• 제목/요약/키워드: population variability

검색결과 271건 처리시간 0.029초

New polymorphic microsatellite markers in the Korean mi-iuy croaker, $Miichthys$ $miiuy$, and their application to the genetic characterization of wild and farmed populations

  • An, Hye-Suck;Kim, Eun-Mi;Lee, Jang-Wook;Kim, Dae-Jung;Kim, Yi-Cheong
    • Animal cells and systems
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    • 제16권1호
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    • pp.41-49
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    • 2012
  • Eighteen new polymorphic microsatellite markers were developed for the Korean mi-iuy croaker ($Miichthys$ $miiuy$, Perciformes, Sciaenidae), and allelic variability was compared between a wild population in Mokpo, Korea, and a hatchery population in Tongyeong, Korea. All loci were amplified readily and demonstrated allelic variability, with the number of alleles ranging from 5 to 37 in the wild population, and from 4 to 12 in the farmed population. The average observed and expected heterozygosities were estimated, respectively, to be 0.74 and 0.78 in the hatchery population samples, and 0.79 and 0.86 in the wild samples. These results indicate lower genetic variability in the hatchery population compared with the wild population, and significant genetic differentiation between the wild population and the hatchery samples ($F_{ST}$=0.058, P<0.001). These microsatellite loci may be valuable for future population genetic studies, monitoring changes in the genetic variation within stocks in a commercial breeding program, conservation genetics, and molecular assisted selective breeding of the mi-iuy croaker in the future.

Evaluation of Genetic Effects of Demographic Bottleneck in Muzzafarnagri Sheep from India Using Microsatellite Markers

  • Arora, R.;Bhatia, S.
    • Asian-Australasian Journal of Animal Sciences
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    • 제22권1호
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    • pp.1-6
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    • 2009
  • Genetic variability is an important component in the ability of populations to adapt in the face of environmental change. Severe human impacts reduced Muzzafarnagri sheep of India from 500,000 in 1972 to 10,989 in 1973-74. Here we report for the first time the effect of this population decline on levels of genetic variability at 13 FAO recommended ovine microsatellite loci and contrast levels of variability to that in a breed from the same geographical region, which differed in numbers, by an order of magnitude (Marwari sheep). Of the 13 loci, 100% were polymorphic in both breeds. A high degree of genetic variation was observed within populations in terms of both allele diversity (number of alleles per locus, >4) and gene diversity (expected heterozygosity, >0.5), which implied that there is still a substantial amount of genetic diversity at the nuclear loci in a declining population. Nevertheless, overall low number of alleles per locus and relatively less abundance of low frequency alleles in Muzzafarnagri sheep suggested that genetic variability has been comparatively reduced in this population. Bottleneck analysis indicated that a genetic bottleneck did not occur during the most recent decline. In addition, we found that the differentiation among populations was moderate ($F_{ST}$= 11.8%). This study on assessment of genetic effects of the population declines in ovines is a step towards identification of genetically impoverished or healthy populations, which could prove to be a useful tool to facilitate conservation planning in this important species of small ruminants.

청년층 고용통계의 변동성에 대한 지역별 비교분석: 경제활동참가율, 고용률, 실업률을 중심으로 (A Regional Comparison Study for the Variability of Employment Statistics in Korean Young Man: Focus on Economically Active Population Rate, Employment Population Rate, Unemployment Rate)

  • 박종태;장희선
    • 서비스연구
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    • 제5권1호
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    • pp.35-43
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    • 2015
  • 청년층 고용지표의 변동성에 대한 각 지역별 비교분석 결과는 중앙정부 및 지방자치단체의 실업대책이나 고용정책수립에 필요한 기초자료로서 중요하다. 이러한 비교분석 결과를 통하여 중앙정부 및 지방자치단체는 지역별 차별정책의 사용이 가능해 지는 동시에 세부적인 정책적용의 효율성도 제고시킬 수 있게 된다. 본 연구는 국내 경제활동인구조사 자료를 기초로하여 광역시와 도 지역 전체를 대상으로 청년층의 대표적인 고용통계 지표로서 경제활동참가율과 고용률 및 실업률 등을 고려하고 이 지표들의 변동성을 변동계수를 이용하여 광역자치단체 뿐만 아니라 각 시도별로 비교분석하였다. 또한, 세가지 고용지표 중 변동성이 가장 큰 고용지표를 제시하였고 각 고용지표에서 변동성이 가장 큰 광역자치단체를 제시하였다.

Assessing Bioequivalence of Variabilities in $2{\times}2$ Crossover Design

  • Park, Sang-Gue;Jang, Jung-Hoon
    • Journal of the Korean Data and Information Science Society
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    • 제18권3호
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    • pp.645-657
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    • 2007
  • Several statistical procedures for assessment of bioequivalence of variabilities between two drug formulations in bioequivalence trials are reviewed and modified methods for assessing total variability are suggested. The problem of the current US FDA aggregate criterion for population bioequivalence and the necessity of disaggregate criterion are discussed with an illustrated example.

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'닫힌 상자'에서의 복원추출에 의한 모비율 추측 활동수업 개발 및 적용 (An application and development of an activity lesson guessing a population ratio by sampling with replacement in 'Closed box')

  • 이기돈
    • 한국수학교육학회지시리즈A:수학교육
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    • 제57권4호
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    • pp.413-431
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    • 2018
  • In this study, I developed an activity oriented lesson to support the understanding of probabilistic and quantitative estimating population ratios according to the standard statistical principles and discussed its implications in didactical respects. The developed activity lesson, as an efficient physical simulation activity by sampling with replacement, simulates unknown populations and real problem situations through completely closed 'Closed Box' in which we can not see nor take out the inside balls, and provides teaching and learning devices which highlight the representativeness of sample ratios and the sampling variability. I applied this activity lesson to the gifted students who did not learn estimating population ratios and collected the research data such as the activity sheets and recording and transcribing data of students' presenting, and analyzed them by Qualitative Content Analysis. As a result of an application, this activity lesson was effective in recognizing and reflecting on the representativeness of sample ratios and recognizing the random sampling variability. On the other hand, in order to show the sampling variability clearer, I discussed appropriately increasing the total number of the inside balls put in 'Closed Box' and the active involvement of the teachers to make students pay attention to controlling possible selection bias in sampling processes.

참나무 천연집단(天然集團)의 엽형변이(葉型變異) (Variation of Leaf Form of Leaf Variabilities of Natural Population of Quercus spp.)

  • 김지문;권기원;문흥규
    • 한국산림과학회지
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    • 제71권1호
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    • pp.82-89
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    • 1985
  • 수종간(樹種間), 집단간(集團間), 집단내개체간(集團內個體間)의 변이(變異)를 밝히기 위(爲)해 신갈나무 10개(個) 천연집단(天然集團)과 졸참나무 9개(個) 천연집단(天然集團)의 엽형질변이(葉形質變異)를 조사(調査)하였다. 엽신장(葉身長)/최대엽폭(最大葉幅), 엽신장(葉身長)/엽병장(葉柄長), 엽신장(葉身長)/엽맥수(葉脈數), 상(上)1/3엽폭(葉幅)/최대엽폭(最大葉幅), 상(上)1/3엽폭(葉幅)/하(下)1/3엽폭(葉幅)의 5개(個) 엽형지수(葉型指數)와 엽병장(葉柄長), 엽맥수(葉脈數)가 본(本) 연구(硏究)에 포함(包含)되었다. 졸참나무의 엽신장(葉身長)/엽병장(葉柄長)을 제외(除外)한 조사(調査)된 모든 엽형질변이(葉形質變異)는 집단간(集團間), 집단내개체간(集團內個體間)에 고도(高度)의 유의적(有意的)인 차이(差異)를 보였다. 신갈나무와 졸참나무 다같이 엽신장(葉身長)/최대엽폭(最大葉幅), 엽신장(葉身長)/엽병장(葉柄長), 엽신장(葉身長)/엽맥수(葉脈數)의 지수(指數)에서 남부집단(南部集團)과 북부집단간(北部集團間)에 다른 엽형(葉型)을 나타냈다. 그리고 북부집단(北部集團)의 엽형(葉型)은 신갈나무의 독특(獨特)한 특성(特性)들과 더 유사(類似)하고 남부집단(南部集團)은 졸참나무의 독특(獨特)한 특성(特性)을 더 많이 지니고 있었다. 집단내개체목간(集團內個體木間)에 변이(變異)는 엽신장(葉身長)/엽병장(葉柄長), 엽병장(葉柄長)에서 더욱 두드러지게 나타났고 우리나라 중부(中部)에 하는 속(屬)하는 계룡산집단내(鷄龍山集團內)에서 더욱 현저(顯著)했다.

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Genetic Variability in the Natural Populations of Daba Ecorace of Tasar Silkworm (Antheraea mylitta Drury), as Revealed by ISSR Markers

  • Mohandas, T.P.;Vijayan, K.;Kar, P.K.;Awasthi, A.K.;Saratchandra, B.
    • International Journal of Industrial Entomology and Biomaterials
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    • 제8권2호
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    • pp.211-215
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    • 2004
  • Genetic diversity within the natural populations of Daba ecorace of Antheraea mylitta Drury was studied using individual silkworms collected from the South Singhbhum district of Jharkhand state of India with 21 inter simple sequence repeat (ISSR) primers. A total of 148 bands were produced, of which 79% was polymorphic. The pair wise genetic distance among the individuals varied from 0.186 to 0.329. The dendrogram grouped the individuals into 3 major clusters. Nei's heterozygosity analysis revealed 0.265 ${\times}$ 0.18 variability within the population. The high genetic variability present within the natural population of Daba ecorace of A. mylitta is indicative of their adaptational strategy in nature and have much importance for in situ conservation as well as utilization in breeding programs.

Algal genomics perspective: the pangenome concept beyond traditional molecular phylogeny and taxonomy

  • Lee, JunMo
    • Journal of Species Research
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    • 제10권2호
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    • pp.142-153
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    • 2021
  • Algal genomics approaches provide a massive number of genome/transcriptome sequences and reveal the evolutionary history vis-à-vis primary and serial endosymbiosis events that contributed to the biodiversity of photosynthetic eukaryotes in the eukaryote tree of life. In particular, phylogenomic methods using several hundred or thousands of genes have provided new insights into algal taxonomy and systematics. Using this method, many novel insights into algal species diversity and systematics occurred, leading to taxonomic revisions. In addition, horizontal gene transfers (HGTs) of functional genes have been identified in algal genomes that played essential roles in environmental adaptation and genomic diversification. Finally, algal genomics data can be used to address the pangenome, including core genes shared among all isolates and partially shared strain-specific genes. However, some aspects of the pangenome concept (genome variability of intraspecies level) conflict with population genomics concepts, and the issue is closely related to defining species boundaries using genome variability. This review suggests a desirable future direction to merge algal pangenomics and population genomics beyond traditional molecular phylogeny and taxonomy.

Genetic Variability between Ark Shell (Scapharca subcrenata, Lischke) Populations from Daecheon and Wonsan

  • 김선영;김종연;윤종만
    • 한국패류학회지
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    • 제25권1호
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    • pp.5-13
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    • 2009
  • Genomic DNA isolated from two geographical ark shell (Scapharca subcrenata) populations was amplified several times by PCR reactions. The ark shell population from Daecheon (ASPD) and from Wonsan (ASPW) in the West Sea and the East Sea of Korean Peninsula, respectively, obtained. The seven arbitrarily selected primers OPA-05, OPA-11, OPB-09, OPB-11, OPB-14, OPC-18 and OPD-07 were shown to generate the loci observed per primer, shared loci by each population, specific loci, unique shared loci to each population and shared loci by the two populations which could be clearly scored. Here, 862 loci were identified in the ASPD population, and 1,191 in the ASPW population: 137 specific loci (15.9%) in the Daecheon population and 84 (7.1%) in the Wonsan population. 407 shared loci by each population, with an average of 58.1 per primer, were observed in the ASPD population. 473 shared loci by each population, with an average of 67.6 per primer, were identified in the ASPW population. The numbers of specific loci in the ASPD and ASPW population were 137 and 84, respectively. Consequently, the average bandsharing value of individuals within the ASPW population was much higher than in the ASPD population. The bandsharing value between individuals' no. 08 and no. 13 was 0.628, which was the highest measured between the two geographical populations. The dendrogram obtained by the seven primers indicated three genetic clusters: cluster 1 (DAECHEON 01-DAECHEON 11), cluster 2 (WONSAN 12 and 14) and cluster 3 (WON SAN 13, 15, 16, 17, 18, 19, 20, 21 and 22). The genetic distance between the two geographical populations ranged from 0.043 to 0.499. Especially, individual no. 10 of Daecheon population was most distantly related to no. 14 of Wonsan population (genetic distance = 0.499).

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Geographic Variations between Jedo Venus Clam (Protothaca jedoensis, Lischke) Populations from Boryeong and Wonsan of Korea

  • Park, Gi-Sik;Yoon, Jong-Man
    • 한국패류학회지
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    • 제24권1호
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    • pp.11-24
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    • 2008
  • GDNA was isolated from the jedo venus clam (Protothaca jedoensis, Lischke) from Boryeong (jedo venus clam from Boryeong JVCB) and Wonsan (jedo venus clam from Wonsan; JVCW) located in the West Sea and the East Sea of Korean Peninsula, respectively and we performed clustering analyses, DNA polymorphisms and the populations genetic variations. In the present study, the seven decamer primer generated the one hundred and eleven major/minor specific bands in JVCB population and ninety four-specific bands in JVCW population. Seven primers generated the unique shared bands to each population of one hundred and seventy-six, on average of 25,1, in JVCB population from Boryeong and three hundred thirty, on average of 47,1, in JVCW population from Wonsan, respectively. The dendrogram obtained by the seven oligonucleotides primers, indicates two genetic clusters. Especially, two Protothaca between the individual WONSAN no. 12 and BORYEONG no. 10 showed the longest genetic distance (0.537) in comparison with other individuals used. Accordingly, RAPD analysis showed that the JVCB was a little more genetically diverse than the JVCW population. This result implies the genetic similarity owing to rearing in the same and/or similar circumstances or inbreeding within the JVCW population. So to speak, JVCB population may have high levels of genomic DNA variability owing to the introduction of the wild individuals from the other sites to sampling sites although it may be the geographically diverse distribution of this species. However, it was confirmed that it did not appear like that really in this study. We feel convinced that RAPD analysis discovered a significant genetic distance between two Protothaca population pairs (P<0.001). The existence of population discrimination and genetic diversity between two Protothaca populations was identified by RAPD analysis.

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