• Journal of the Korean Institute of Traditional Landscape Architecture
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• v.33 no.3
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• pp.72-83
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• 2015

A plant diversity, which consists of indigenous plant community with Orientla thuja community (Natural monument no. 1) in Dodong, Daegu, is identified and analyzed as ecological characteristic to consider worth plants and vegetation resource of the region. The vascular plants of Thuja orientalis community were listed as 219 taxa (3.7% of all 4,881 taxa of Korean vascular plants); 67 families, 147 genera, 199 species, 16 varieties, and 4 forms. Vulnerable species (VU) and least concerned species (LC) were recorded based on IUCN standard; Koelretueria paniculata (VU), Thuja orientalis (LC), and Exochorda serratifolia (LC). Although the study site is a non-limestone area, a total of 15 taxa of calciphilous plants were identified; Cheilanthes argentea, Hypodematium glandulosopilosum, Asplenium retamuraria, Thuja orientalis, Spiraea blumei, Smilax sieboldii, etc. A total of 4 taxa endemic plants were identified; Prunus mandshurica for. barbinervis, Lespedeza maximowiczii var. tomentella, Forythia koreana (artificial origin), and Veronica pyrethrina. Among the list, 8 taxa of naturalized plants were identified; Fallopia dentatoalalta, Rumex crispus, Nasturtium officinale, Bidens frondosa, Erigeron annuus etc. Naturalization rate (NR) was 3.6%, of all 219 taxa of vascular plants and urbanization index (UI) was 2.2% of all 321 taxa of naturalized plants. Thuja orientalis occupies a lot of indigenous landscape in this study area which is the southern-limited part of a natural distribution where it can survive. The T. orientalis community, where indigenous plants have formed a characterful species composition based on habitat, has been confirmed as a worth national vegetation resource in an indigeous flora. It has been considered of plans for persistent conservation.

• The Korean Journal of Mycology
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• v.45 no.1
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• pp.1-13
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• 2017

Armillaria species are non-obligate root pathogens, as well as facultative parasites. The genus consists of about 40 species with worldwide distribution that are difficult to identify morphologically. Their hosts include conifers, hardwoods, vines, and even herbs. These fungi contribute to natural thinning and succession of vegetation in forests and decompose wood to develop edible fruiting bodies from spring to autumn. Its genets have a lifespan of up to 2000 years and have been found to occupy as much as 960 ha of forest land. Recently, forest tending work such as thinning of forests has resulted in the creation of tree stumps that support the growth of Armillaria, and these mushrooms have become an income source in mountainous areas. Therefore, identification of these species is needed. We review the difficulties in identification, suggest a species identification key for Korean indigenous species, and discuss the significance of Armillaria in terms of forest ecology and plant pathology.

• International Journal of Stem Cells
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• v.17 no.1
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• pp.51-58
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• 2024

With the activity of intestinal stem cells and continuous turnover, the gut epithelium is one of the most dynamic tissues in animals. Due to its simple yet conserved tissue structure and enteric cell composition as well as advanced genetic and histologic techniques, Drosophila serves as a valuable model system for investigating the regulation of intestinal stem cells. The Drosophila gut epithelium is in constant contact with indigenous microbiota and encounters externally introduced "non-self" substances, including foodborne pathogens. Therefore, in addition to its role in digestion and nutrient absorption, another essential function of the gut epithelium is to control the expansion of microbes while maintaining its structural integrity, necessitating a tissue turnover process involving intestinal stem cell activity. As a result, the microbiome and pathogens serve as important factors in regulating intestinal tissue turnover. In this manuscript, I discuss crucial discoveries revealing the interaction between gut microbes and the host's innate immune system, closely associated with the regulation of intestinal stem cell proliferation and differentiation, ultimately contributing to epithelial homeostasis.

• Ocean and Polar Research
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• v.31 no.4
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• pp.349-357
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• 2009

Ballast water is widely recognized as a serious environmental problem due to the risk of introducing non-indigenous aquatic species. In this study we aimed to investigate measures which can minimize the transfer of aquatic organisms from ballast water. Securing more reliable technologies to determine the viability of aquatic organisms is an important initiative in ballast water management systems. To evaluate the viability of marine phytoplankton, we designed the staining methods of fluorescein diacetate (FDA) and Calcein-AM assay on each target species belonging to different groups, such as bacillariphyceae, dinophyceae, raphidophyceae, chrysophyceae, haptophyceae and chlorophyceae. The FDA method, which is based on measurements of cell esterase activity using a fluorimetric stain, was the best dye for determining live cells of almost all phytoplankton species, except several diatoms tested in this study. On the other hand, although fluorescence of Calcein-AM was very clear for a comparatively longer time, green fluorescence per cell volume was lacking in most of the tested species. According to the Flow CAM method, which is a continuous imaging technique designed to characterize particles, green fluorescence values of stained cells by FDA were significantly higher than those of Calcein-AM treatments and control, implying that the Flow CAM using FDA assay could be adapted as an important tool for distinguishing living cells from dead cells. Our results suggest that the FDA and Calcein-AM methods can be adapted for use on phytoplankton, though species-specific characters are greatly different from one organism to another.

• Proceedings of the Plant Resources Society of Korea Conference
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• 2019.10a
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• pp.37-37
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• 2019

Cryopreservation is one of the ideal and suitable methods for long-term storage of plant germplasm. The plant contaminated with diseases and pathogens are decreased the multiplication rate, survival rate and high quality of plants after cryopreservation. The aim of this work was to improve a micropropagation method for lily in Korea, which are cultivars and indigenous plant. In the last process of rinsing scales after surface-sterilization, we tried to control the diseases and pathogens lived within the tissue by rinsing in 0.03% sodium hypochlorite (NaClO) instead of sterile distilled water. Bulb scales of Lilium were cultured in vitro on MS medium supplemented with Plant Preservative Mixture (PPM). The newly small bulb formed from bulb-scales was transferred to MS medium. We checked the non-contamination and survival rate after 2 weeks in culture. Non-contamination was shown to be 70 to 90% in formed small bulbs. This study will help to mitigate microbial contamination in Lilium species micropropagation for cryopreservation.

• Ocean and Polar Research
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• v.28 no.1
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• pp.57-65
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• 2006

Various marine plankton were observed in the ballast water of vessels entering Incheon and Busan harbors. The ballast water of which age ranged from 2 to 54 days originated from the coastal waters of New Zealand, Taiwan, Singapore, Japan, Hong Kong and Pakistan, and from the Pacific Ocean. The total number of marine plankton taxa in 9 ballast tanks of different ships was 170: 90 phytoplankton, 24 protozoa and 56 zooplankton. The most diverse taxonomic groups were diatoms in phytoplankton, ciliates in protozoa and copepods in zooplankton. Classifying the specimens by size, above 50% of the number species of phytoplankton belonged to the size range between 50 and 150 Un. Protozoa and metazooplankton were found frequently in the size range between 50 and $120{\mu}m$ and 500 and $1,000{\mu}m$, respectively. The relationship between the species number and the age of ballast water was not significant. This is because of difference of filtration amounts derived from discordance of collecting samples. Among plankton observed in ballast water, some harmful algae and non-indigenous aquatic species were identified. Therefore, we need to investigate whether these species can inhabit in Korean coastal waters in further study.

• Korean Journal of Ecology and Environment
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• v.48 no.1
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• pp.38-50
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• 2015

Appearance patterns of freshwater fish were investigated in the western Demilitarized Zone (DMZ) adjacent areas near Imjin River in Gyeonggi-do, Korea, of 2014. A total of 61 species belonging to 14 families were found in the river during the survey. The dominant and subdominant species were Zacco platypus (Relative abundance, 20.3%) and Zacco koreanus (12.6%), respectively. Other abundant species include Rhinogobius brunneus (9.2%), Pungtungia herzi (4.4%), Acheilognathus yamatsutae (4.4%), and Pseudogobio esocinus (4.0%). Among the residing species, 24 species (39.3%) were endemic to Korea; and 1 species, Carassius cuvieri, was non-indigenous species. Hemibarbus mylodon is a natural monument, and Lethenteron reissneri, Acheilognathus signifer, Pseudopungtungia tenuicorpa, Gobiobotia brevibarba, G. macrocephala, and G. naktongensis are endangered species in Korea. In addition, Anguilla japonica and Plecoglossus altivelis are catadromous and amphidromous species, respectively. Among the investigated sites, the lower part of Sami Stream (St. 5, 6) and Gunnarm-dam region (St. 11, 14) are particularly valuable for the conservation of species diversity, because many fish species (33~42 species) including a natural monument and several endangered species inhabit in these regions.

• Journal of Microbiology
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• v.42 no.3
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• pp.243-247
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• 2004

Sphingomonas chlorophenolica ATCC39723 was successfully labeled with the gfp (green fluorescent protein) gene inserted into the pcpB gene by homologous recombination. As the gfp recombinant was easily distinguished from other indigenous organisms, the population of gfp recombinant was monitored after being released into the soil microcosms. Their population density dropped from 10$\^$8/ to 10$\^$6/ (cfu/$m\ell$) in the non-sterilized soil microcosms during the first 6 days. Moreover, the gfp recombinant was not detected even at lower dilution rates after a certain time period. The recombinant, however, survived for at least 28 days in the sterilized soil microcosms. Although the gfp recombinant did not degrade pentachlorophenol (PCP), this experiment showed the possibility of using gfp as a monitoring reporter system for S. chlorophenolica ATCC39723 and potentially other species of Sphingomonas.

• Journal of Microbiology and Biotechnology
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• v.15 no.5
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• pp.1087-1093
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• 2005

The population diversity and seasonal changes of bacterial communities in rice soils were monitored using both culture-dependent approaches and molecular methods. The rice field plot consisted of twelve subplots planted with two genetically-modified (GM) rice and two non-GM rice plants in three replicates. The DGGE analysis revealed that the bacterial community structures of the twelve subplot soils were quite similar to each other in a given month, indicating that there were no significant differences in the structure of the soil microbial populations between GM rice and non-GM rice during the experiment. However, the DGGE profiles of June soil after a sudden flooding were quite different from those of the other months. The June profiles exhibited a few intense DNA bands, compared with the others, indicating that flooding of rice field stimulated selective growth of some indigenous microorganisms. Phylogenetic analysis of l6S rDNA sequences from cultivated isolates showed that, while the isolates obtained from April soil before flooding were relatively evenly distributed among diverse genera such as Arthrobacter, Streptomyces, Terrabacter, and Bacillus/Paenibacillus, those from June soil after flooding mostly belonged to the Arthrobacter species. Phylogenetic analysis of 16S rDNA sequences obtained from the soil by cloning showed that April, August, and October had more diverse microorganisms than June. The results of this study indicated that flooding of rice fields gave a significant impact on the indigenous microbial community structure; however, the initial structure was gradually recovered over time after a sudden flooding.

• Korean Journal of Plant Resources
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• v.32 no.6
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• pp.730-734
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• 2019

Cryopreservation is one of the ideal and suitable methods for long-term storage of plant germplasm. The plant contaminated with diseases and pathogens are decreased the multiplication rate, survival rate and high quality of plants after cryopreservation. The aim of this work was to improve a micropropagation method for lily in Korea, which is indigenous plant. In the last process of rinsing scales after surface-sterilization, we tried to control the diseases and pathogens lived within the tissue by rinsing in 0.03% sodium hypochlorite (NaClO) instead of sterile distilled water. Bulb scales of Lilium were cultured in vitro on MS medium supplemented with Plant Preservative Mixture (PPM). The results showed that L. tsingtauense accessions were observed ranged from 53.9 to 100% with a mean value of 76.8% and L. hansonii accessions were checked from 84.5 to 85.5% with a mean of 85% survival rate. The newly small bulb formed from bulb-scales was transferred to MS medium. We checked the presence of microorganisms and survival rate after 3 weeks in culture after examination of bacterial incidences. The results indicated that the non-contamination rate were shown ranged from 75.0 to 94.1% with mean value of 83.2% in L. tsingtauense species, and that L. hansonii were observed 85.1 to 91.7% with mean value of 88.4%. This study will provide a valuable basis for establishment of effective axenic cultures for in vitro micropropagation of Korean native lily species.