• The Sea:JOURNAL OF THE KOREAN SOCIETY OF OCEANOGRAPHY
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• v.12 no.3
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• pp.178-185
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• 2007

Myrionecta rubra Jankowski 1976(=Mesodinium rubrum Lohmann 1908), a mixotrophic ciliate, is very common and often causes recurrent red tides in diverse marine environments. Since the report on the first laboratory strain of this species in 2000, papers on its novel ecological role and evolutionary importance have been high lighted. This review paper is prepared to promote the de novo recognition M. rubra as a marine mixotrophic species. M. rubra is a ciliate which is able to photosynthesize using plastids originated from cryptophyte (including Teleaulax sp. and Geminigera sp.) prey cells (i.e. kleptoplastidic ciliate). Recently, novel bacterivory of M. rubra was firstly reported. Thus, the nutritional modes of M. rubra include photosynthesis, bacterivory, and algivory. In turn, M. rubra was reported as the prey species of metazoan predators such as calanoid copepods, mysids, larvae of ctenophore and anchovy, and spats of bivalves. In addition, it was reported that dinoflagellate Dinophysis causing diarrhetic shellfish poisoning is one among the predators of M. rubra. Thus, M. rubra, a marine mixotrophic ciliate, may play a pivotal role as a common linking ciliate for the flow of energy and organic material in pelagic food webs.

• 한국균학회소식:학술대회논문집
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• 2014.10a
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• pp.11-11
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• 2014

Fungal pathogens have huge impact on health and economic wellbeing of human by causing life-threatening mycoses in immune-compromised patients or by destroying crop plants. A key determinant of fungal pathogenesis is their ability to undergo developmental change in response to host or environmental factors. Genetic pathways that regulate such morphological transitions and adaptation are therefore extensively studied during the last few decades. Given that epigenetic as well as genetic components play pivotal roles in development of plants and mammals, contribution of microbial epigenetic counterparts to this morphogenetic process is intriguing yet nearly unappreciated question to date. To bridge this gap in our knowledge, we set out to investigate histone modifications among epigenetic mechanisms that possibly regulate fungal adaptation and processes involved in pathogenesis of a model plant pathogenic fungus, Magnaporthe oryzae. M. oryzae is a causal agent of rice blast disease, which destroys 10 to 30% of the rice crop annually. Since the rice is the staple food for more than half of human population, the disease is a major threat to global food security. In addition to the socioeconomic impact of the disease it causes, the fungus is genetically tractable and can undergo well-defined morphological transitions including asexual spore production and appressorium (a specialized infection structure) formation in vitro, making it a model to study fungal development and pathogenicity. For functional and comparative analysis of histone modifications, a web-based database (dbHiMo) was constructed to archive and analyze histone modifying enzymes from eukaryotic species whose genome sequences are available. Histone modifying enzymes were identified applying a search pipeline built upon profile hidden Markov model (HMM) to proteomes. The database incorporates 22,169 histone-modifying enzymes identified from 342 species including 214 fungal, 33 plants, and 77 metazoan species. The dbHiMo provides users with web-based personalized data browsing and analysis tools, supporting comparative and evolutionary genomics. Based on the database entries, functional analysis of genes encoding histone acetyltransferases and histone demethylases is under way. Here I provide examples of such analyses that show how histone acetylation and methylation is implicated in regulating important aspects of fungal pathogenesis. Current analysis of histone modifying enzymes will be followed by ChIP-Seq and RNA-seq experiments to pinpoint the genes that are controlled by particular histone modifications. We anticipate that our work will provide not only the significant advances in our understanding of epigenetic mechanisms operating in microbial eukaryotes but also basis to expand our perspective on regulation of development in fungal pathogens.

• Ocean and Polar Research
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• v.29 no.4
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• pp.401-410
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• 2007

In Korea the study of marine heterotrophic protists started in the late 1980s, and since the early 1990s many studies have been conducted in various marine environments. In this article, studies on the distribution and abundance of protists and the biotic interactions(bacteria-protists, phytoplankton-protists) conducted in Korean coastal waters are reviewed, and a field study is reported and discussed. The field study in Masan Bay was carried out from February 2004 to November 2005 at seven selected stations representative of the bay. During the study, the mean abundance of heterotrophic bacteria and the mean concentration of chlorophyll-a were $2.1{\times}10^6\;cells\;mL^{-1}$ and $9.8{\mu}g\;L^{-1}$, respectively. Heterotrophic protists consisted of heterotrophic dinoflagellates, heterotrophic nanoflagellates(excluding dinoflagellates) and ciliates, and their abundances were means of $7.9{\times}10^4\;cells\;L^{-1}$, $1.2[\times}10^3\;cells\;mL^{-1}$, and $4.0{\times}10^4\;cells\;L^{-1}$, respectively. Generally, the chlorophyll-a concentra+CZ14tions and the abundances of heterotrophic bacteria and protists were higher in the inner zone of the bay, where there are high concentrations of organic matters, than in the middle and outer zones. Using the grazing rates of heterotrophic nanoflagellates on bacteria previously reported in this area, it can be calculated that about 69% of bacterial producton was removed by HNF grazing activity. About 24% of initial chlorophyll-a concentration was removed by microzooplankton grazing activity. In conclusion, this study suggests that in Masan Bay heterotrophic protists control the growth of bacteria and phytoplankton, and heterotrophic protists represent an important link of bacterial & microalgal biomass to higher trophic levels.