encoding an Angiotensin I Converting Enzyme)

  • 윤장호;윤주억;홍광원
    • Applied Biological Chemistry
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    • 제49권4호
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    • pp.293-297
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    • 2006
  • 포유류의 조직에 널리 분포되어 있으며 혈압 조절에 중요한 역할을 하는 Angiotensin-converting enzyme(ACE)은 아연을 함유하는 dipeptidase로서 angiotensin I을 가수분해하여 강력한 혈압상승제인 angiotensin II를 생성하는 효소이다. 최근에 돼지의 난소에서 ACE 활성이 측정되었으며, 돼지의 신장에서 ACE 단백질이 분리되어 그 특성이 알려졌다. 그러나 돼지의 어떠한 ACE DNA 염기서열도 아직까지 보고 된 바는 없다. 그러므로 본 연구에서 reverse transcriptase-polymerase chain reaction(RT-PCR)을 이용하여 돼지의 신장 ACE cDNA를 클로닝하고 그 염기서열을 분석하였다. ACE cDNA는 1309개의 아미노산으로 구성되어 있으며 그 분자량은 150kDa이다. 염기서열로부터 유추한 아미노산의 서열을 분석한 결과, N 말단의 33개 아미노산이 signal peptide 역할을 하는 것으로 보이며, C 말단 근처의 짧은 transmembrane 영역은 세포막에 anchor역할을 하는 것으로 보인다. 돼지 신장의 ACE에서 두 개의 매우 유사한 amino acid peptidase domain은 tandem duplication 되어 있으며, 각각의 domain은 다른 포유류의 체세포 ACE들과 마찬가지로 putative metal-binding site(His-Glu-Met-Gly-His)를 하나씩 가지고 있는 것으로 나타났다. 돼지 신장 ACE 서열과 인간, 토끼, 쥐 등과 같은 포유류의 ACE 아미노산 서열들과의 상동성 비교는 진화과정 중 두 domain이 매우 잘 보전되어 왔음을 보여주고 있다.

Angiopoietin-1 and -2 and vascular endothelial growth factor expression in ovarian grafts after cryopreservation using two methods

  • Cho, In Ae;Lee, Yeon Jee;Lee, Hee Jung;Choi, In Young;Shin, Jeong Kyu;Lee, Soon Ae;Lee, Jong Hak;Choi, Won Jun
    • Clinical and Experimental Reproductive Medicine
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    • 제45권3호
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    • pp.143-148
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    • 2018
  • Objective: The favored method of preserving fertility in young female cancer survivors is cryopreservation and autotransplantation of ovarian tissue. Reducing hypoxia until angiogenesis takes place is essential for the survival of transplanted ovarian tissue. The aim of this study was to investigate the role of angiopoietin-1 (Angpt-1), angiopoietin-2 (Angpt-2), and vascular endothelial growth factor (VEGF) in ovarian tissue grafts that were cryopreserved using two methods. Methods: Ovarian tissues harvested from ICR mice were divided into three groups: group I (control), no cryopreservation; group II, vitrification in EFS (ethylene-glycol, ficoll, and sucrose solution)-40; and group III, slow freezing in dimethyl sulfoxide. We extracted mRNA for VEGF, Angpt-1, and Angpt-2 from ovarian tissue 1 week following cryopreservation and again 2 weeks after autotransplantation. We used reverse transcriptase-polymerase chain reaction to quantify the levels of VEGF, Angpt-1, and Angpt-2 in the tissue. Results: Angpt-1 and Angpt-2 expression decreased after cryopreservation in groups II and III. After autotransplantation, Angpt-1 and Angpt-2 expression in ovarian tissue showed different trends. Angpt-1 expression in groups II and III was lower than in group I, but Angpt-2 in groups II and III showed no significant difference from group I. The vitrified ovarian tissues had higher expression of VEGF and Angpt-2 than the slow-frozen ovarian tissues, but the difference was not statistically significant. Conclusion: Our results indicate that Angpt-2 may play an important role in ovarian tissue transplantation after cryopreservation although further studies are needed to understand its exact function.

감자바이러스 Y의 OK계통에 대한 외피단백질 유전자 cDNA 클로닝 및 염기서열 분석 (Complementary DNA Cloning and Sequencing of the Coat Protein Gene of Potato Virus Y-Ordinary Korean Strain)

  • 정승룡;최장경;길전행이;이부영
    • 한국식물병리학회지
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    • 제11권1호
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    • pp.73-79
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    • 1995
  • Complementary DNAs (cDNAs) to the coat protein gene of an ordinary Korean strain of potato virus Y (PVY-OK) isolated from potato (cv. Superior) were synthesized and cloned into a plasmid pUC119 and sequenced. The RNA of the virus propagated in tobacco (Nicotinaa sylvestris) was extracted by the method of phenol extraction. The first strand of cDNAs to the coat protein penomic RNA of the virus was made by Moloney murine leukemia virus reverse transcriptase. The cDNA were synthesized and amplified by the method of polymerase chain reaction (PCR) using a pair of oligonucleotide primers. PVYCP3P and PVYCP3M. The size of cDNAs inserted in pUC119 plasmid was estimated as about 840 bp upon agarose gel electrophoresis. Double stranded cDNAs were transformed into the competent cell of E. coli JM109. Sequence analysis of cDNAs was conducted by the dideoxynucleotide chain termination method. Homology of cDNAs of the PVY-OK coat protein genomic RNA with those of PVY-O (Japan), PVY-T (Japan), PVY-TH (Japan), PVYN (The Netherlands),and PVYY (France) was represented as 97.3%, 88.9%, 89.3%, 89.6% and 98.5%, respectively. Homology at the amino acid level turned out to the be 97.4%, 92.5%, 92.9%, 92.9% and 98.5%, respectively.

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인체 T-림프구 hprt 유전자에서 방사선 및 pentachlorophenol에 의한 돌연변이 빈도의 비교(I) (Comparison of Mutant Frequencies Induced by ${\gamma}$-radiation and Pentachlorophenol at hprt Locus in Human T-lymphocytes(I))

  • 김인규;박선영;윤병수;조명행;이영순
    • Journal of Radiation Protection and Research
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    • 제22권1호
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    • pp.15-21
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    • 1997
  • 인체 T-림프구에서 감마선과 대표적 화학 독성물질인 pentachlorophenol(PCP)의 돌연변이 효과를 hypoxanthine phosphoribosyl transferase(hprt) 유전자의 돌연변이 빈도로써 측정하였다. 감마선은 $^{137}$Cs원을 사용하여 세포의 초기배양 시기에 0-3.0 Gy를 조사하였고, PCP는 세포의 초기배양시 최종농도 0-100 ppm으로 24시간 투여하였다. 돌연변이세포는 6-thioguanine을 처리 하에 세포가 성장하는 능력으로 분류하였다. 방사선에 의한 돌연변이빈도는 1.0 Gy, 2.0 Gy와 3.0 Gy 선량에서 대조군보다 약40%, 400%와 750% 증가하였고 0.2 Gy와 0.5 Gy의 선량에서는 유의성 있는 변화가 없었다. PCP를 15 ppm, 25 ppm 그리고 50 ppm을 처리하였을 때 대조군보다 각각 30%, 90% 및 520%정도 증가하였다.

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Development of a New Duplex Real-Time Polymerase Chain Reaction Assay for Detection of Dicer in G. gallus

  • Ji, Xiaolin;Wang, Qi;Gao, Yulong;Wang, Yongqiang;Qin, Liting;Qi, Xiaole;Gao, Honglei;Wang, Xiaomei
    • Journal of Microbiology and Biotechnology
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    • 제23권5호
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    • pp.630-636
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    • 2013
  • Recently, there has been a growing body of evidence showing that cellular microRNAs (miRNAs) are involved in virus-host interactions. Numerous studies have focused on analyses of the expression profiles of cellular miRNAs, but the expression patterns of Dicer, which is responsible for the generation of miRNAs, have only rarely been explored in Gallus gallus. We developed a duplex real-time reverse transcriptase polymerase chain reaction (RT-PCR) assay for the relative quantification of the mRNAs of Dicer and ${\beta}$-actin in G. gallus. To apply this method, the expression of Dicer in avian cells after infection with avian leukosis virus subgroup J (ALV-J) was detected using our established duplex real-time RT-PCR. The duplex real-time RT-PCR assay is sufficiently sensitive, specific, accurate, reproducible, and cost-effective for the detection of Dicer in G. gallus. Furthermore, this study, for the first time, demonstrated that ALV-J can induce differential expression of Dicer mRNA in the ALV-J-infected cells.

광주광역시 꿀벌질병 동향조사 (Prevalence of honeybee (Apis mellifera) diseases in Gwangju)

  • 이인행;김지연;최종욱;고바라다;정보람;박재성;나호명;김용환
    • 한국동물위생학회지
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    • 제41권2호
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    • pp.111-118
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    • 2018
  • This study was carried out to investigate the prevalence of honeybee (Apis mellifera) diseases in Gwangju area. From November 2016 to August 2017, 89 samples were collected from 33 apiculture farms and reverse transcriptase-polymerase chain reaction (RT-PCR), polymerase chain reaction (PCR), and real time PCR were conducted. 14 infectious pathogens, including seven viruses, two bacteria, three fungi, and two parasites, were investigated from random apiculture farms in Gwangju. The percentage of infectious pathogens were as follows: Stonebrood (76.4%), Deformed wing virus (51.7%), Nosema (27.0%) in PCR and RT-PCR. This result indicated that Stonebrood was most prevalent disease in Gwangju area. And we could get similar results from real time PCR. 84.8% of farms have more than two of infectious pathogens. Stonebrood and Deformed wing virus were major diseases in almost all seasons and Black queen cell virus disease was especially prevalent in May.

대전광역시 양봉농가의 꿀벌질병 감염률 조사 (Prevalence of honeybee (Apis mellifera) disease in Daejeon)

  • 김영주;김종호;오윤희;이상준;송선경;정은영;이상준;이석주;문병천
    • 한국동물위생학회지
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    • 제39권4호
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    • pp.253-258
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    • 2016
  • This study was conducted to investigate the prevalence of honey bee (Apis mellifera) disease in Daejeon. From May to September in 2014, 63 samples were collected from 63 apiculture farms in the regions and reverse transcriptase-polymerase chain reaction (RT-PCR) and polymerase chain reaction (PCR) was conducted. A total of 11 infectious pathogens, including 6 virus, 2 bacteria, 2 fungi, and 1 parasite, were investigated in honeybee colonies suffering from symptom of sudden collapse, depopulation or paralysis. The infectious pathogens and infection rates among 63 honeybee colonies detected were as follows: sacbrood virus (12.7%), chronic bee paralysis virus (1.6%), stonebrood (11.1%), American foulbrood (19.0%), European foulbrood (6.3%), respectively. The result indicate that foul-brood was most prevalent disease in apiculture farms in Daejeon area.

Shorter Telomere Length Is Associated with Increased Breast Cancer Risk in a Chinese Han Population: A Case-Control Analysis

  • Wang, Zhaoxia;Zhang, Zhenxing;Guo, Yanling;Shui, Huifeng;Liu, Guoqi;Jin, Tianbo;Wang, Huijie
    • Journal of Breast Cancer
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    • 제21권4호
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    • pp.391-398
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    • 2018
  • Purpose: The aim of this study was to investigate the association of telomere length with breast cancer risk. We simultaneously explored the association between telomerase reverse transcriptase gene polymorphisms and telomere length. Methods: We used real-time quantitative polymerase chain reaction to measure relative telomere length (RTL) in genomic DNA extracted from peripheral blood from 183 breast cancer cases and 191 healthy controls. Genotyping was performed using the Sequenom MassARRAY platform. Results: Our results show that breast cancer patients had significantly shorter RTLs than control subjects (p<0.05). When the RTLs were categorized into tertiles, we found that the lowest RTL was significantly associated with increased breast cancer risk compared with the highest RTL (odds ratio [OR], 2.33; 95% confidence interval [CI], 1.40-3.90; p=0.001). Subgroup analyses indicated that risk of breast cancer was also significantly increased in the lowest RTL compared with the highest RTL in age >40 years (OR, 2.41; 95% CI, 1.31-4.43;p=0.005), body mass index ${\leq}24kg/m^2$ (OR, 2.81; 95% CI, 1.55-5.10; p=0.001), and postmenopausal women (OR, 3.94; 95% CI, 1.63-9.51; p=0.002), respectively. In addition, individuals with the AA genotype of rs2853677 have longer telomeres than those of breast cancer patients with the AG genotype (p=0.011). Conclusion: Our results suggest that shorter RTL was associated with an increased risk of breast cancer. An association was found between the AA genotype of rs2853677 and longer RTLs in the case group. Functional studies are warranted to validate this association and further investigate our findings.