• 제목/요약/키워드: proteomic

검색결과 507건 처리시간 0.022초

High Throughput Proteomic Approaches for the Dissection of Light Signal Transduction Pathways in Photosynthetic Cyanobacterium Synechocystis sp.PCC 6803

  • Chung Young-Ho;Park Young Mok
    • 한국미생물학회:학술대회논문집
    • /
    • 한국미생물학회 2002년도 추계학술대회
    • /
    • pp.203-205
    • /
    • 2002
  • Light is an environmental signal that regulates photomovement and main energy source of photosynthesis in the cyanobacterium Synechocystis sp. PCC 6803 (Syn6803). Syn6803 is a popular model system for study of plant functional genomics. In this report, we adopted 2D gel based proteomics study to investigate proteins related with the light absorption and photo-protection in Syn6803. More than 700 proteins were detected on the SDS-gels stained with silver nitrate. Several proteins showing different expression level under various light conditions were identified with MALDI-TOF Mass spectrometry. As a comparison, we also conducted ICAT-based proteome study using WT and cphl (cyanobacterial phytochrome 1) mutant. A cphl deletion led to changes in the expression of proteins involved in translation, photosynthesis including photosystem and CO2 fixation, and cellular regulation. We are currently involved in TAP-tagging method to study protein-protein interactions in search for the molecular component involved in the light signal transduction of Syn6803 photomovement.

  • PDF

Proteomic identification of the bovine pregnancy associated proteins by peptide mass fingerprinting

  • Kang, Sun-Chul;Kim, Eun-Jung;Pyo, Jae-Hoon;Lim, Jin-Kyu
    • 한국생물공학회:학술대회논문집
    • /
    • 한국생물공학회 2002년도 생물공학의 동향 (X)
    • /
    • pp.558-561
    • /
    • 2002
  • In this study, a method for the localization of pregnancy-specific proteins from cow urine on 2-D gel have been established. The proteins were digested with trypsin in gel and then analyzed with MALDI- TOF or transferred to a membrane and microsequenced. To examine the pregnancy associated protein spot 2 as a diagnosis marker in bovine urine 2-D western blotting was performed. This antibody was reacted specifically in the protein of pregnant cow’s urine. Consequently spot 2 was identified and found to be good candidates for developing cow pregnancy detection assay kit.

  • PDF

Evaluation of a Pretreatment Method for Two-Dimensional Gel Electrophoresis of Synovial Fluid Using Cartilage Oligomeric Matrix Protein as a Marker

  • Kong, Min-Kyung;Min, Byoung-Hyun;Lee, Pyung-Cheon
    • Journal of Microbiology and Biotechnology
    • /
    • 제22권5호
    • /
    • pp.654-658
    • /
    • 2012
  • Osteoarthritis (OA) is the most common rheumatic pathology. One of the major objectives of OA research is the development of early diagnostic strategies such as those using proteomic technology. Synovial fluid (SF) in OA patients is a potential source of biomarkers for OA. The efficient and reliable preparation of SF proteomes is a critical step towards biomarker discovery. In this study, we have optimized a pretreatment method for twodimensional gel electrophoresis (2DE) separation of the SF proteome, by enriching low-abundance proteins and simultaneously removing hyaluronic acid, albumin, and IgG. SF samples pretreated using this optimized method were then evaluated by 1DE and 2DE separation followed by immunodetection of cartilage oligomeric matrix protein (COMP), a known OA biomarker, and by the identification of 3 proteins (apolipoprotein, haptoglobin precursor, and fibrinogen D fragment) that are related to joint diseases.

실란 카르복실 표면을 사용한 단백질 칩 기판의 기능 분석 (Functional Analysis of Protein Chip Plate Using Silane Carboxylate Surface)

  • 김지현;송예신;윤미영;피재호
    • 한국표면공학회지
    • /
    • 제37권4호
    • /
    • pp.215-219
    • /
    • 2004
  • We fabricated protein chip plates coated with silane carboxylate. The silane compound was immobilized by hydrogen bond and/or other chemical bonds on the surface of the plate. The plates were then prepared by binding $Ni^{2+}$ to surfaces terminated with silane carboxylate groups. The carboxylic acid surface was generated by chemical oxidation of the terminal double-bond functions of the silane-deposited layer. The $Ni^{2+}$ ions on the surface reacted readily to His-tagged proteins. A significant increase in His-tagged protein adsorption was achieved on the surface terminated with silane carboxylate with longer alkyl chain, suggesting better availability of these protein chip plates for proteomic studies.

Proteomic Analysis of Osmotic Stress Response in Streptomyces coelicolor A3(2) Using 2-Dimentional Gel Electrophoresis and MALDI-TOF Mass Spectrometry

  • Cha, Chang-Jun;Lee, Eun-Jin;Roe, Jung-Rye
    • 한국생물물리학회:학술대회논문집
    • /
    • 한국생물물리학회 2002년도 제9회 학술 발표회 프로그램과 논문초록
    • /
    • pp.55-55
    • /
    • 2002
  • An alternative sigma factor as encoded by the $\sigma$$\^$B/ gene in Streptomyces coelicolor A3(2) was known to be involved in the differentiation and osmotic stress response. Protein expression profiles of wild-type and a $\sigma$$\^$B/ mutant strain of S coelicolor A3(2), which is impaired in defense against osmotic stress, were compared in the absence and presence of osmotic stress, using 2-dimentional gel electrophoresis.(omitted)

  • PDF