• 한국해양학회지
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• v.21 no.3
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• pp.136-145
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• 1986

Biotope analysis(UPGM) of the data on the total benthic foraminferal assemblage (Kim and Han, 1982) collected from the southeastern sea off the Korean Peninsula shows that foraminiferal assemblages are related to the water masses prevailing in the study area. South Proper facies is governed by the Tsushima Warm Current, and Southern Deep facies is influenced by the cold water mass moved down along the bottom. Northern Nearshore facies is governed by the North Korea Cold Current, and North Proper facies is affected by the North Korea Cold Current and Japan Sea Proper Water. It is also evident that the upper part of the study area is under the influence of the North Korea Cold Current rather than the East Korea Warm Current which flows northward along/or off the right side of the study area. Planktonic foraminiferal occurrence also supports this biotope analysis.

• Journal of the korean society of oceanography
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• v.34 no.3
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• pp.151-166
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• 1999

Both benthic and planktonic foraminifera from Core 97-02 obtained in the northern East China Sea are quantitatively analyzed for reconstructing the paleocenography of late Quaternary. Since the earliest time of the core sediment (last not older than 18000 yr B.P.), the paleo-water depth has changed from less than 20 m to near 100 m at present, which is reflected by the benthic foraminiferal assemblages: before 14000 yr B.P., the water depth was shallower than 20 m; from 14000 to 7500 yr B.P., water depth was 20-50 m; and after 7500 yr B.P., water depth was 50-100 m. The foraminiferal fauna also disclose the water mass history: during the last glacial maximum, the water that dominated the study area might be the coastal water; at the end of the last glacial maximum(14000-9500 yr B.P.), the Yellow Sea Cold Water mostly affected this area; then it gave way to the Yellow Sea Warm Current after 9500 yr B.P.; and finally, the warm water has dominated this area since 9500 yr B.P. because of the westward shift and enhancement of the Kuroshio Current.

• 한국해양학회지
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• v.21 no.2
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• pp.73-84
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• 1986

Photometric Winkler titration provides high precision enough to use the oxygen method in moderately productive waters In short incubation (2-4hr), about $2{\mu\textrm{g}}C/\ell/h$ can be differentiated by the photometric titration. The oxygen and $^{14}C$ methods resulted in good agreement with each other in the diurnal primary production measurements. Despite small descrepancies the severe underestimation of $^{14}C-technique$ was not observed in short-term incubation. Size-fractionated production studies indicated the importance of nanoplanktonic production in the coastal water (62-88%). Bacterial respiration may lead to significant underestimation in estimating net photosynthesis in the oxygen method. In spite of some problems associated with the ecological application of antibiotics, it seems feasible to use Gentamycin in separating planktonic respiration from that of total community.

• Journal of Life Science
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• v.8 no.2
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• pp.173-180
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• 1998

As a part of the investigation on useful compounds from microalgae, and its recently that marine planktonic algae have been recognized as potial sources of antibacterial and antifungal substances, we searched for antimicrobial active compounds from the extracts of six microalgae-Lyngbya sp., Tetraselmis sp., Microcystis sp., Chlorella sp., Navicula sp. and Rhalassiosira sp.-treated with several solvents. There were two active species-Lyngbya ap., Teraselmis sp.- in the antimicrobial activity test to bacteria, yeast and molds, especially the activity existed in the extracts by ethyl acetate of supernatants to the microalgae incubatio. and there won’t any activity in two diatoms to the test microorganism.

• Journal of Periodontal and Implant Science
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• v.32 no.4
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• pp.827-836
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• 2002

The present study was performed to evaluate how cellular and humoral immune responses were perturbed by immunization of mixed periodontal bacterial biofilms. Each group of mice was immunizared with 1) Poqhyromonas gingivalis (P. gingivaliis) grown as a planktonic culture, 2) Fusobacterium nucleatum (F. nucleatum), 3) P. gingivalis grown as a biofilm, or 4) mixed P. gingivalis plus F. nucleatum grown as a biofilm culture, respectively. Immune mouse sera were collected from each mouse. Spleens were harvested to isolate T cells and consequently stimulated with antigen presenting cells and P. gingivalis whole cell antigen to establish P. gingivalis-specific T cell lines. There were no significant differences in the mean anti- gingivalis IgG antibody titers among mouse groups. Immunization of mice with pure P. gingivalis biofilm or mixed P gingivalis plus F. nucleatum biofilm resulted in significant reduction o f antibody avidity and opsonophagocytois function. INF-$\gamma$production by P. gingivalis-specific T cell lines was also substantially recluced in mouse groups immunized with the biofilm. It was concluded that P. gingivalis biofilm perturbs the cellular and humoral immune responses in periodontal disease.

• Microbiology and Biotechnology Letters
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• v.30 no.1
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• pp.86-90
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• 2002

Cooling water sampled at Pohang Steel Company, Korea, was used to study the effect of biocide (NaOCl) on biofilm formation and metal corrosion. Planktonic microorganisms were killed in the presence of biocide (0.2％ NaOCl) within 1.5 h, but not sessile microorganisms in biofilms even after one week. Black color of biofilms, possibly due to the activity of sulfate reducing bacteria, were made with the natural cooling waters, while orange color of biofilms were formed when cooling waters were autoclaved or when 0.2％ NaOCl was added to the natural cooling waters. Microbially influenced corrosion rate in black color of biofilms was 2.3 fold higher than that in orange color of biofilms.

• Journal of Environmental Science International
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• v.30 no.5
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• pp.369-378
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• 2021

In this study, we investigated the effects of indole on biofilm formation inhibition in Pantoea agglomerans (P. agglomerans). In the biofilm growth assay, indole inhibited biofilm formation across all the growth time. Depending on biofilm growth stage, indole exhibited biofilm inhibition and anti-bacterial effects on planktonic cells. Through the analysis of the proportion rate between biofilm and Colony Forming Units (CFU) and inhibition rate of indole, we confirmed that depending on the biofilm stage of P. agglomerans, indole treatment timing was more important than the treatment duration. By comparing gene expression rates through rt-qPCR P.agglomerans affected by indole was found to significantly change quorum sensing (pagI/R) and indole transportation (bssS) gene expressions. Throughout all, indole exhibited both antimicrobial and anti-biofilm effects on P. agglomerans. In addition, we confirmed the anti-biofilm effects of indole on mature biofilm. In conclusion, indole as a signal molecule, can exhibit anti-biofilm effects through bacterial quorum sensing inhibition and indole affects. Therefore, indole can regulate biofilm bacteria especially gram-negative opportunistic pathogens.

• Journal of Species Research
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• v.11 no.4
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• pp.321-329
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• 2022

Four species of cyanobacteria that are unrecorded in Korea were isolated from freshwater and brackish water. These four species are Laspinema thermale of Laspinemaceae, Planktothricoides raciborskii and Planktothrix spiroides of Microcoleaceae, and Cephalothrix lacustris of Phormidiaceae, all belonging to the order Oscillatoriales. Laspinema thermale is morphologically characterized as apical cells that are longer than other cells. In this strain, the similarity of the 16S rRNA gene sequence with the previously reported L. thermale strains were 99.30-99.50%. Planktothricoides raciborskii, which is characterized by bluntly conical morphology of apical cells, showed 98.80-99.50% of similarity of the 16S rRNA gene sequence to the previously reported P. raciborskii strains. Planktothrix spiroides are characterized by floating due to gas vacuoles. In this strain, the similarity of the 16S rRNA gene sequence with the previously reported P. spiroides strains were 99.80-99.90%. Cephalothrix lacustris, characterized by having calyptra in apical cells, showed 99.80-99.90% similarity of the 16S rRNA gene sequence to previously reported C. lacustris strains. Also, these species were clustered in the same clade in phylogenetic analysis using 16S rRNA gene sequences with each corresponding species.

• Mycobiology
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• v.49 no.6
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• pp.559-581
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• 2021

The coastal marine ecosystems of Vietnam are one of the global biodiversity hotspots, but the biodiversity of marine fungi is not well known. To fill this major gap of knowledge, we assessed the genetic diversity (ITS sequence) of 75 fungal strains isolated from 11 surface coastal marine and deeper waters in Nha Trang Bay and Van Phong Bay using a culture-dependent approach and 5 OTUs (Operational Taxonomic Units) of fungi in three representative sampling sites using next-generation sequencing. The results from both approaches shared similar fungal taxonomy to the most abundant phylum (Ascomycota), genera (Candida and Aspergillus) and species (Candida blankii) but were different at less common taxa. Culturable fungal strains in this study belong to 3 phyla, 5 subdivisions, 7 classes, 12 orders, 17 families, 22 genera and at least 40 species, of which 29 species have been identified and several species are likely novel. Among identified species, 12 and 28 are new records in global and Vietnamese marine areas, respectively. The analysis of enzyme activity and the checklist of trophic mode and guild assignment provided valuable additional biological information and suggested the ecological function of planktonic fungi in the marine food web. This is the largest dataset of marine fungal biodiversity on morphology, phylogeny and enzyme activity in the tropical coastal ecosystems of Vietnam and Southeast Asia. Biogeographic aspects, ecological factors and human impact may structure mycoplankton communities in such aquatic habitats.

• Food Science of Animal Resources
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• v.42 no.6
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• pp.1020-1030
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• 2022

The aim of the study was to investigate the effect of bacteriocin-like inhibitory substance (BLIS) from Enterococcus faecium DB1 on cariogenic Streptococcus mutans biofilm. Crystal violet staining, fluorescence, and scanning electron microscopy analyses demonstrated that the BLIS from Enterococcus faecium DB1 (DB1 BLIS) inhibited S. mutans biofilm. When DB1 BLIS was co-incubated with S. mutans, biofilm formation by S. mutans was significantly reduced (p<0.05). DB1 BLIS also destroyed the preformed biofilm of S. mutans. In addition, DB1 BLIS decreased the viability of S. mutans biofilm cells during the development of biofilm formation and in the preformed biofilm. DB1 BLIS significantly decreased the growth of S. mutans planktonic cells. Furthermore, S. mutans biofilm on the surface of saliva-coated hydroxyapatite discs was reduced by DB1 BLIS. Taken together, DB1 BLIS might be useful as a preventive and therapeutic agent against dental caries caused by S. mutans.