• Title/Summary/Keyword: origin of species

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Bacterial Community Monitoring of Commercial Kimchi Produced in Korea and China with Evidence of Bacilli Spore Formation during Fermentation (한국산 및 중국산 김치의 Bacteria 군집 분석 및 발효과정 중 Bacilli 포자 형성 규명)

  • An, Doohyun;Kim, Hye-Rim;Jeong, Do-Won;Caldwell, Jane M.;Lee, Jong-Hoon
    • Microbiology and Biotechnology Letters
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    • v.42 no.2
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    • pp.121-130
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    • 2014
  • Terminal Restriction Fragment Length Polymorphism (T-RFLP) analysis was adopted to explore rapid differentiation in the diversity and dynamics of bacteria in kimchi made in Korea and China for future application in kimchi origin discrimination. T-RFLP analysis supported the reproducible and rapid detection of major lactic acid bacteria known to be involved in kimchi fermentation. The taxonomic resolution level of this T-RFLP analysis was between the species and genus level, but was not specific enough for the detection of a bacterium found only in one origin, either Korea or China. The bacterial community structure successions in kimchi samples from Korea and China analyzed by T-RFLP analysis occurred with a similar pattern. Bacillus spp. which were not detected in the early microbial studies of kimchi were constantly detected until the late fermentation stage of kimchi in our T-RFLP analysis and their existence was proved by culture-based identification. Additionally, sporulation of Bacillus spp. during kimchi fermentation was discovered.

Quantitative analysis of rutin content using silkworm genetic resources

  • Ju, Wan-Taek;Kim, Kee-Young;Sung, Gyoo-Byung;Kim, Yong-Soon
    • International Journal of Industrial Entomology and Biomaterials
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    • v.31 no.2
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    • pp.56-61
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    • 2015
  • Rutin is an important bioflavonoid that is consumed in the daily diet. This study compared the functional components of rutin from various silkworm species using a gene database with those of rutin produced by silkworms selectively bred through cross-combinations. We made comparisons between the geographical origin and species of silkworm using a gene database and discovered that rutin activity was ranked in the following order by species, Chinese (C5)> miscellaneous varieties (Jamsaeng 1 Ho) >Japanese (Jam 115) > European (E58) >Korean (Sun 3 ho). However, rutin levels with respect to various genetic traits (blood color, silk color, and egg color) were consistent. In order to study rutin changes that occurred during the cross breeding of the silkworm gene, we bred cross-combinations utilizing Jam 115 and the 4051 silkworms. In conclusion, in order to provide information about the constituents of functional materials contained in silkworm powder, it is imperative that silkworm cross breeding occurs so that the database of functional materials extracted from silkworms will expand.

First Record of the Western Conifer Seed Bug, Leptoglossus occidentalis Heidemann (Heteroptera: Coreidae) in Korea (소나무허리노린재(국명신칭), Leptoglossus occidentalis Heidemann (Heteroptera: Coreidae)의 한국 내 신 분포 기록)

  • Yoon, Chun-Sik;Kim, Hyoung-Gon;Park, Jong-Dae;Choi, Won-Young;Choi, Hyeok-Jae;Cheong, Seon-Woo
    • Journal of Environmental Science International
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    • v.21 no.8
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    • pp.1009-1013
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    • 2012
  • Leptoglossus occidentalis Heidemann, 1910 was newly recorded in Korea as a invasive species at Gyeongsangnam-do, Korea in 2010 and 2011. Leptoglossus Guerin-Meneville, 1831 is also newly recorded Coreid genus in Korea. The diagnostic shape is expanded leaf-like hind tibiae. The origin of this species is North America and it has been rapidly propagated around the world as a pest. This bug recognized as a pest on almost of Pinaceae plants and they suck on developing cones, so the monitoring on the present invasion of this species in Korea is urgent. It was presumed that the invasion of Leptoglossus occidentalis into Korea was before 2010 with present study.

Characterization of the complete mitochondrial genome of Mauritian sardinella, Sardinella jussieu (Lacepède, 1803), collected in the Banten Bay, Indonesia

  • Sektiana, Sinar Pagi;Andriyono, Sapto;Kim, Hyun-Woo
    • Fisheries and Aquatic Sciences
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    • v.20 no.10
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    • pp.26.1-26.9
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    • 2017
  • Fishes in genus Sardinella are small pelagic species, which plays an important role in marine ecosystem as the first consumer. Those species are also commercially important, whose total catch reaches 278,600 tons in 2011 in Indonesia, but their identification has been difficult for their morphological similarity. In this study, we reported Sardinella jussieu for the first time in Indonesian coastal area (Banten Bay, Indonesia, $6^{\circ}\;0^{\prime}\;50.00^{{\prime}{\prime}}\;S-106^{\circ}\;10^{\prime}\;21.00^{{\prime}{\prime}}\;E$). We were able to confirm the species by both its morphological characteristics including the black spot at dorsal fin origin, the dusky pigmentation at caudal fin, 31 total scute numbers, and DNA sequence identity in the GenBank database by the molecular analysis. Its total mitochondrial genome was determined by the combination of next-generation sequencing and typical PCR strategy. The total mitochondrial genome of Sardinella jussieu (16,695 bp) encoded 13 proteins, 2 ribosomal RNAs, 22 transfer RNAs, and the putative control region. All protein-coding genes started with ATG and typical stop codon and ended with TAA or TAG except for ND4 in which AGA is used. Phylogenetic analyses of both COI region and full mitochondrial genome showed that S. jussieu is most closely related to Sardinella albella and Sardinella gibbosa

Recent Advances in the Seborrheic Dermatitis (지루성 피부염의 최신 지견)

  • Cha, Jae-Hoon;Nam, Hae-Jeong;Kim, Hee-Jeong;Park, Owe-Suk;Kim, Keoo-Seok;Kim, Yoon-Bum
    • The Journal of Korean Medicine Ophthalmology and Otolaryngology and Dermatology
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    • v.19 no.3 s.31
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    • pp.118-133
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    • 2006
  • Seborrheic dermatitis is characterized by the appearance of red, flacking, greasy lesions in regions rich in sebaceous glands. There are various opinions about the relation between seborrheic dermatitis and dandruff. Considering all available data, we consider seborrheic dermatitis and dandruff to be differing severity manifestations of similar origin. The known etiologies of seborrheic dermatitis are the abnormality of lipid and hormnes, Malassezia species, immune response. We recently focus on the relation between seborrheic dermatitis and HIV positive and AIDS patients, seborrheic dermatitis and neurological disease. The treatments of seborrheic dermatitis include topical treatments, oral treatments. There are non-specific agents, antifungal medication, corticosteroids in the topical treatments. Narrow band UVB and oral medications are known as the prophylaxis of seborrheic dermatitis but we need further study. In traditional korean medicine, the literature studies and case reports have been published. But we don't know what herbal medicine has antifungal effect against Malassezia species. So we should discriminate herbal medicines which have antifungal effect against Malassezia specieses. Then we could treat seborreic dermatitis by traditional korean medicine effectively.

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Three Unrecorded Marine Fish Species from Korean Waters

  • Park, Jeong-Ho;Kim, Jin-Koo;Moon, Jee-Hwan;Kim, Cheol-Bum
    • Ocean Science Journal
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    • v.42 no.4
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    • pp.231-240
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    • 2007
  • Three marine fish species are recorded for the first time from Korean waters: a molid (Ranzania laevis, 1 specimen, 279.8 mm SL) and bramid (Pterycombus petersii, 3 specimens, 95.3-214.0 mm SL) collected from a large purse seine off Jeju Island, in the southern sea of Korea, and a carangid (Carangoides dinema, 1 specimen, 194.5 mm SL) from a set net in coastal waters off Busan, in the southeastern sea of korea. R. laevis is characterized by a wedge-shaped body and truncated clavus; P. petersii by the dorsal fin origin above or behind the posterior margin of eye, and dorsal and anal fins depressible; and C. dinema by a row of black blotches along the second dorsal fin base, the curved part of the lateral line longer than straight part, and 18 and 16 dorsal and anal fin rays, respectively. New Korean names are proposed for all three species.

A Report on the Occurrence of and Crop Damage Caused by Hyphantria cunea (Drury) with in Korea (국내 미국흰불나방의 최근 발생 및 피해 보고)

  • Kim, Dong-Eon;Kil, Ji-Hyon
    • Korean journal of applied entomology
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    • v.51 no.3
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    • pp.285-293
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    • 2012
  • Occurrence Hyphantria cunea was confirmed in 35 cities and counties nationwide in 2011, each of which reported some form of crop and/or ecological damage caused by the moth. Only a larva of the black-headed form were reported to have occurred in the nation. H. cunea was found in street trees 66.7%, followed by landscape trees 19.4% and forests 13.9%. This suggests that artificial environment 86.1% suffered from H. cunea more severely than natural forests. The study identified 44 families and 102 species of host plants, and found an additional 29 species, to those which had been identified in previous studies. At present, the identified host plants of H. cunea are composed of 62 families and 219 species in total since their first appearance was reported approximately 50 years ago. Host plants include 5 species of food crops (2.3%), 6 species of vegetables (2.7%), 4 species of medicinal crops (1.8%), 1 species of industrial crops (0.5%), 13 species of fruit trees (5.9%), 6 species of other trees crops (2.7%) as well as a further 5 species of farmed crops (2.3%). Seven species of host plants (18.4%) originate from North America where Hyphantria cunea has been introduced from, while 11 species (29.0%) are from China and Japan, Europe and India were the native sources of (10.5%) of the origin with 4 species, respectively. Seventeen species of trees, including Platanus occidentalis L., Ulmus davidiana (var.) japonica (Rehder) (Nakai) and Cornus officinalis (Siebold & Zucc) were heavily noted to be heavily infected with larval populations.

Practical application of the Bar-HRM technology for utilization with the differentiation of the origin of specific medicinal plant species (약용식물의 기원 판별을 위한 Bar-HRM 분석기술의 응용)

  • Kim, Yun-Hee;Shin, Yong-Wook;Lee, Shin-Woo
    • Journal of Plant Biotechnology
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    • v.45 no.1
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    • pp.9-16
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    • 2018
  • The advent of available DNA barcoding technology has been extensively adopted to assist in the reference to differentiate the origin of various medicinal plants species. However, this technology is still far behind the curve of technological advances to be applied in a practical manner in the market to authenticate the counterfeit components or detect the contamination in the admixtures of medicinal plant species. Recently, a high resolution melting curve analysis technique was combined with the procedure of DNA barcoding (Bar-HRM) to accomplish this purpose. In this review, we tried to summarize the current development and bottleneck of processing related to the Bar-HRM technology for the practical application of medicinal plant species' differentiation in a viable global market. Although several successful results have been reported, there are still many obstacles to be resolved, such as limited number of DNA barcodes and single nucleotide polymorphisms, in particular, only one DNA barcode, internal transcribed sequence (ITS) of ribosomal DNA has been reported in the available nuclear genome. In addition, too few cases have been reported about the identification of counterfeit or contamination with processed medicinal plant products, in particular specifically the case of technology based infusion, jam and jelly products and components in which it is noted that DNA can be thereby degraded during the processing of these products and components.

Toxic Trace and Earth Crustal Elements of Ambient PM2.5 Using CCT-ICP-MS in an Urban Area of Korea

  • Lee, Jin-Hong;Jeong, Jin-Hee;Lim, Joung-Myung
    • Environmental Engineering Research
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    • v.18 no.1
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    • pp.3-8
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    • 2013
  • Collision cell technology-inductively coupled plasma-mass spectrometry (CCT-ICP-MS) was used to measure the concentrations of approximately 19 elements associated with airborne PM2.5 samples that were collected from a roadside sampling station in Daejeon, Korea. Standard reference material (SRM 2783, air particulate on filter media) of the National Institute of Standards and Technology was used for the quality assurance of CCT-ICP-MS. The elemental concentrations were compared statistically with the certified (or recommended) values. The patterns of distribution were clearly distinguished between elements with their concentrations ranging over four orders of magnitude. If compared in terms of enrichment factors, it was found that toxic trace elements (e.g., Sb, Se, Cd, As, Zn, Pb, and Cu) of anthropogenic origin are much more enriched in PM2.5 samples of the study site. To the contrary, the results of the correlation analysis showed that PM2.5 concentrations can exhibit more enhanced correlations with the elements (e.g., Fe, K, Si, and Ti) arising from earth's crust. The findings of strong correlations between PM2.5 and the elements of crustal origin may be directly comparable with the dominant role of those species by constituting a major fraction of even PM2.5 as well as PM10 at the roadside area.

A survey of the genome-wide genetic variation of Hibiscus hamabo (Malvaceae)

  • Geonha HWANG;Ui-Chan JUNG;Sang-Tae KIM
    • Korean Journal of Plant Taxonomy
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    • v.53 no.2
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    • pp.148-156
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    • 2023
  • Hibiscus hamabo (Malvaceae) is a deciduous shrub mainly found in northeast Asia, including China, Japan, and Korea. Due to its limited distribution on Jejudo Island and at several sites in Jeollanam-do in Korea, H. hamabo has been designated as an endangered species by the Ministry of the Environment and has been the subject of several restoration programs. In this study, we quantified genetic variations using double-digestion restriction-associated DNA sequencing technology in 96 individuals of H. hamabo from 13 distinct populations in Korea. We determined 3,352 genome-wide single nucleotide polymorphism loci after stringent filtering processes and analyzed the level of genetic variation within and among populations as well as the population differentiation and genetic ancestry with various assumptions pertaining to the population origin. Our results indicated weak differentiations among populations surveyed in this study but clearly suggested that most of the H. hamabo populations maintain a relatively high level of genetic diversity as evidence of frequent genetic exchanges among populations via outcrossing or sequential gene flows. For a more detailed analysis of the origin of Korean H. hamabo and its demographic history, it will be necessary to expand sampling in China and Japan.