• Title/Summary/Keyword: mushroom collection and identification

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Evaluating Genetic Diversity of Agaricus bisporus Accessions through Phylogenetic Analysis Using Single-Nucleotide Polymorphism (SNP) Markers

  • Oh, Youn-Lee;Choi, In-Geol;Kong, Won-Sik;Jang, Kab-Yeul;Oh, Min ji;Im, Ji-Hoon
    • Mycobiology
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    • v.49 no.1
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    • pp.61-68
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    • 2021
  • Agaricus bisporus, commonly known as the button mushroom, is widely cultivated throughout the world. To breed new strains with more desirable traits and improved adaptability, diverse germplasm, including wild accessions, is a valuable genetic resource. To better understand the genetic diversity available in A. bisporus and identify previously unknown diversity within accessions, a phylogenetic analysis of 360 Agaricus spp. accessions using single-nucleotide polymorphism genotyping was performed. Genetic relationships were compared using principal coordinate analysis (PCoA) among accessions with known origins and accessions with limited collection data. The accessions clustered into four groups based on the PCoA with regard to genetic relationships. A subset of 67 strains, which comprised a core collection where repetitive and uninformative accessions were not included, clustered into 7 groups following analysis. Two of the 170 accessions with limited collection data were identified as wild germplasm. The core collection allowed for the accurate analysis of A. bisporus genetic relationships, and accessions with an unknown pedigree were effectively grouped, allowing for origin identification, by PCoA analysis in this study.

A Checklist of Mushrooms of Dong Hua Sao National Biodiversity Conservation Area (DHSNBCA) of Lao-PDR

  • Lee, JongKyu;Kim, DaeHo;Nguyen, Manh Ha;Bae, Young Jun;Manilak, Philaxay
    • Journal of Forest and Environmental Science
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    • v.37 no.2
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    • pp.163-167
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    • 2021
  • Mushroom survey and collection were conducted in the Dong Hua Sao National Biodiversity Conservation Area (DHSNBCA), which is located about 30 km east of Pakse and about 10 km south of the town of Paksong, Champasak Province of Lao-PDR, from from at the early July to October in 2019. During this periods, mushroom specimens were collected from 6 different locations, and then they were identified and classified into 103 species, 74 genera, 37 families, 15 orders and 6 classes by morphological and molecular analyses. The mushrooms belongs to Ascomycota were classified into 10 species, 6 genera, 4 families, 3 orders and 2 classes, while those belongs to Basidiomycota were classified into 92 species, 67 genera, 32 families, 11 orders, and 3 classes, respectively. In addition, 1 species of Myxomycota was also identified. Among these mushrooms, the most species-rich families are Marasmiaceae (17.3%), Polyporaceae (13.1%), Mycenaceae (8.9%), Agricaceae (8.3%), Xylariaceae (6.5%), Auriculariaceae (4.8%), Ganodermtaceae (3.6%), Dacrymycetaceae (3.0%), Meruliaceae (3.0%), Russulaceae (3.0%) and comprised 71.4% of the total specimens identified.

A Checklist of Mushrooms of Phousabous National Protected Area (PNPA) of Lao PDR

  • Hong, Min Young;Park, Soo Wan;Kim, Dae Ho;Saysavanh, Veosavanh;Lee, Jong Kyu
    • Journal of Forest and Environmental Science
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    • v.35 no.4
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    • pp.268-271
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    • 2019
  • Mushroom survey and collection were conducted in the Phousabous National Protected Area (PNPA), which is located at the Northeastern area 230km from the capital city of Lao-PDR, Vientiane, from April 2017 to September 2018. During this periods, mushroom specimens were collected from 8 different locations, and then they were identified and classified into 284 species, 142 genera, 56 families, 20 orders and 7 classes by morphological and molecular analyses. The mushrooms belongs to Ascomycota were classified into 10 species, 5 genera, 5 families, 4 orders and 3 classes, while those belongs to Basidiomycota were classified into 274 species, 137 genera, 51 families, 16 orders, and 4 classes, respectively. Among these mushrooms, the most species-rich families are Boletaceae (16.06%), Polyporaceae (10.12%), Russulaceae (9.94%), Amanitaceae (7.68%), Agaricaceae (4.54%), Marasmiaceae (4.36%), Cortinariaceae (3.66%), Entolomataceae (3.66%), Mycenaceae (2.79%), Xylariaceae (2.44%), Physalacriaceae (2.09%), Omphalotaceae (2.09%), Hydnangitaceae (2.09%), Lyophyllaceae (1.92%), Tricholomataceae (1.75%) and comprised 75.19% of the total specimens identified.

Poisonous Substances from Mushrooms (버섯의 유독물질 (有毒物質))

  • Cho, Jae-Hyun;Lee, Tae-Seong;Kim, Bo-Min;Hwang, Byang-Ho
    • Journal of Forest and Environmental Science
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    • v.26 no.1
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    • pp.37-51
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    • 2010
  • A mushroom as a functional food material is being increasingly used in these days. It has been that about 1,500 species of mushrooms grow naturally in Asia. Among them about 700 species are edible, but about 30-50 species are poisonous. Even a poisonous mushroom is a very interesting subject for the dietary life research from biochemical viewpoint due to the fact that any mushroom can be the physiological active material. Not a few identified poisonous materials are being used as research reagents thus far. It is suggested that more useful materials could be obtained by progresses in future researches. The identification of the poisonous ingredient can open up a route for mushroom intoxication cure. It is known that cell destruction and troubles on skin, liver, and kidney troubles can be occurred from mushroom intoxication. Recently the author reported as a collection of treatises regarding anti-tumor substances of mushroom (2005), antibiotic substances of mushroom (2006), living-body functional and control substance (2007), and medicinal mushroom commonly used in Korean herbal medicines (2008). In this sequel, published research data on protoplasm, nerve, stomach and intestines, malodor, and acute pain poison of mushroom are collected and reported.

A Checklist of Mushrooms of Phou Khao Khuoay National Protected Area (PKKNPA) of Lao-PDR

  • Lee, Jin Heung;Kim, Dae Ho;Yun, Ji Ho;Hong, Min Young;Lee, Jong Kyu
    • Journal of Forest and Environmental Science
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    • v.34 no.6
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    • pp.457-460
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    • 2018
  • Mushroom survey was conducted in the Phou Khao Khuoay National Protected Area (PKKNPA) located at east direction 65km from Vientiane, the capital city of Lao-PDR from September 2015 to November 2016. During this periods, mushroom specimens were collected from 10 different survey sites, and then were identified and classified into 149 species, 113 genera, and 55 families by morphological and molecular analyses. The mushrooms belongs to Ascomycota were classified into 13 species, 7 genera, 5 families, and 5 orders, while those belongs to Basidiomycota were classified into 136 species, 113 genera, 55 families, and 18 orders, respectively. Among these mushrooms, the most species-rich families were Polyporaceae (18.1%), Marasmiaceae (11.0%), Ganodermataceae (8.6%), Xylariaceae (5.8%), Russulaceae (5.4%), Agaricaceae (4.7%), Boletaceae (4.7%), Hymenochaetaceae (3.9%), and Amanitaceae (3.6%), and comprised 65.8% of the total specimens identified.

A Checklist of Mushrooms of Cambodia

  • Kim, Nam Kyu;Lee, Jin Heung;Jo, Jong Won;Lee, Jong Kyu
    • Journal of Forest and Environmental Science
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    • v.33 no.1
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    • pp.49-65
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    • 2017
  • Overall, 3,950 mushroom specimens were collected from the Central Cardamom Protected Forest (CCPF) in Koh Kong province, the Kirirom National Park (KNP) in Kampong Speu province, the Seima Biodiversity Conservation Area (SBCA) in Kratie province, the Mondulkiri Protected Forest (MPF) in Mondulkiri province, the Phnom Bokor National Park (PBNP) in Kampot province, the Western Siem Pang Protected Forest (SPPF) in Stung Treng province, the Ream National Park (RNP) in Sihanoukville province of Cambodia from 2009 to 2014, and then they were identified and classified into 302 species, 165 genera, and 64 families by morphological and genetical characteristics. The mushrooms belongs to Ascomycota were classified into 26 species, 14 genera, and 10 families, while those belongs to Basidiomycota were classified into 276 species, 151 genera, and 54 families, respectively. Among these mushrooms, the most species-rich families are Polyporaceae (26.2%), Marasmiaceae (9.1%), Ganodermataceae (7.7%), Hymenochaetaceae (7.5%), and Mycenaceae (7.1%), and comprised 57.5% of the total specimens identified.

Checklist of Mushrooms of Mt. Cleopatra Needle Forest Reserve in Palawan Island, Philippines

  • Kim, Dae Ho;Ha, Nguyen Manh;Manalo, Mutya Ma Quintos;Baldovino, Manuel;Lee, Jong Kyu
    • Journal of Korean Society of Forest Science
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    • v.110 no.2
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    • pp.289-294
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    • 2021
  • A mushroom survey was conducted in Mt. Cleopatra Needle Forest Reserve (CNFR) northeast of Puerto Pincesa, the capital city of Palawan island, from August 2018 to September 2019. During this period, 433 fungal fruiting bodies were collected from 3 different from survey sites, Concepcion, Kalakwasan, and Tanabag Barangays. The specimens were identified based on their morphological and molecular analyses and classified into 176 species, 114 genera, 55 families, and 22 orders. The mushrooms belong to Ascomycota were classified into 20 species, 15 genera, 12 families, and 7 orders, while those belongs to Basidiomycota were classified into 156 species, 99 genera, 43 families, and 15 orders, respectively. Among these mushrooms, the families with high frequency were Polyporaceae (18.9%), Marasmiaceae (11.5%), Xylariaceae (9.7%), Agaricaceae (8.3%), Auriculariaceae (4.8%), Ganodermataceae (4.2%), Hypoxylaceae (3.2%), and Sarcoscyphaceae (3.0%), and comprised 63.7% of the total specimens identified. This report may be the first checklist of mushrooms in Mt. CNFR and could be used for developing conservation strategies of the critical habitat in Palawan island.

Present status and prospect for development of mushrooms in Korea

  • Jang, Kab-Yeul;Oh, Youn-Lee;Oh, Minji;Im, Ji-Hoon;Lee, Seul-Ki;Kong, Won-Sik
    • 한국균학회소식:학술대회논문집
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    • 2018.05a
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    • pp.27-27
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    • 2018
  • The production scale of mushroom cultivation in Korea is approximately 600 billion won, which is 1.6% of the Korean gross agricultural output. Annually, ca. 190,000 tons of mushrooms are harvested in Korea. Although the numbers of mushroom farms and cultivators are constantly decreasing, the total mushroom yields are increasing due to the large-scale cultivation facilities and automation. The recent expansion of the well-being trend causes increase in mushroom consumption in Korea: annual per capita consumption of mushroom was 3.9kg ('13) that is a little higher than European's average. Thus the exports of mushrooms, mainly Flammulina velutipes and Pleurotus ostreatus, have been increased since the middle of 2000s. Recently, however, it is slightly reduced. However, Vietnam, Hong Kong, the United States, the Netherlands and continued to export, and the country has increased recently been exported to Australia, Canada, Southeast Asia and so on. Canned foods of Agaricus bisporus was the first exports of the Korean mushroom industry. This business has reached the peak of the sale in 1977-1978. As Korea initiated trade with China in 1980, the international prices of mushrooms were sharply fall that led to shrink the domestic markets. According to the high demand to develop new items to substitute for A. bisporus, oyster mushroom (Pleurotus ostreatus) was received the attention since it seems to suit the taste of Korean consumers. Although log cultivation technique was developed in the early 1970s for oyster mushroom, this method requires a great deal of labor. Thus we developed shelf cultivation technique which is easier to manage and allows the mass production. In this technique, the growing shelf is manly made from fermented rice straw, that is the unique P. ostreatus medium in the world, was used only in South Korea. After then, the use of cotton wastes as an additional material of medium, the productivity. Currently it is developing a standard cultivation techniques and environmental control system that can stably produce mushrooms throughout the year. The increase of oyster mushroom production may activate the domestic market and contribute to the industrial development. In addition, oyster mushroom production technology has a role in forming the basis of the development of bottle cultivation. Developed mushroom cultivation technology using bottles made possible the mass production. In particular, bottle cultivation method using a liquid spawn can be an opportunity to export the F.velutipes and P.eryngii. In addition, the white varieties of F.velutipes were second developed in the world after Japan. We also developed the new A.bisporus cultivar "Sae-ah" that is easy to grown in Korea. To lead the mushroom industry, we will continue to develop the cultivars with an international competitive power and to improve the cultivation techniques. Mushroom research in Korea nowadays focuses on analysis of mushroom genetics in combination with development of new mushroom varieties, mushroom physiology and cultivation. Further studied are environmental factors for cultivation, disease control, development and utilization of mushroom substrate resources, post-harvest management and improvement of marketable traits. Finally, the RDA manages the collection, classification, identification and preservation of mushroom resources. To keep up with the increasing application of biotechnology in agricultural research the genome project of various mushrooms and the draft of the genetic map has just been completed. A broad range of future studies based on this project is anticipated. The mushroom industry in Korea continually grows and its productivity rapidly increases through the development of new mushrooms cultivars and automated plastic bottle cultivation. Consumption of medicinal mushrooms like Ganoderma lucidum and Phellinus linteus is also increasing strongly. Recently, business of edible and medicinal mushrooms was suffering under over-production and problems in distribution. Fortunately, expansion of the mushroom export helped ease the negative effects for the mushroom industry.

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New Species of Termitomyces (Lyophyllaceae, Basidiomycota) from Sabah (Northern Borneo), Malaysia

  • Seelan, Jaya Seelan Sathiya;Yee, Chong Shu;Fui, Foo She;Dawood, Mahadimenakbar;Tan, Yee Shin;Kim, Min-Ji;Park, Myung Soo;Lim, Young Woon
    • Mycobiology
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    • v.48 no.2
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    • pp.95-103
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    • 2020
  • The genus Termitomyces (Lyophyllaceae, Basidiomycota) is often associated with fungus-feeding termites (Macrotermitinae) due to their strong symbiotic relationships. The genus is widely found exclusively in certain regions of Africa and Asia. They are recognized as edible mushroom within Southeast Asia as well. But it is often misidentified based on morphology by the local communities especially in Malaysia for Chlorophyllum molybdites which is a highly poisonous mushroom. Thus, it is necessary to study the genus for Malaysia with the synergy of using both morphological and molecular identification. In this study, we aim to describe another new species as an addition to the genus Termitomyces found within Sabah, Malaysia. We generated two new sequences (nrLSU and mtSSU) for the new species and a total of 28 nrLSU and mtSSU sequences were retrieved from GenBank for the phylogenetic analysis using maximum likelihood and Bayesian inferences. We identified that the new collection from Sabah province is a new species and named as Termitomyces gilvus based on the termites found in the mound. A phylogeny tree made from the concatenated genes of LSU and mtSSU suggests that T. gilvus is closely related to T. bulborhizus from China. According to our results, the combination of molecular and morphology proved to be a robust approach to re-evaluate the taxonomic status of Termitomyces species in Malaysia. Additional surveys are needed to verify the species diversity and clarify their geographic distribution.

Molecular and Morphological Characterization of Green Mold, Trichoderma spp. isolated from Oyster Mushrooms

  • Choi, In-Young;Hong, Seung-Beom;Yadav, Mahesh C.
    • Mycobiology
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    • v.31 no.2
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    • pp.74-80
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    • 2003
  • Isolates of Trichoderma spp. collected from Pleurotus ostreatus and P. eryngii beds, which included loosened substrate compactness and development of green colour, were grouped into three species. The occurrence of different species of Trichoderma was as T. cf. virens(70.8%), T. longibrachiatum(16.7%) and T. harzianum(12.5%). The conidia of Trichoderma spp. were ellipsoidal, obovoid and phialides were bowling pins, lageniform and the length of phialides was $3.5{\sim}10.0{\times}1.3{\sim}3.3{\mu}m$. Phialides of T. cf. virens and T. harzianum were tending clustered, but it was solitary disposition in T. longibrachiatum. T. cf. virens was characterized by predominantly effuse conidiation, sparingly branched, and fertile to the apex and it was penicillate type. RAPD analysis could detect variability amongst three different species of Trichoderma using two newly designed URP-primers. However, intra-specific variation could not be detected in all the isolates except for rDNA sequence data classified Trichoderma isolates into three distinct groups representing three species. The profiles of rDNA sequences of isolates representing a species showed high similarity in T. cf. virens and T. harzianum. However, there was a variation in rDNA sequences of isolates representing T. longibrachiatum. The results of present study reveals that molecular techniques of RAPD and rDNA sequencing can greatly aid in classification based on morphology and precise identification of fast evolving species of Trichoderma.