• Title/Summary/Keyword: pair-wise estimation

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Estimation of Effective Population Size in the Sapsaree: A Korean Native Dog (Canis familiaris)

  • Alam, M.;Han, K.I.;Lee, D.H.;Ha, J.H.;Kim, J.J.
    • Asian-Australasian Journal of Animal Sciences
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    • v.25 no.8
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    • pp.1063-1072
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    • 2012
  • Effective population size ($N_e$) is an important measure to understand population structure and genetic variability in animal species. The objective of this study was to estimate $N_e$ in Sapsaree dogs using the information of rate of inbreeding and genomic data that were obtained from pedigree and the Illumina CanineSNP20 (20K) and CanineHD (170K) beadchips, respectively. Three SNP panels, i.e. Sap134 (20K), Sap60 (170K), and Sap183 (the combined panel from the 20K and 170K), were used to genotype 134, 60, and 183 animal samples, respectively. The $N_e$ estimates based on inbreeding rate ranged from 16 to 51 about five to 13 generations ago. With the use of SNP genotypes, two methods were applied for $N_e$ estimation, i.e. pair-wise $r^2$ values using a simple expectation of distance and $r^2$ values under a non-linear regression with respective distances assuming a finite population size. The average pair-wise $N_e$ estimates across generations using the pairs of SNPs that were located within 5 Mb in the Sap134, Sap60, and Sap183 panels, were 1,486, 1,025 and 1,293, respectively. Under the non-linear regression method, the average $N_e$ estimates were 1,601, 528, and 1,129 for the respective panels. Also, the point estimates of past $N_e$ at 5, 20, and 50 generations ago ranged between 64 to 75, 245 to 286, and 573 to 646, respectively, indicating a significant $N_e$ reduction in the last several generations. These results suggest a strong necessity for minimizing inbreeding through the application of genomic selection or other breeding strategies to increase $N_e$, so as to maintain genetic variation and to avoid future bottlenecks in the Sapsaree population.

Multi-Criteria Decision Making Based Logistics Brokerage Agents (다기준 의사결정 기반의 물류중개 에이전트)

  • Jeong, Keun-Chae
    • IE interfaces
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    • v.16 no.4
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    • pp.473-484
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    • 2003
  • In this paper we deal with the logistics brokerage process in which a logistics agent intermediates between vehicle owners and shippers for matching empty vehicles and freights. Based on the Multi-Criteria Decision Making (MCDM) methodology, the proposed agent system matches the most preferred empty vehicle to the shipper and the most preferred freight to the vehicle owner. In the proposed agent system, an MCDM based sensitivity analysis is also used for supporting decision makers under negotiations. Among various MCDM methodologies, Analytic Hierarchy Process (AHP) is utilized in this paper. Although AHP is one of the most popular MCDM methodologies, AHP needs a number of pair-wise comparisons for assessing alternatives and hence may give excessive decision making burden to the decision makers. In this paper, in order to reduce the decision making burden, a preference function based estimation method is proposed. We can expect that the MCDM based logistics brokerage agent can be used as an efficient and effective tool for e-logistics marketplaces on the internet.

Performance Comparison of Estimation Methods for Dynamic Conditional Correlation (DCC 모형에서 동태적 상관계수 추정법의 효율성 비교)

  • Lee, Jiho;Seong, Byeongchan
    • The Korean Journal of Applied Statistics
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    • v.28 no.5
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    • pp.1013-1024
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    • 2015
  • We compare the performance of two representative estimation methods for the dynamic conditional correlation (DCC) GARCH model. The first method is the pairwise estimation which exploits partial information from the paired series, irrespective to the time series dimension. The second is the multi-dimensional estimation that uses full information of the time series. As a simulation for the comparison, we generate a multivariate time series similar to those observed in real markets and construct a DCC GARCH model. As an empirical example, we constitute various portfolios using real KOSPI 200 sector indices and estimate volatility and VaR of the portfolios. Through the estimated dynamic correlations from the simulation and the estimated volatility and value at risk (VaR) of the portfolios, we evaluate the performance of the estimations. We observe that the multi-dimensional estimation tends to be superior to pairwise estimation; in addition, relatively-uncorrelated series can improve the performance of the multi-dimensional estimation.

Validation on Residual Variation and Covariance Matrix of USSTRATCOM Two Line Element

  • Yim, Hyeon-Jeong;Chung, Dae-Won
    • Journal of Astronomy and Space Sciences
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    • v.29 no.3
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    • pp.287-293
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    • 2012
  • Satellite operating agencies are constantly monitoring conjunctions between satellites and space objects. Two line element (TLE) data, published by the Joint Space Operations Center of the United States Strategic Command, are available as raw data for a preliminary analysis of initial conjunction with a space object without any orbital information. However, there exist several sorts of uncertainties in the TLE data. In this paper, we suggest and analyze a method for estimating the uncertainties in the TLE data through mean, standard deviation of state vector residuals and covariance matrix. Also the estimation results are compared with actual results of orbit determination to validate the estimation method. Characteristics of the state vector residuals depending on the orbital elements are examined by applying the analysis to several satellites in various orbits. Main source of difference between the covariance matrices are also analyzed by comparing the matrices. Particularly, for the Korea Multi-Purpose Satellite-2, we examine the characteristics of the residual variation of state vector and covariance matrix depending on the orbital elements. It is confirmed that a realistic consideration on the space situation of space objects is possible using information from the analysis of mean, standard deviation of the state vector residuals of TLE and covariance matrix.

A stereo matching algorithm in pixel-based disparity space image (화소기반 변이공간영상에서의 스테레오 정합)

  • 김철환;이호근;하영호
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.29 no.6C
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    • pp.848-856
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    • 2004
  • In this paper, a fast stereo matching algorithm based on pixel-wise matching strategy, which can get a stable and accurate disparity map, is proposed. Since a stereo image pair has small differences each other and the differences between left and right images are just caused by horizontal shifts with some order, the matching using a large window will not be needed within a given search range. However, disparity results of conventional pixel-based matching methods are somewhat unstable and wrinkled, the principal direction of disparities is checked by the accumulated cost along a path on array with the dynamic programming method. Experimental results showed that the proposed method could remove almost all disparity noise and set a good quality disparity map in very short time.

A Study on the Priority Ranks to Improve Work Environments in the Worker's Point of View (작업환경 소음 개선을 위한 작업자 관점의 우선순위 파악에 관한 연구)

  • Kim, Hwa-Il
    • Journal of Korean Society of Occupational and Environmental Hygiene
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    • v.15 no.3
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    • pp.202-212
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    • 2005
  • This study was aimed at rating the existing work environment noise components and alternatives in point of worker's view. To answer the purpose, AHP(Analytic Hierarchy Process) method is adopted in this research. Based on the AHP method, this research abstracts a mathematically rigorous noise components and alternative's weights and proven process for priority and decision-making. By reconstructing complex hearing conservation programs to a series of pair-wise comparisons, and then synthesizing the results, this study not only helps establishments of noise countermeasure, but also provides a clear rationale for noise alternatives. The result of this study is summarized as follows; 1) Job satisfaction index and noise identification index are 63, 56 respectively. 2) Noise level(15.7%), frequency(14.1%) and directivity(13.6%) are main reasons in worker's ground. 3) There are some difference between the estimation of worker's identification and that of work sites. 4) Low noise machine(14.7%), enclosure(13.2%) and shielding(9.6%) are chosen for noise protection method by workers. 5) Noise environment improvement should be focused on noise source rather than personal protection. 6) By the AHP method, noise source countermeasure have a key role at work environments.

Machine Learning Model for Recommending Products and Estimating Sales Prices of Reverse Direct Purchase (역직구 상품 추천 및 판매가 추정을 위한 머신러닝 모델)

  • Kyu Ik Kim;Berdibayev Yergali;Soo Hyung Kim;Jin Suk Kim
    • Journal of Korean Society of Industrial and Systems Engineering
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    • v.46 no.2
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    • pp.176-182
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    • 2023
  • With about 80% of the global economy expected to shift to the global market by 2030, exports of reverse direct purchase products, in which foreign consumers purchase products from online shopping malls in Korea, are growing 55% annually. As of 2021, sales of reverse direct purchases in South Korea increased 50.6% from the previous year, surpassing 40 million. In order for domestic SMEs(Small and medium sized enterprises) to enter overseas markets, it is important to come up with export strategies based on various market analysis information, but for domestic small and medium-sized sellers, entry barriers are high, such as lack of information on overseas markets and difficulty in selecting local preferred products and determining competitive sales prices. This study develops an AI-based product recommendation and sales price estimation model to collect and analyze global shopping malls and product trends to provide marketing information that presents promising and appropriate product sales prices to small and medium-sized sellers who have difficulty collecting global market information. The product recommendation model is based on the LTR (Learning To Rank) methodology. As a result of comparing performance with nDCG, the Pair-wise-based XGBoost-LambdaMART Model was measured to be excellent. The sales price estimation model uses a regression algorithm. According to the R-Squared value, the Light Gradient Boosting Machine performs best in this model.

Distribution Pattern of cpSSR Variants in Korean Populations of Japanese Red Pine (국내 소나무 집단에 있어서 cpSSR 표지자 변이체의 분포양상)

  • Hong, Yong-Pyo;Kwon, Hae-Yun;Kim, Yong-Yul
    • Journal of Korean Society of Forest Science
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    • v.95 no.4
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    • pp.435-442
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    • 2006
  • A total of 167 peculiar haplotypes confirmed from 28 cpSR variants that were observed in 19 populations of Japanese red pine in Korea through cpSSR marker analysis. Thirteen individuals that showed identical haplotype dispersed evenly in 10 populations, and the average number of effective haplotype within population was 13.37. Estimate of genetic diversity (He) was 0.987 on the basis of cpSSR haplotype variants that was equivalent to or higher than the estimates reported in other studies on some forest tree species. Estimation of genetic diversity (S.I.) on the basis of cpSSR variants composing each haplotype revealed the highest estimate of 1.109 for the population of Gangwon-Yeongwol and the lowest estimate of 0.411 for the population of Gyeongbuk Mungyeong with the average of 0.887. Most of observed cpSSR variants appeared to exist commonly in 19 populations (97.62%), and genetic differentiation of cpSSR variants among populations was turned out to be weak (${\Phi}_{ST}=0.024$). Relatively fast rate of mutation of cpSSR marker might be a major cause for such weak population differentiation. There was no identical haplotype shared between 39 population pairs of 173 pair-wise population pairs. Estimation of genetic distance among 19 populations on the basis of population pairs was also impossible, that might be resulted from restricted migration among 19 populations. Considering the observed distribution patterns of cpSSR variants in addition to the previous studies on I-SSR variants, informations on the present geographic location and genetic status of populations should be considered together for effective sustainable management of the genetic resources of Japanese red pine in Korea.

Whole-genome association and genome partitioning revealed variants and explained heritability for total number of teats in a Yorkshire pig population

  • Uzzaman, Md. Rasel;Park, Jong-Eun;Lee, Kyung-Tai;Cho, Eun-Seok;Choi, Bong-Hwan;Kim, Tae-Hun
    • Asian-Australasian Journal of Animal Sciences
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    • v.31 no.4
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    • pp.473-479
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    • 2018
  • Objective: The study was designed to perform a genome-wide association (GWA) and partitioning of genome using Illumina's PorcineSNP60 Beadchip in order to identify variants and determine the explained heritability for the total number of teats in Yorkshire pig. Methods: After screening with the following criteria: minor allele frequency, $MAF{\leq}0.01$; Hardy-Weinberg equilibrium, $HWE{\leq}0.000001$, a pair-wise genomic relationship matrix was produced using 42,953 single nucleotide polymorphisms (SNPs). A genome-wide mixed linear model-based association analysis (MLMA) was conducted. And for estimating the explained heritability with genome- or chromosome-wide SNPs the genetic relatedness estimation through maximum likelihood approach was used in our study. Results: The MLMA analysis and false discovery rate p-values identified three significant SNPs on two different chromosomes (rs81476910 and rs81405825 on SSC8; rs81332615 on SSC13) for total number of teats. Besides, we estimated that 30% of variance could be explained by all of the common SNPs on the autosomal chromosomes for the trait. The maximum amount of heritability obtained by partitioning the genome were $0.22{\pm}0.05$, $0.16{\pm}0.05$, $0.10{\pm}0.03$ and $0.08{\pm}0.03$ on SSC7, SSC13, SSC1, and SSC8, respectively. Of them, SSC7 explained the amount of estimated heritability along with a SNP (rs80805264) identified by genome-wide association studies at the empirical p value significance level of 2.35E-05 in our study. Interestingly, rs80805264 was found in a nearby quantitative trait loci (QTL) on SSC7 for the teat number trait as identified in a recent study. Moreover, all other significant SNPs were found within and/or close to some QTLs related to ovary weight, total number of born alive and age at puberty in pigs. Conclusion: The SNPs we identified unquestionably represent some of the important QTL regions as well as genes of interest in the genome for various physiological functions responsible for reproduction in pigs.