• Proceedings of the Korean Society for Bioinformatics Conference
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• 2003.10a
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• pp.26-51
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• 2003

Large scale protein interaction maps provide a new, global perspective with which to analyse protein function. PSIMAP, the Protein Structural Interactome Map, is a database of all the structurally observed interactions between superfamilies of protein domains with known three-dimensional structure in thePDB. PSIMAP incorporates both functional and evolutionary information into a single network. It makes it possible to age protein domains in terms of taxonomic diversity, interaction and function. One consequence of it is to predict the most important protein domain structure in evolution. We present a global analysis of PSIMAP using several distinct network measures relating to centrality, interactivity, fault-tolerance, and taxonomic diversity. We found the following results: ${\bullet}$ Centrality: we show that the center and barycenter of PSIMAP do not coincide, and that the superfamilies forming the barycenter relate to very general functions, while those constituting the center relate to enzymatic activity. ${\bullet}$ Interactivity: we identify the P-loop and immunoglobulin superfamilies as the most highly interactive. We successfully use connectivity and cluster index, which characterise the connectivity of a superfamily's neighbourhood, to discover superfamilies of complex I and II. This is particularly significant as the structure of complex I is not yet solved. ${\bullet}$ Taxonomic diversity: we found that highly interactive superfamilies are in general taxonomically very diverse and are thus amongst the oldest. This led to the prediction of the oldest and most important protein domain in evolution of lift. ${\bullet}$ Fault-tolerance: we found that the network is very robust as for the majority of superfamilies removal from the network will not break up the network. Overall, we can single out the P-loop containing nucleotide triphosphate hydrolases superfamily as it is the most highly connected and has the highest taxonomic diversity. In addition, this superfamily has the highest interaction rank, is the barycenter of the network (it has the shortest average path to every other superfamily in the network), and is an articulation vertex, whose removal will disconnect the network. More generally, we conclude that the graph-theoretic and taxonomic analysis of PSIMAP is an important step towards the understanding of protein function and could be an important tool for tracing the evolution of life at the molecular level.

• Korean Journal of Medicinal Crop Science
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• v.8 no.1
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• pp.9-13
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• 2000

To determine the proper carbon and nitrogen sources and their proper levels for mass micro propagation of Scrophularia buergeriana Miquel, tonic and curing cough experiment were applied and a method for mass cultivation by using bioreactors (2.5 L) was expinined. Proper ratio of $NH_4NO_3\;:\;$KNO_3$ was 413 mg/L : 1900 mg/L for multiple shoot production. Sucrose was more effective than glucose or fractose as carbon source and 3% concentration was good for shoot formation. Total nitrogen was not detected after six weeks both in 500 ml flask and bioreactor culture. Sucrose was decreased sharply after two weeks and there was no sucrose left after three weeks both in 500 ml flask and bioreactor culture. The stirrer in bioreactor caused shear stress to shoots severely. The sphere type bioreactor was better than the cylinder type and removal of inner loop in sphere type was more effective to avoid shear stress.

• Molecules and Cells
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• v.23 no.2
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• pp.228-238
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• 2007

Since molecular structure of hnRNP is not available in foreseeable future, it is best to construct a working model for hnRNP structure. A geometric problem, assembly of $700{\pm}20$ nucleotides with 48 proteins, is visualized by a frame work in which all the proteins participate in primary binding, followed by secondary, tertiary and quaternary binding with neighboring proteins without additional import. Thus, 40S hnRNP contains crown-like secondary structure (48 stemloops) and appearance of 6 petal (octamers) rose-like architectures. The proteins are wrapped by RNA. Co-transcriptional folding for RNP fibril of FMR1 gene can produce 2,571 stem-loops with frequency of 1 stem-loop/15.3 nucleotides and 53 40S hnRNP beaded structure. By spliceosome driven reactions, there occurs removal of 16 separate lariated RNPs, joining 17 separate beaded exonic structures and anchoring EJC on each exon junction. Skipping exon 12 has 5'GU, 3'AG and very compact folding pattern with frequency of 1 stem-loop per 12 nucleotides in short exon length (63 nucleotides). 5' end of exon 12 contains SS (Splicing Silencer) element of UAGGU. In exons 10, 15 and 17 where both regular and alternative splice sites exist, SS (hnRNP A1 binding site) is observed at the regular splicing site. End products are mature FMR-1 mRNP, 4 species of Pri-microRNAs derived from introns 7,9,15 and 3'UTR of exon17, respectively. There may also be some other regulatory RNAs containing ALU/Line elements as well.

• The Journal of Advanced Prosthodontics
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• v.10 no.1
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• pp.1-7
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• 2018

PURPOSE. The aim of this study was to evaluate the effects of abutment diameter, cement type, and re-cementation on the retention of implant-supported CAD/CAM metal copings over short abutments. MATERIALS AND METHODS. Sixty abutments with two different diameters, the height of which was reduced to 3 mm, were vertically mounted in acrylic resin blocks with matching implant analogues. The specimens were divided into 2 diameter groups: 4.5 mm and 5.5 mm (n=30). For each abutment a CAD/CAM metal coping was manufactured, with an occlusal loop. Each group was sub-divided into 3 sub-groups (n=10). In each subgroup, a different cement type was used: resin-modified glass-ionomer, resin cement and zinc-oxide-eugenol. After incubation and thermocycling, the removal force was measured using a universal testing machine at a cross-head speed of 0.5 mm/min. In zinc-oxide-eugenol group, after removal of the coping, the cement remnants were completely cleaned and the copings were re-cemented with resin cement and re-tested. Two-way ANOVA, post hoc Tukey tests, and paired t-test were used to analyze data (${\alpha}=.05$). RESULTS. The highest pulling force was registered in the resin cement group (414.8 N), followed by the re-cementation group (380.5 N). Increasing the diameter improved the retention significantly (P=.006). The difference in retention between the cemented and recemented copings was not statistically significant (P=.40). CONCLUSION. Resin cement provided retention almost twice as strong as that of the RMGI. Increasing the abutment diameter improved retention significantly. Re-cementation with resin cement did not exhibit any difference from the initial cementation with resin cement.

• Proceedings of the Korean Vacuum Society Conference
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• 2015.08a
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• pp.104-104
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• 2015

Due to the demand of the cold neutron flux in the neutron science and beam utilization technology, the cold neutron source (CNS) has been constructed and operating in the nuclear research reactor all over the world. The majority of the heat load removal scheme in the CNS is two-phase thermosiphon using the liquid hydrogen as a moderator. The CNS moderates thermal neutrons through a cryogenic moderator, liquid hydrogen, into cold neutrons with the generation of the nuclear heat load. The liquid hydrogen in a moderator cell is evaporated for the removal of the generated heat load from the neutron moderation and flows upward into a heat exchanger, where the hydrogen gas is liquefied by the cryogenic helium gas supplied from a helium refrigeration system. The liquefied hydrogen flows down to the moderator cell. To keep the required liquid hydrogen stable in the moderator cell, the CNS consists of an in-pool assembly (IPA) connected with the hydrogen system to handle the required hydrogen gas, the vacuum system to create the thermal insulation, and the helium refrigeration system to provide the cooling capacity. If one of systems is running out of order, the operating research reactor shall be tripped because the integrity of the CNS-IPA is not secured under the full power operation of the reactor. To prevent unscheduled reactor shutdown during a long time because the research reactor has been operating with the multi-purposes, the introduction of the standby cooling system (STS) can be a solution. In this presentation, the design considerations are considered how to design the STS satisfied with the following objectives: (a) to keep the moderator cell less than 350 K during the full power operation of the reactor under loss of the vacuum, loss of the cooling power, loss of common electrical power, or loss of instrument air cases; (b) to circulate smoothly helium gas in the STS circulation loop; (c) to re-start-up the reactor within 1 hour after its trip to avoid the Xenon build-up because more than certain concentration of Xenon makes that the reactor cannot start-up again; (d) to minimize the possibility of the hydrogen-oxygen reaction in the hydrogen boundary.

• Nuclear Engineering and Technology
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• v.41 no.1
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• pp.53-62
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• 2009

A set of experiments has been conducted on the performance sensitivity of the passive residual heat removal system (PRHRS) for an advanced integral type reactor, SMART, by using a high temperature and high pressure thermal-hydraulic test facility, the VISTA facility. In this paper the effects of the opening delay of the PRHRS bypass valves and the closing delay of the secondary system isolation valves, and the initial water level and the initial pressure of the compensating tank (CT) are investigated. During the reference test a stable flow occurs in a natural circulation loop that is composed of a steam generator secondary side, a secondary system, and a PRHRS; this is ascertained by a repetition test. When the PRHRS bypass valves are operated 10 seconds later than the secondary system isolation valves, the primary system is not properly cooled. When the secondary system isolation valves are operated 10 or 30 seconds later than the PRHRS bypass valves, the primary system is effectively cooled but the inventory of the PRHRS CT is drained earlier. As the initial water level of the CT is lowered to 16% of the full water level, the water is quickly drained and then nitrogen gas is introduced into the PRHRS, resulting in the deterioration of the PRHRS performance. When the initial pressure of the PRHRS is at 0.1MPa, the natural circulation is not performed properly. When the initial pressures of the PRHRS are 2.5 or 3.5 MPa, they show better performance than did the reference test.

• Journal of Chest Surgery
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• v.25 no.11
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• pp.1254-1260
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• 1992

Rupture of the posterior left ventricular wall following mitral valve replacement is a rare but fatal complication. Over a 10 year period from August 25 1980 to November 27 1990, we have experienced 6 such patients among 884 cases of mitral valve replacement with 4 deaths and 2 survivors. One patient had a type I rupture and another a type II rapture with the remaining four patients having suffered type III ruptures. All of the ruptures were dis covered intraoperatively enabling prompt reinstitution of the cardiopulmonary bypass and subsequent cardioplegic arrest prior to repair. Overzealous removal of calcified valve leaflets seemed to be responsible for the single type I rupture, and untethering of the so called ventricular loop appeared to be the main mechanism responsible for the type III ruptures. The single type II rupture that had occurred seemed to have been caused by inadvertent laceration of the papillary muscle with resultant rupture of the posterior LV wall at the base of the papillary muscle. Among the type III ruptures, 2 patients required intraaortic balloon pump[IABP] support only for mechanical assistance and 1 patient required both the IABP and the Biomedicus LV assist device for successfull weaning following repair of the LV rupture Another patient with a type II rupture also required the circulatory assistance of both the IABP and the bio-medicus LV assist device for weaning from the bypass. Attention to meticulous technical considerations such as avoiding over aggressive removal of heavily calcified valvular tissue, preservation of as much mural leaflet tissue and chordal stuctures as possible seemed helpful in preventing this catastrophic complication from occurring. Fusion and fibrous stricture of the chordal structures appeared particularly conducive to the type II ruptures as a result of the increased susceptibility to papillary injury during operation.

• Transactions of the Korean Society of Mechanical Engineers A
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• v.37 no.10
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• pp.1251-1259
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• 2013

In this study, high temperature design and creep-fatigue damage evaluation of a decay heat exchanger (DHX) in the decay heat removal systems of a sodium-cooled fast reactor (SFR) have been performed. Detail design and 3D finite element analysis have been conducted for the DHXs to be installed in active and passive decay heat removal systems in Korean Generation IV SFR, and the DHX installed in the STELLA-1(Sodium integral effect test loop for safety simulation and assessment) at KAERI (Korea Atomic Energy Research Institute). Evaluations of creep-fatigue damage based on full 3D finite element analyses were conducted for the two Mod.9Cr-1Mo steel heat exchangers according to the elevated temperature design codes of ASME Section III Subsection NH and RCC-MR code. Code comparisons were made based on the creep-fatigue damage evaluation and issues on conservatisms of the design codes were discussed.

• Applied Chemistry for Engineering
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• v.23 no.6
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• pp.608-613
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• 2012

Dielectric barrier discharge plasma reactor was applied to the removal of ethylene from a simulated storage facility ($1.0m^3$) of fruits and vegetables. The system operated in a closed-loop mode by feeding the contaminated gas to the plasma reactor and recirculating the treated gas back to the storage facility. The experiments were carried out with parameters such as discharge power, circulation flow rate, initial ethylene concentration and treatment time. The rate of ethylene decomposition was mainly controlled by the discharge power and the treatment time. With the other conditions kept constant, the ethylene decomposition rate in the presence of the manganese oxide ozone control catalyst installed downstream from the plasma reactor was lower than that in the absence of it. The suggests that unreacted ozone from the plasma reactor accumulated in the storage facility where it additionally decomposed ethylene. On the basis of an initial ethylene concentration of 50 ppm, the energy requirement for completing the decomposition was about 60 kJ.

• Molecules and Cells
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• v.27 no.6
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• pp.657-665
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• 2009

The ovomucoid pre-mRNA has been folded into mini-hairpins adaptable for the RNA recognition motif (RRM) protein binding. The number of mini-hairpins were 372 for pre-mRNA and 83-86 for mature mRNA. The spatial arrangements are, in average, 16 nucleotides per mini-hairpin which includes 7 nt in the stem, 5.6 nt in the loop and 3.7 nt in the inter-hairpin spacer. The constitutive splicing system of ovomucoid-pre-mRNA is characterized by preferred order of intron removal of 5/6 > 7/4 > 2/1 > 3. The 5' splice sites (5'SS), branch point sequences (BPS) and 3' splice sites (3'SS) were identified and free energies involved have been estimated in 7 splice sites. Thermodynamic barriers for splice sites from the least (|lowest| -Kcal) were 5, 4, 7, 6, 2, 1, and 3; i.e., -18.7 Kcal, -20.2 Kcal, -21.0 Kcal, -24.0 Kcal, - 25.4 Kcal, -26.4 Kcal and -28.2 Kcal respectively. These are parallel to the kinetic data of splicing order reported in the literature. As a result, the preferred order of intron removals can be described by a consideration of free energy changes involved in the spliceosomal assembly pathway. This finding is consistent with the validity of hnRNP formation mechanisms in previous reports.