• Title/Summary/Keyword: random forest model

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Prediction of Metal Ion Binding Sites in Proteins from Amino Acid Sequences by Using Simplified Amino Acid Alphabets and Random Forest Model

  • Kumar, Suresh
    • Genomics & Informatics
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    • v.15 no.4
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    • pp.162-169
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    • 2017
  • Metal binding proteins or metallo-proteins are important for the stability of the protein and also serve as co-factors in various functions like controlling metabolism, regulating signal transport, and metal homeostasis. In structural genomics, prediction of metal binding proteins help in the selection of suitable growth medium for overexpression's studies and also help in obtaining the functional protein. Computational prediction using machine learning approach has been widely used in various fields of bioinformatics based on the fact all the information contains in amino acid sequence. In this study, random forest machine learning prediction systems were deployed with simplified amino acid for prediction of individual major metal ion binding sites like copper, calcium, cobalt, iron, magnesium, manganese, nickel, and zinc.

A Hybrid Learning Model to Detect Morphed Images

  • Kumari, Noble;Mohapatra, AK
    • International Journal of Computer Science & Network Security
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    • v.22 no.6
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    • pp.364-373
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    • 2022
  • Image morphing methods make seamless transition changes in the image and mask the meaningful information attached to it. This can be detected by traditional machine learning algorithms and new emerging deep learning algorithms. In this research work, scope of different Hybrid learning approaches having combination of Deep learning and Machine learning are being analyzed with the public dataset CASIA V1.0, CASIA V2.0 and DVMM to find the most efficient algorithm. The simulated results with CNN (Convolution Neural Network), Hybrid approach of CNN along with SVM (Support Vector Machine) and Hybrid approach of CNN along with Random Forest algorithm produced 96.92 %, 95.98 and 99.18 % accuracy respectively with the CASIA V2.0 dataset having 9555 images. The accuracy pattern of applied algorithms changes with CASIA V1.0 data and DVMM data having 1721 and 1845 set of images presenting minimal accuracy with Hybrid approach of CNN and Random Forest algorithm. It is confirmed that the choice of best algorithm to find image forgery depends on input data type. This paper presents the combination of best suited algorithm to detect image morphing with different input datasets.

Applications of Machine Learning Models for the Estimation of Reservoir CO2 Emissions (저수지 CO2 배출량 산정을 위한 기계학습 모델의 적용)

  • Yoo, Jisu;Chung, Se-Woong;Park, Hyung-Seok
    • Journal of Korean Society on Water Environment
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    • v.33 no.3
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    • pp.326-333
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    • 2017
  • The lakes and reservoirs have been reported as important sources of carbon emissions to the atmosphere in many countries. Although field experiments and theoretical investigations based on the fundamental gas exchange theory have proposed the quantitative amounts of Net Atmospheric Flux (NAF) in various climate regions, there are still large uncertainties at the global scale estimation. Mechanistic models can be used for understanding and estimating the temporal and spatial variations of the NAFs considering complicated hydrodynamic and biogeochemical processes in a reservoir, but these models require extensive and expensive datasets and model parameters. On the other hand, data driven machine learning (ML) algorithms are likely to be alternative tools to estimate the NAFs in responding to independent environmental variables. The objective of this study was to develop random forest (RF) and multi-layer artificial neural network (ANN) models for the estimation of the daily $CO_2$ NAFs in Daecheong Reservoir located in Geum River of Korea, and compare the models performance against the multiple linear regression (MLR) model that proposed in the previous study (Chung et al., 2016). As a result, the RF and ANN models showed much enhanced performance in the estimation of the high NAF values, while MLR model significantly under estimated them. Across validation with 10-fold random samplings was applied to evaluate the performance of three models, and indicated that the ANN model is best, and followed by RF and MLR models.

Covariance-based Recognition Using Machine Learning Model

  • Osman, Hassab Elgawi
    • Proceedings of the Korean Society of Broadcast Engineers Conference
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    • 2009.01a
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    • pp.223-228
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    • 2009
  • We propose an on-line machine learning approach for object recognition, where new images are continuously added and the recognition decision is made without delay. Random forest (RF) classifier has been extensively used as a generative model for classification and regression applications. We extend this technique for the task of building incremental component-based detector. First we employ object descriptor model based on bag of covariance matrices, to represent an object region then run our on-line RF learner to select object descriptors and to learn an object classifier. Experiments of the object recognition are provided to verify the effectiveness of the proposed approach. Results demonstrate that the propose model yields in object recognition performance comparable to the benchmark standard RF, AdaBoost, and SVM classifiers.

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Predicting Forest Fires Using Machine Learning Considering Human Factors (인적요인을 고려한 머신러닝 활용 산림화재 예측)

  • Jin-Myeong Jang;Joo-Chan Kim;Hwa-Joong Kim;Kwang-Tae Kim
    • Journal of Korea Society of Industrial Information Systems
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    • v.28 no.5
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    • pp.109-126
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    • 2023
  • Early detection of forest fires is essential in preventing large-scale forest fires. Predicting forest fires serves as a vital early detection method, leading to various related studies. However, many previous studies focused solely on climate and geographic factors, overlooking human factors, which significantly contribute to forest fires. This study aims to develop forest fire prediction models that take into account human, weather and geographical factors. This study conducted a comparative analysis of four machine learning models alongside the logistic regression model, using forest fire data from Gangwon-do spanning 2003 to 2020. The results indicate that XG Boost models performed the best (AUC=0.925), closely followed by Random Forest (AUC=0.920), both of which are machine learning techniques. Lastly, the study analyzed the relative importance of various factors through permutation feature importance analysis to derive operational insights. While meteorological factors showed a greater impact compared to human factors, various human factors were also found to be significant.

A Spatial Analysis of Seismic Vulnerability of Buildings Using Statistical and Machine Learning Techniques Comparative Analysis (통계분석 기법과 머신러닝 기법의 비교분석을 통한 건물의 지진취약도 공간분석)

  • Seong H. Kim;Sang-Bin Kim;Dae-Hyeon Kim
    • Journal of Industrial Convergence
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    • v.21 no.1
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    • pp.159-165
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    • 2023
  • While the frequency of seismic occurrence has been increasing recently, the domestic seismic response system is weak, the objective of this research is to compare and analyze the seismic vulnerability of buildings using statistical analysis and machine learning techniques. As the result of using statistical technique, the prediction accuracy of the developed model through the optimal scaling method showed about 87%. As the result of using machine learning technique, because the accuracy of Random Forest method is 94% in case of Train Set, 76.7% in case of Test Set, which is the highest accuracy among the 4 analyzed methods, Random Forest method was finally chosen. Therefore, Random Forest method was derived as the final machine learning technique. Accordingly, the statistical analysis technique showed higher accuracy of about 87%, whereas the machine learning technique showed the accuracy of about 76.7%. As the final result, among the 22,296 analyzed building data, the seismic vulnerabilities of 1,627(0.1%) buildings are expected as more dangerous when the statistical analysis technique is used, 10,146(49%) buildings showed the same rate, and the remaining 10,523(50%) buildings are expected as more dangerous when the machine learning technique is used. As the comparison of the results of using advanced machine learning techniques in addition to the existing statistical analysis techniques, in spatial analysis decisions, it is hoped that this research results help to prepare more reliable seismic countermeasures.

A Crash Prediction Model for Expressways Using Genetic Programming (유전자 프로그래밍을 이용한 고속도로 사고예측모형)

  • Kwak, Ho-Chan;Kim, Dong-Kyu;Kho, Seung-Young;Lee, Chungwon
    • Journal of Korean Society of Transportation
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    • v.32 no.4
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    • pp.369-379
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    • 2014
  • The Statistical regression model has been used to construct crash prediction models, despite its limitations in assuming data distribution and functional form. In response to the limitations associated with the statistical regression models, a few studies based on non-parametric methods such as neural networks have been proposed to develop crash prediction models. However, these models have a major limitation in that they work as black boxes, and therefore cannot be directly used to identify the relationships between crash frequency and crash factors. A genetic programming model can find a solution to a problem without any specified assumptions and remove the black box effect. Hence, this paper investigates the application of the genetic programming technique to develope the crash prediction model. The data collected from the Gyeongbu expressway during the past three years (2010-2012), were separated into straight and curve sections. The random forest technique was applied to select the important variables that affect crash occurrence. The genetic programming model was developed based on the variables that were selected by the random forest. To test the goodness of fit of the genetic programming model, the RMSE of each model was compared to that of the negative binomial regression model. The test results indicate that the goodness of fit of the genetic programming models is superior to that of the negative binomial models.

Design of Fetal Health Classification Model for Hospital Operation Management (효율적인 병원보건관리를 위한 태아건강분류 모델)

  • Chun, Je-Ran
    • Journal of Digital Convergence
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    • v.19 no.5
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    • pp.263-268
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    • 2021
  • The purpose of this study was to propose a model which is suitable for the actual delivery system by designing a fetal delivery hospital operation management and fetal health classification model. The number of deaths during childbirth is similar to the number of maternal mortality rate of 295,000 as of 2017. Among those numbers, 94% of deaths are preventable in most cases. Therefore, in this paper, we proposed a model that predicts the health condition of the fetus using data like heart rate of fetuses, fetal movements, uterine contractions, etc. that are extracted from the Cardiotocograms(CTG) test using a random forest. If the redundancy of the data is unbalanced, This proposed model guarantees a stable management of the fetal delivery health management system. To secure the accuracy of the fetal delivery health management system, we remove the outlier which embedded in the system, by setting thresholds for the upper and lower standard deviations. In addition, as the proportion of the sequence class uses the health status of fetus, a small number of classes were replicated by data-resampling to balance the classes. We had the 4~5% improvement and as the result we reached the accuracy of 97.75%. It is expected that the developed model will contribute to prevent death and effective fetal health management, also disease prevention by predicting and managing the fetus'deaths and diseases accurately in advance.

Parameter Estimation in Debris Flow Deposition Model Using Pseudo Sample Neural Network (의사 샘플 신경망을 이용한 토석류 퇴적 모델의 파라미터 추정)

  • Heo, Gyeongyong;Lee, Chang-Woo;Park, Choong-Shik
    • Journal of the Korea Society of Computer and Information
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    • v.17 no.11
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    • pp.11-18
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    • 2012
  • Debris flow deposition model is a model to predict affected areas by debris flow and random walk model (RWM) was used to build the model. Although the model was proved to be effective in the prediction of affected areas, the model has several free parameters decided experimentally. There are several well-known methods to estimate parameters, however, they cannot be applied directly to the debris flow problem due to the small size of training data. In this paper, a modified neural network, called pseudo sample neural network (PSNN), was proposed to overcome the sample size problem. In the training phase, PSNN uses pseudo samples, which are generated using the existing samples. The pseudo samples smooth the solution space and reduce the probability of falling into a local optimum. As a result, PSNN can estimate parameter more robustly than traditional neural networks do. All of these can be proved through the experiments using artificial and real data sets.