• 제목/요약/키워드: pair-wise estimation

검색결과 9건 처리시간 0.018초

Estimation of Effective Population Size in the Sapsaree: A Korean Native Dog (Canis familiaris)

  • Alam, M.;Han, K.I.;Lee, D.H.;Ha, J.H.;Kim, J.J.
    • Asian-Australasian Journal of Animal Sciences
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    • 제25권8호
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    • pp.1063-1072
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    • 2012
  • Effective population size ($N_e$) is an important measure to understand population structure and genetic variability in animal species. The objective of this study was to estimate $N_e$ in Sapsaree dogs using the information of rate of inbreeding and genomic data that were obtained from pedigree and the Illumina CanineSNP20 (20K) and CanineHD (170K) beadchips, respectively. Three SNP panels, i.e. Sap134 (20K), Sap60 (170K), and Sap183 (the combined panel from the 20K and 170K), were used to genotype 134, 60, and 183 animal samples, respectively. The $N_e$ estimates based on inbreeding rate ranged from 16 to 51 about five to 13 generations ago. With the use of SNP genotypes, two methods were applied for $N_e$ estimation, i.e. pair-wise $r^2$ values using a simple expectation of distance and $r^2$ values under a non-linear regression with respective distances assuming a finite population size. The average pair-wise $N_e$ estimates across generations using the pairs of SNPs that were located within 5 Mb in the Sap134, Sap60, and Sap183 panels, were 1,486, 1,025 and 1,293, respectively. Under the non-linear regression method, the average $N_e$ estimates were 1,601, 528, and 1,129 for the respective panels. Also, the point estimates of past $N_e$ at 5, 20, and 50 generations ago ranged between 64 to 75, 245 to 286, and 573 to 646, respectively, indicating a significant $N_e$ reduction in the last several generations. These results suggest a strong necessity for minimizing inbreeding through the application of genomic selection or other breeding strategies to increase $N_e$, so as to maintain genetic variation and to avoid future bottlenecks in the Sapsaree population.

다기준 의사결정 기반의 물류중개 에이전트 (Multi-Criteria Decision Making Based Logistics Brokerage Agents)

  • 정근채
    • 산업공학
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    • 제16권4호
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    • pp.473-484
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    • 2003
  • In this paper we deal with the logistics brokerage process in which a logistics agent intermediates between vehicle owners and shippers for matching empty vehicles and freights. Based on the Multi-Criteria Decision Making (MCDM) methodology, the proposed agent system matches the most preferred empty vehicle to the shipper and the most preferred freight to the vehicle owner. In the proposed agent system, an MCDM based sensitivity analysis is also used for supporting decision makers under negotiations. Among various MCDM methodologies, Analytic Hierarchy Process (AHP) is utilized in this paper. Although AHP is one of the most popular MCDM methodologies, AHP needs a number of pair-wise comparisons for assessing alternatives and hence may give excessive decision making burden to the decision makers. In this paper, in order to reduce the decision making burden, a preference function based estimation method is proposed. We can expect that the MCDM based logistics brokerage agent can be used as an efficient and effective tool for e-logistics marketplaces on the internet.

DCC 모형에서 동태적 상관계수 추정법의 효율성 비교 (Performance Comparison of Estimation Methods for Dynamic Conditional Correlation)

  • 이지호;성병찬
    • 응용통계연구
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    • 제28권5호
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    • pp.1013-1024
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    • 2015
  • 본 논문에서는 다변량 DCC(dynamic conditional correlation) GARCH 모형에서 동태적 상관계수를 추정하기 위한 대표적 방법인 쌍별 추정법과 다차원 추정법의 효율성을 비교한다. 이를 위하여 금융 시장의 변동성을 반영하는 다변량 시계열을 생성하고 이에 대한 DCC GARCH 모형을 수립 및 추정하는 시뮬레이션을 실시하였다. 또한 KOSPI 200 섹터지수를 이용하여 포트폴리오를 구성하고 이의 변동성 추정 및 VaR 계산을 통하여 동태적 상관계수 추정에 대한 정확성을 평가하였다. 그 결과로서, 전반적으로 다차원 추정법이 쌍별 추정법보다 우수함을 발견하였다. 특히, 다차원 추정법에서 상대적으로 상관관계가 낮은 시계열을 추가할수록 쌍별 시계열에 대한 동태적 상관계수 추정의 정확성을 높여줌을 발견하였다.

Validation on Residual Variation and Covariance Matrix of USSTRATCOM Two Line Element

  • Yim, Hyeon-Jeong;Chung, Dae-Won
    • Journal of Astronomy and Space Sciences
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    • 제29권3호
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    • pp.287-293
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    • 2012
  • Satellite operating agencies are constantly monitoring conjunctions between satellites and space objects. Two line element (TLE) data, published by the Joint Space Operations Center of the United States Strategic Command, are available as raw data for a preliminary analysis of initial conjunction with a space object without any orbital information. However, there exist several sorts of uncertainties in the TLE data. In this paper, we suggest and analyze a method for estimating the uncertainties in the TLE data through mean, standard deviation of state vector residuals and covariance matrix. Also the estimation results are compared with actual results of orbit determination to validate the estimation method. Characteristics of the state vector residuals depending on the orbital elements are examined by applying the analysis to several satellites in various orbits. Main source of difference between the covariance matrices are also analyzed by comparing the matrices. Particularly, for the Korea Multi-Purpose Satellite-2, we examine the characteristics of the residual variation of state vector and covariance matrix depending on the orbital elements. It is confirmed that a realistic consideration on the space situation of space objects is possible using information from the analysis of mean, standard deviation of the state vector residuals of TLE and covariance matrix.

화소기반 변이공간영상에서의 스테레오 정합 (A stereo matching algorithm in pixel-based disparity space image)

  • 김철환;이호근;하영호
    • 한국통신학회논문지
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    • 제29권6C호
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    • pp.848-856
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    • 2004
  • 본 논문은 안정적이며 빠르게 동작하는 화소기반 변이공간영상기반의 스테레오 정합방법을 제안한다. 스테레오영상은 서로 상이한 두 영상이 아니라 수평방향의 이동만이 존재하는 거의 유사한 명상이다. 따라서 큰 정합윈도우를 사용하는 정합방법이 꼭 필요하지는 않다. 그러나, 화소기반은 영상의 잡음에 매우 민감한 특성을 가지므로, 최적경로를 구하기 위한 동적계획법 과정 중, 비용행렬이 구해졌을 때, 그에 따라 함께 생성되는 방향요소들을 검사하여, 잡음에 의해 올바르지 않은 경로를 생성시킬 수 있는 방향들을 제거하는 방법을 사용한다. 실험결과는 제안한 방법이 대부분의 영상잡음에 의한 변이값의 잡음들을 효과적으로 제거하고, 매우 짧은 시간에 좋은 결과의 변이맵을 생성시킴을 보여준다.

작업환경 소음 개선을 위한 작업자 관점의 우선순위 파악에 관한 연구 (A Study on the Priority Ranks to Improve Work Environments in the Worker's Point of View)

  • 김화일
    • 한국산업보건학회지
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    • 제15권3호
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    • pp.202-212
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    • 2005
  • This study was aimed at rating the existing work environment noise components and alternatives in point of worker's view. To answer the purpose, AHP(Analytic Hierarchy Process) method is adopted in this research. Based on the AHP method, this research abstracts a mathematically rigorous noise components and alternative's weights and proven process for priority and decision-making. By reconstructing complex hearing conservation programs to a series of pair-wise comparisons, and then synthesizing the results, this study not only helps establishments of noise countermeasure, but also provides a clear rationale for noise alternatives. The result of this study is summarized as follows; 1) Job satisfaction index and noise identification index are 63, 56 respectively. 2) Noise level(15.7%), frequency(14.1%) and directivity(13.6%) are main reasons in worker's ground. 3) There are some difference between the estimation of worker's identification and that of work sites. 4) Low noise machine(14.7%), enclosure(13.2%) and shielding(9.6%) are chosen for noise protection method by workers. 5) Noise environment improvement should be focused on noise source rather than personal protection. 6) By the AHP method, noise source countermeasure have a key role at work environments.

역직구 상품 추천 및 판매가 추정을 위한 머신러닝 모델 (Machine Learning Model for Recommending Products and Estimating Sales Prices of Reverse Direct Purchase)

  • 김규익;볘르드바에브 예르갈리;김수형;김진석
    • 산업경영시스템학회지
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    • 제46권2호
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    • pp.176-182
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    • 2023
  • With about 80% of the global economy expected to shift to the global market by 2030, exports of reverse direct purchase products, in which foreign consumers purchase products from online shopping malls in Korea, are growing 55% annually. As of 2021, sales of reverse direct purchases in South Korea increased 50.6% from the previous year, surpassing 40 million. In order for domestic SMEs(Small and medium sized enterprises) to enter overseas markets, it is important to come up with export strategies based on various market analysis information, but for domestic small and medium-sized sellers, entry barriers are high, such as lack of information on overseas markets and difficulty in selecting local preferred products and determining competitive sales prices. This study develops an AI-based product recommendation and sales price estimation model to collect and analyze global shopping malls and product trends to provide marketing information that presents promising and appropriate product sales prices to small and medium-sized sellers who have difficulty collecting global market information. The product recommendation model is based on the LTR (Learning To Rank) methodology. As a result of comparing performance with nDCG, the Pair-wise-based XGBoost-LambdaMART Model was measured to be excellent. The sales price estimation model uses a regression algorithm. According to the R-Squared value, the Light Gradient Boosting Machine performs best in this model.

국내 소나무 집단에 있어서 cpSSR 표지자 변이체의 분포양상 (Distribution Pattern of cpSSR Variants in Korean Populations of Japanese Red Pine)

  • 홍용표;권해연;김용율
    • 한국산림과학회지
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    • 제95권4호
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    • pp.435-442
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    • 2006
  • 국내 소나무 19개 집단을 대상으로 cpSSR 표지자 분석을 통해서 관찰된 28개 변이체로부터 총 167개의 독특한 haplotype이 확인되었고, 동일한 haplotype을 보인 13개체가 10집단에 고르게 분포하였으며, 각 집단에서 관찰된 유효 haplotype의 수는 평균 13.37개로 나타났다. cpSSR haplotype의 집단내 다양도(He)는 0.987로 계산되어 기존의 임목을 대상으로 한 연구에서 보고된 수치와 유사하거나 약간 높은 수치를 보였다. 각 haplotype을 구성하고 있는 cpSSR 변이체를 대상으로 각 집단에서의 다양성(S.I.)을 계산한 결과 강원도 영월집단이 1.109로 계산되어 가장 높은 수치를 보였으며, 경북 문경집단이 0.411로 가장 낮은 수치를 보였다(평균 0.887), 관찰된 cpSSR 변이체들의 대부분이 19개 집단에 공통적으로 존재하는 것으로 나타났으며(97.62%), 집단간에 cpSSR 변이체 분화는 미약한 것으로 나타났는데(${\Phi}_{ST}=0.024$) cpSSR 표지자의 높은 돌연변이 발생빈도가 주요 원인인 것으로 추정된다. 반면에 비교 가능한 173개 집단 쌍 간에 동일한 haplotype이 전혀 존재하지 않는 집단 쌍이 39쌍으로 나타나 집단간의 유전적 유연관계에 대한 직접적인 비교가 불가능했으며, 따라서 분석된 19개 집단간에 유전적 교류가 자유롭게 일어나지 않는 것으로 나타났다. cpSSR 표지자 변이체의 분포양상과 기존의 I-SSR 표지자 변이체의 분포양상을 비교 고찰해 볼 때 국내 소나무 유전자원의 효율적인 관리를 위해서는 분석된 소나무 집단의 현재 위치 정보와 유전정보가 함께 고려되어야할 것으로 생각된다.

Whole-genome association and genome partitioning revealed variants and explained heritability for total number of teats in a Yorkshire pig population

  • Uzzaman, Md. Rasel;Park, Jong-Eun;Lee, Kyung-Tai;Cho, Eun-Seok;Choi, Bong-Hwan;Kim, Tae-Hun
    • Asian-Australasian Journal of Animal Sciences
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    • 제31권4호
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    • pp.473-479
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    • 2018
  • Objective: The study was designed to perform a genome-wide association (GWA) and partitioning of genome using Illumina's PorcineSNP60 Beadchip in order to identify variants and determine the explained heritability for the total number of teats in Yorkshire pig. Methods: After screening with the following criteria: minor allele frequency, $MAF{\leq}0.01$; Hardy-Weinberg equilibrium, $HWE{\leq}0.000001$, a pair-wise genomic relationship matrix was produced using 42,953 single nucleotide polymorphisms (SNPs). A genome-wide mixed linear model-based association analysis (MLMA) was conducted. And for estimating the explained heritability with genome- or chromosome-wide SNPs the genetic relatedness estimation through maximum likelihood approach was used in our study. Results: The MLMA analysis and false discovery rate p-values identified three significant SNPs on two different chromosomes (rs81476910 and rs81405825 on SSC8; rs81332615 on SSC13) for total number of teats. Besides, we estimated that 30% of variance could be explained by all of the common SNPs on the autosomal chromosomes for the trait. The maximum amount of heritability obtained by partitioning the genome were $0.22{\pm}0.05$, $0.16{\pm}0.05$, $0.10{\pm}0.03$ and $0.08{\pm}0.03$ on SSC7, SSC13, SSC1, and SSC8, respectively. Of them, SSC7 explained the amount of estimated heritability along with a SNP (rs80805264) identified by genome-wide association studies at the empirical p value significance level of 2.35E-05 in our study. Interestingly, rs80805264 was found in a nearby quantitative trait loci (QTL) on SSC7 for the teat number trait as identified in a recent study. Moreover, all other significant SNPs were found within and/or close to some QTLs related to ovary weight, total number of born alive and age at puberty in pigs. Conclusion: The SNPs we identified unquestionably represent some of the important QTL regions as well as genes of interest in the genome for various physiological functions responsible for reproduction in pigs.