• 미생물학회지
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• 제47권3호
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• pp.188-193
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• 2011

C형 간염바이러스(hepatitis C virus; HCV) 증식을 효과적이며 특이적으로 제어할 수 있는 유전산물로서, HCV 증식조절인자인 NS5B RNA replicase 존재에 의해 allosteric하게 활성이 유도될 수 있는 HCV internal ribosome entry site (IRES) 표적 hammerhead 리보자임을 개발하였다. 이러한 리보자임은 HCV IRES 염기서열 중 +382 nucleotide 자리를 인지하는 hammerhead 리보자임, NS5B RNA replicase와 특이적으로 결합하는 RNA aptamer 부위, 그리고 aptamer와 NS5B와의 결합에 의해 리보자임 활성을 유도할 수 있도록 구조적 변이를 전달할 수 있는 communication module 부위 등으로 구성되어 있다. 이러한 allosteric 리보자임에 의해 세포 배양에서 HCV의 replicon 복제가 효과적으로 억제됨을 실시간 PCR 분석을 통하여 관찰하였다. 특히, HCV 지놈을 표적하는 리보자임 단독, 또는 HCV NS5B에 대한 RNA aptamer 단독에 의한 HCV 복제 억제능보다 allosteric 리보자임에 의한 HCV 복제 억제능이 더 뛰어났다. 따라서 개발된 allosteric 리보자임은 HCV 증식의 효과적인 증식 억제 선도물질로 활용될 수 있을 것이다.

• 한국미생물·생명공학회지
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• 제15권5호
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• pp.319-327
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• 1987

알코올 생산성이 높은 Zymomonas 균주의 기질 이용성을 넓히기 위한 목적으로 natural replicon을 포함하며 적당한 항생제 저항표지를 갖는 plasmid vector의 제조를 시도하였다. Z. mobilis ATCC10988에서 분리된 몇 개의 plasmid중 3.9kb의 적당한 크기를 갖는 pZM3를 선정하여 수종의 제한효소로 처리하여 절편의 크기에 따라 유전자 지도를 작성하였다. pZM 3의 replicon과 pBR 325의 chloramphenicol 저항유전자를 포함한 재조합 plasmid인 pHZ22를 개발하고 이 plasmid vector가 숙주세포인 Z. mobilis ATCC31821에서 독립적으로 replication됨을 확인하였다. 또 하나의 항생제 저항표지로서 RP4의 tetracycline 저항유전자를 분리하여 pHZ22에 도입함으로써 pHZT224를 제조하였는데 이 plasmid vector도 Zymomonas로 conjugation에 의해 전이되어 안정하게 유지 되었다. 본 연구를 통하여 개발된 plasmid vector는 Z. mobilis와 E. coli에 공히 작용하는 shuttle vector 로서 외부 유전자를 Zymomonas에 도입시킬 수 있는 유용한 유전자 운반체임이 확인되었다.

• Journal of Microbiology
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• 제45권3호
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• pp.193-198
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• 2007

A marine bacterium was isolated from Mai Po Nature Reserve of Hong Kong and identified as Vibrio cholerae MP-1. It contains a small plasmid designated as pVC of 3.8 kb. Four open reading frames (ORFs) are identified on the plasmid, but none of them shows homology to any known protein. Database search indicated that a 440 bp fragment is 96% identical to a fragment found in a small plasmid of another V. cholerae. Further experiments demonstrated that a 2.3 kb EcoRI fragment containing the complete ORF1, partial ORF4 and their intergenic region could self-replicate. Additional analyses revealed that sequence upstream of ORF1 showed the features characteristic of theta type replicons. Protein encoded by ORF1 has two characteristic motifs existed in most replication initiator proteins (Rep): the leucine zipper (LZ) motif located at the N-terminal region and the alpha helix-turn-alpha helix motif (HTH) located at the C-terminal end. The results suggest that pVC replicates via the theta type mechanism and is likely a novel type of theta replicon.

• Molecules and Cells
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• 제42권1호
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• pp.67-78
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• 2019

Methylation of HBV cccDNA has been detected in vivo and in vitro; however, the mechanism and its effects on HBV replication remain unclear. HBx derived from a 1.2-mer HBV replicon upregulated protein levels and enzyme activities of DNA methyltransferase 1 (DNMT1), 3a, and 3b, resulting in methylation of the negative regulatory region (NRE) in cccDNA, while none of these effects were observed with an HBx-null mutant. The HBx-positive HBV cccDNA expressed higher levels of HBc and produced about 4-fold higher levels of HBV particles than those from the HBx-null counterpart. For these effects, HBx interrupted the action of NRE binding protein via methylation of the C-1619 within NRE, resulting in activation of the core promoter. Treatment with 5-Aza-2′dC or DNMT1 knock-down drastically impaired the ability of HBx to activate the core promoter and stimulate HBV replication in 1.2-mer HBV replicon and in vitro infection systems, indicating the positive role of HBx-mediated cccDNA methylation in HBV replication.

• BMB Reports
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• 제40권6호
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• pp.895-898
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• 2007

The oxygen dependent regulation of DNA replication is an essential property of proliferating mammalian cells. In human T24 bladder cancer cells, several hours of hypoxia leads to reversible DNA replication arrest and re-entry of oxygen induces a burst of replication initiation. This short communication provides strong evidence that PD184352 initiates DNA replication in living hypoxic cells without elevating the oxygen level. PD184352 releases the regular hypoxic replicon arrest, however, at a low intensity compared to the effect of reoxygenation. Moreover, PD184352 shows no effect on normoxically incubated as well as reoxygenated T24 cells.

• 한국생명과학회:학술대회논문집
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• 한국생명과학회 2007년도 제48회 학술심포지움 및 추계국제학술대회
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• pp.56.2-56.2
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• 2007

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• 미생물학회지
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• 제23권1호
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• pp.56-63
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• 1985

Zymomonas Mobilis로 부터 플라스미드를 분리하여 그 특성을 조사하고 E. col i와 Zymomas양쪽에서 모두 복제하는 셔틀벡터를 제조하였다. Zymomonas mobilis의 4 균주로부터 native plasmid를 분리해 본 결과 모든 Zymomonas균주들은 적어도 하나 이상의 플라스미드를 가지고 있었으며 그 크기는 1.7kb에서 46kb사이였다. 숙주균 주를 선정하고자 Zymomonas의 각종 항생물질에 대한 약재내성을 조사한 결과 특히 tetracycline과 chloramphenic col에 아주 민감한 것으로 나타났다. Zymomonas의 플라스미드들간의 염기배열의 유사성을 조사한 결과 ATCC 1 10988과 ZM 1의 플라스미드들간에는 염기배열의 유사성이 있었고 ZM 4와 Agll은 유사성이 없었다. 클로닝벡터로 개발하고자 하는 ATCC 10988의 1.7kb플라스미드를 pZM886이라 명명하고 이 pZM886을 pBR322와 재조합시켜서 pBZ41이라 명명하였다. pBZ41의 제한효소지도를 작성하였다. pBZ41을 이용하여 조사한 결과 Zymomonas의 replicon은 E.coli에서 작동되지 않았으며 pBR322는 또한 Zymomonas내에서 복제되지 않는 것으로 추정되었다. pBZ41을 conjugal mobilization방법으로 E.coli에서 Zymomonas로 옮겼을 때 Conjugation 된 Zymomonas 들은 모두 tetracycline에 저항성을 나타내었으며 안정하게 플라스미드를 유지시켰다.

• BMB Reports
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• 제57권2호
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• pp.79-85
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• 2024

Pre-harvest sprouting is a critical phenomenon involving germination of seeds in the mother plant before harvest under relative humid conditions and reduced dormancy. In this paper, we generated HDR mutant lines with one region SNP (C/T) and an insertion of 6 bp (GGT/GGTGGCGGC) in OsERF1 genes for pre-harvest sprouting (PHS) resistance using CRISPR/Cas9 and a geminiviral replicon system. The incidence of HDR was 2.6% in transformed calli. T₁ seeds were harvested from 12 HDR-induced calli and named ERF1-hdr line. Molecular stability, key agronomic properties, physiological properties, and biochemical properties of target genes in the ERF1-hdr line were investigated for three years. The ERF1-hdr line showed significantly enhanced seed dormancy and pre-harvest sprouting resistance. qRT-PCR analysis suggested that enhanced ABA signaling resulted in a stronger phenotype of PHS resistance. These results indicate that efficient HDR can be achieved through SNP/InDel replacement using a single and modular configuration applicable to different rice targets and other crops. This work demonstrates the potential to replace all genes with elite alleles within one generation and greatly expands our ability to improve agriculturally important traits.

• Bulletin of the Korean Chemical Society
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• 제32권4호
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• pp.1146-1152
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• 2011

The discovery of 2'-spirocyclopropyl-ribocytidine (J. Med. Chem. 2010, 53, 8150-8160) as a potent inhibitor of RNA synthesis by NS5B ($IC_{50}=7.3{\mu}M$), the RNA polymerase encoded by hepatitis C Virus (HCV), has led to the synthesis and biological evaluation of several carbocyclic versions of 2'-spiropropyl-nucleosides. The cyclopentenol intermediate 7 was successfully constructed via ring-closing metathesis (RCM) from divinyl 6. Spirocyclopropanation of enone 8 was effected by using (2-chloroethyl)-dimethylsulfonium iodide and potassium tert-butoxide to form the desired intermediate 9. The synthesized nucleoside analogues 21-24 were assayed for their ability to inhibit HCV RNA replication in a subgenomic replicon Huh7 cell line. Among them, the cytosine nucleoside analogue 22 exhibited significant anti-HCV activity ($EC_{50}= 8.2{\mu}M$).

• Journal of Microbiology and Biotechnology
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• 제26권4호
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• pp.725-729
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• 2016

A novel genome-engineering tool in Clostridium acetobutylicum was developed based on single-crossover homologous recombination. A small-sized non-replicable plasmid, pHKO1, was designed for efficient integration into the C. acetobutylicum genome. The integrated pHKO1 plasmid backbone, which included an antibiotic resistance gene, can be excised in vivo by Flp recombinase, leaving a single flippase recognition target sequence in the middle of the targeted gene. Since the pSHL-FLP plasmid, the carrier of the Flp recombinase gene, employed the segregationally unstable pAMβ1 replicon, the plasmid was rapidly cured from the mutant C. acetobutylicum. Consequently, our method makes it easier to engineer C. acetobutylicum.