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Genetic Diversity and Spatial Structure of Symplocarpus renifolius on Mt. Cheonma, Korea

  • Jeong, Ji-Hee;Park, Yu-Jin;Kim, Zin-Suh
    • Korean Journal of Plant Resources
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    • v.20 no.6
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    • pp.530-539
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    • 2007
  • Genetic variation and structure of 9 subpopulations of Symplocarpus renifolius Schott ex Tzvelev on Mt. Cheonma, in Korea, were determined via starch-gel electrophoresis. The genetic diversity at 10 loci for 8 isozymes ($P_{99}=66%,\;A=2.26,\;H_o=0.212,\;H_e=0.230$) was found to be considerably higher than that seen in other long-lived perennial plants. On the whole, the genotype frequencies were in accordance with Hardy-Weinberg expectations. Approximately 5%($\theta=0.049$) of the total variability was among subpopulations. The high levels of observed genetic diversity in S. renifolius were attributed to a universal outcrossing system and other specific factors like differences in age classes and widely scattered individuals around the main distribution. Heterozygosity was highest at a mid-range of elevation($450m{\sim}600m$). The lowest heterozygosity at lower elevation was attributed to the possible origin of seeds transported by water from upstream regions during the monsoon season. Spatial structure in a subpopulation evidenced a strong autocorrelation between closer individuals within $3{\sim}4m$ of distance. This was assumed to be attributable to the restricted seed dispersal characteristics of S. renifolius. In accordance with the findings generated in this study, some implications regarding the conservation of S. renifolius at the Mt. Cheonma were also presented.

Estimation of PCDDs/PCDFs Intake for Korean Children and Their Mothers Through Daily Foods (음식물을 통한 어린이와 그들의 어머니에 대한 PCDDs/PCDFs 섭취량 평가)

  • Moon, Chan-Seok;Paik, Jong-Min
    • Journal of Environmental Health Sciences
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    • v.33 no.1 s.94
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    • pp.11-15
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    • 2007
  • This study was performed to evaluate the congeners of polychlorinated dibenzo-p-dioxins(PCDDS) and polychlorinated dibenzofurans(PCDFs) in Korean foods among children in Korea, in comparison with the findings in their mothers. The PCDDs and PCDFs intakes of 24-h diet duplicates were estimated from the previous Korean reports. In Korean children and their mothers of this study, major sources of lipid intake were plant-based foods(62% for children, 66% for their mothers). The women took 34% of lipid from animal sources, among which meats were leading sources of animal lipids(30%). Fish and shellfish were accounted for 4% in total lipid intake. Daily intake of PCDDs and PCDFs in the children md their mothers were 0.002-3.188 and 0.002-2.717 pg WHO-TEQ/day in animal sources and ND-0.283 and ND-0.296 pg WHO-TEQ/day in plant sources, respectively. PCDDs/PCDFs intake from animal origin was the major exposure source for both children and their mothers in Korea. Among the 17 PCDD/Fs congeners, 2,3,4,7,8-pentachlorodibenzofuran was assumed to be the effective exposure marker for diet intake.

Genetic diversity and phylogenetic analysis of genus Paeonia based on nuclear ribosomal DNA ITS sequence

  • Sun, Yan-Lin;Hong, Soon-Kwan
    • Journal of Plant Biotechnology
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    • v.38 no.3
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    • pp.234-240
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    • 2011
  • The genus Paeonia belongs to the family Paeoniaceae having significant medicinal and ornamental importance. The present investigation was undertaken with an aim to understand phylogenetic relationships of three Paeonia species (P. lactiflora, P. obovata, and P. suffruticosa) that are widely distributed in China, Korea, and Japan, using nuclear ribosomal DNA (nrDNA) internal transcribed spacer (ITS) sequence and to compare the phylogeny results with investigations reported earlier using existed sequences of the same species. The size variation obtained among sequenced nrDNA ITS region was narrow and ranged from 722 to 726 bp. The highest interspecific genetic distance (GD) was found between P. lactiflora and P. suffruticosa or P. obovata. The phylogram obtained using our nrDNA ITS sequences showed non-congruence with previous hypothesis of the phylogeny between section Paeonia and section Moutan of genus Paeonia. This result was supported by the phylogenetic relations showed in the phylogram constructed with existed sequences in NCBI. The present study suggested that P. obovata belonging to section Paeonia was phylogenetically closer to P. suffruticosa representing section Moutan of genus Paeonia than P. lactiflora belonging to section Paeonia. The main reason of the paraphyly of section Paeonia is thought to be nucleotide additivity directly caused by origin hybridization. This study provides more sequence sources of genus Paeonia, and will help for further studies in intraspecies population, and their phylogentic analysis and molecular evolution.

First Report of the Exotic Fig Weevil, Aclees taiwanensis Kôno (Coleoptera: Curculionidae) in Korea (한국에서 외래종 무화과곰보바구미(신칭), Aclees taiwanensis Kôno 발생 보고)

  • Hong, Ki-Jeong;Park, Deog Kee;Lee, So-Mi
    • Korean journal of applied entomology
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    • v.59 no.4
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    • pp.277-280
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    • 2020
  • During late July 2020, a species of weevil in the genus Aclees (Curculionidae, Molytinae) was found on several fig farms in the Haenam-gun district of Jeonnam Province, Korea. The weevil was subsequently identified as Aclees taiwanensis Kôno, 1933 (Coleoptera: Curculionidae), an exotic species, probably of subtropical and tropical Asian origin, that has also been introduced to Italy and France, where it is associated with severe damage to fig trees. This is the first report of an Aclees weevil in Korea.

Isolation and structural elucidation of the herbicidal active compounds from Ligularia stenocephala M.

  • Lim, Chi-Hwan;Cho, Chong-Woon
    • Korean Journal of Agricultural Science
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    • v.48 no.2
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    • pp.343-351
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    • 2021
  • Screening was conducted using 200 kinds of plant extracts to explore herbicide-activated components of plant origin. We separated and purified active substances and elucidated chemical structures using Ligularia stenocephala M., which has strong activity and has not yet been studied. When the solvent fractions of the leaves of Ligularia stenocephala M. were tested for their herbicidal activity, ethyl acetate and chloroform layer showed an inhibition rate of 95.2% and 94.1%, respectively. In particular, the chloroform layer exerted more than 50% herbicidal activity at 10 ppm. From the chloroform layer with the highest herbicidal activity, we isolated three herbicidal active compounds using stepwise chromatography, specifically silica gel or octadecyl silica (ODS) column chromatography, Sep-pak cartridges, and high performance liquid chromatography (HPLC). Based on the analysis of the active compounds using electron ionization mass spectroscopy (EI-MS), 1H-NMR, and 13C-NMR, we identified the active compounds as euparin, 5,6-dimethoxy-2-isopropenylbenzofuran, and liguhodgsonal. When the herbicidal activity of the identified compounds was tested, euparin showed selective herbicidal activity for lettuce at 10-3 M, and both liguhogsonal and 5,6-dimethoxy-2-isoprophenylbenzofuran exerted selective activity for rice and Echinochloa crus-galli.

Spatial and Temporal Genetic Diversity and Population Structure of Hemileia vastatrix from Peruvian Coffee Plantations

  • Quispe-Apaza, Cinthia;Mansilla-Samaniego, Roberto;Espejo-Joya, Rosa;Bernacchia, Giovanni;Yabar-Larios, Marisela;Lopez-Bonilla, Cesar
    • The Plant Pathology Journal
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    • v.37 no.3
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    • pp.280-290
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    • 2021
  • Population genetic studies of Hemileia vastatrix have been conducted in order to describe the evolutionary dynamics of the pathogen and the disease epidemiology as consequence of changes in disease management and host distribution occurred in Peru after the 2013 epidemic. These analyses were performed by sequencing the internal transcribed spacers of the nuclear ribosomal DNA (rDNA-ITS) of H. vastatrix collected from two coffee growing areas in 2014 and 2018. H. vastatrix population showed high haplotype diversity (Hd = 0.9373 ± 0.0115) with a low nucleotide diversity (π = 0.00322 ± 0.00018). Likewise, AMOVA indicated that fungus population has behaved as a large population without structuring by geographical origin and sampling years (FST = 0.00180, P = 0.20053 and FST = 0.00241, P = 0.19693, respectively). Additionally, the haplotype network based on intraspecific phylogenetic analysis of H. vastatrix using Peruvian and NCBI sequences revealed that Peruvian ancestral haplotypes, which were maintained in time and space, would correspond to the reported sequences of the races II and XXII. This result suggests that no substantial changes have occurred through time in Peruvian Hemileia vastatrix population.

Functional Haplotypes and Evolutionary Analyses of SBE1 in Collected Rice Germplasm

  • Thant Zin Maung;Yong-Jin Park
    • Proceedings of the Korean Society of Crop Science Conference
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    • 2022.10a
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    • pp.216-216
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    • 2022
  • The starch-branching enzymes (BEs) are responsible for synthesizing the amylopectin, which plays an important role in determining the structural and physical properties of starch granules. BE has two differently functioning isoforms (BEI and BEIIa/b) based on their difference in the chain-length pattern by the degree of polymerization (DP), which mainly contributes to the amylopectin chain length distribution in starch biosynthesis. In this study, we investigated functional haplotypes and evolutionary analyses of SBE1 in 374 rice accessions (320 Korean bred and 54 wild). The analyses were performed based on the classified subpopulations. Haplotype analysis generates a total of 8 haplotypes, of which only four haplotypes were functional carrying four functional SNPs in four different exons of SBE1 on chromosome 6. Nucleotide diversity analysis showed a highest pi-value in aromatic group (0.0029), while the lowest diversity value was in temperate japonica (0.0002), indicating the signal of this gene evolution origin. Different directional selections could be estimated by negative Tajima's D value of temperate japonica (-1.1285) and positive Tajima's D value of tropical japonica (0.9456), where the selective sweeps were undergone by both positive purifying and balancing selections. Phylogenetic analysis indicates a closer relationship of the wild with most of the cultivated subgroups indicating a common ancestor for SBE1 gene. FST-values indicate distant genetic relationships of temperate japonica from all other classified groups. PCA and population structure analysis show an admixed structure of wild and cultivated subpopulations in some proportions.

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Growth Root Tuber and Economic Yields of Chinese Yam and Their Relationship as Affected by Tuber Head Origin and Fertilizer Application Method (두부종류와 여비방법에 따른 장마의 생육, 괴근수량 및 상품성과 이들간의 관계)

  • 김영광
    • Korean Journal of Plant Resources
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    • v.8 no.2
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    • pp.201-207
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    • 1995
  • Chinese yam (Dioscorea Opposita Thanb) has been cultivated as medicinal crop and food. The experiment was carried out to determine the effect of tuber head origin and fertilizer application method on its agronomic characters of shoot and root tuber to get some imformation on its cultivation. The tuber head cultivated were cut from normal or branched root tuber. 37-28-32-2000 : N-P-K-Humus(Kg/10a) by dispersal but 30% N reduction of Con(RN) or strip application on the two-side of hill(SRN), were applied but N and K were given by the above method with the rate of 40% in March, 30% in June and 30% in July. Agronomic characteristics related to shoot and root tuber were measured and their relationship was analyzed. Tuber head origin had no effect on emergence rate, vine length, branch and node of vine, while emergence date of the tuber head from the normal root which showed the greatest emergence rate, vine length and node in Con treatment was earlier than the others. The tuber head from the normal root, furthermore, had greater length and diameter of root tuber harvested from the field and fresh weight per plant of per 10a compared to the tuber head from the branched root, whereas in both the normal and the branched tuber head RN had the worst result in the characters related to tuber yield except tuber diameter. The tuber head from the normal root produced heavier root tuber than that from the branched tuber and SRN had the best economic yield among the application methods, which resulted from production of less branched root tubers and their rate. In both the normal and the branched tuber head, moreover, yield per plant and economic yield were positively correlated to tuber length but negatively done to number. of branch of vine.

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Management of plant genetic resources at RDA in line with Nagoya Protocol

  • Yoon, Moon-Sup;Na, Young-Wang;Ko, Ho-Cheol;Lee, Sun-Young;Ma, Kyung-Ho;Baek, Hyung-Jin;Lee, Su-Kyeung;Lee, Sok-Young
    • Proceedings of the Korean Society of Crop Science Conference
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    • 2017.06a
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    • pp.51-52
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    • 2017
  • "Plant genetic resources for food and agriculture" means any genetic material of plant origin of actual or potential value for food and agriculture. "Genetic material" means any material of plant origin, including reproductive and vegetative propagating material, containing functional units of heredity. (Internal Treaty on Plant Genetic Resources for Food and Agriculture, ITPGRFA). The "Nagoya Protocol on Access to Genetic Resources and the Fair and Equitable Sharing of Benefits Arising from their Utilization (ABS) to the Convention on Biological Diversity (shortly Nagoya Protocol)" is a supplementary agreement to the Convention on Biological Diversity. It provides a transparent legal framework for the effective implementation of one of the three objectives of the CBD: the fair and equitable sharing of benefits arising out of the utilization of genetic resources. The Nagoya Protocol on ABS was adopted on 29 October 2010 in Nagoya, Japan and entered into force on 12 October 2014, 90 days after the deposit of the fiftieth instrument of ratification. Its objective is the fair and equitable sharing of benefits arising from the utilization of genetic resources, thereby contributing to the conservation and sustainable use of biodiversity. The Nagoya Protocol will create greater legal certainty and transparency for both providers and users of genetic resources by; (a) Establishing more predictable conditions for access to genetic resources and (b) Helping to ensure benefit-sharing when genetic resources leave the country providing the genetic resources. By helping to ensure benefit-sharing, the Nagoya Protocol creates incentives to conserve and sustainably use genetic resources, and therefore enhances the contribution of biodiversity to development and human well-being. The Nagoya Protocol's success will require effective implementation at the domestic level. A range of tools and mechanisms provided by the Nagoya Protocol will assist contracting Parties including; (a) Establishing national focal points (NFPs) and competent national authorities (CNAs) to serve as contact points for information, grant access or cooperate on issues of compliance, (b) An Access and Benefit-sharing Clearing-House to share information, such as domestic regulatory ABS requirements or information on NFPs and CNAs, (c) Capacity-building to support key aspects of implementation. Based on a country's self-assessment of national needs and priorities, this can include capacity to develop domestic ABS legislation to implement the Nagoya Protocol, to negotiate MAT and to develop in-country research capability and institutions, (d) Awareness-raising, (e) Technology Transfer, (f) Targeted financial support for capacity-building and development initiatives through the Nagoya Protocol's financial mechanism, the Global Environment Facility (GEF) (Nagoya Protocol). The Rural Development Administration (RDA) leading to conduct management agricultural genetic resources following the 'ACT ON THE PRESERVATION, MANAGEMENT AND USE OF AGRO-FISHERY BIO-RESOURCES' established on 2007. According to $2^{nd}$ clause of Article 14 (Designation, Operation, etc. of Agencies Responsible for Agro-Fishery Bioresources) of the act, the duties endowed are, (a) Matters concerning securing, preservation, management, and use of agro-fishery bioresources; (b) Establishment of an integrated information system for agro-fishery bioresources; (c) Matters concerning medium and long-term preservation of, and research on, agro-fishery bioresources; (d) Matters concerning international cooperation for agro-fishery bioresources and other relevant matters. As the result the RDA manage about 246,000 accessions of plant genetic resources under the national management system at the end of 2016.

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Development of horticultural program on community garden for social integration and communication in multicultural societies (다문화 시대의 사회통합과 소통을 위한 공동체정원에서의 원예활동 프로그램 개발)

  • Jang, Eu Jean
    • Journal of the Korean Society of Floral Art and Design
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    • no.37
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    • pp.33-48
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    • 2017
  • This study examines garden activity and garden plant preferences for development of the garden activity program using community garden aimed for communication and integration for multicultural age. As a result, for members of multicultural society had high portion of floral arrangement and crafts, growing plants in both indoors and outdoors garden for their garden activities, and using plants for cooking, growing plants in both indoors and outdoors garden was of higher portion for native korean. In the garden plant preferences, members of multicultural society liked ornamental plants the best, due to the environmental correspondence between the plant's place of origin and their home country, while native koreans tend to prefer vegetables, reflecting the recent interest in pro-environment crops and rise in demand of urban farming, veranda gardening and weekend farming. In this study, the garden activity program for communication and integration categorized the value of garden activity into three categories; the value of respect for life, the value of consideration through caring, the value of plant ethics, based on the above preference results. The value of respect for life can be achieved by understanding the meaning of life, experiencing the will to live, and understanding the characteristics of plants and me. The value of consideration of caring comes from waiting and nurturing for living things that are different from me and adapting to the environment as a living The value of plant ethics can give us the insights for human relationships, by understanding and experiencing the natural ecosystem and plant co-existing in it. The eight-session garden activity program also went through validity verification process by experts on gardening and multiculture, and the effectiveness of the program was proved.