• Title/Summary/Keyword: lC clusters

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Effect of Phytogenic Feed Additives in Soybean Meal on In vitro Swine Fermentation for Odor Reduction and Bacterial Community Comparison

  • Alam, M.J.;Mamuad, L.L.;Kim, S.H.;Jeong, C.D.;Sung, H.G.;Cho, S.B.;Jeon, C.O.;Lee, K.;Lee, Sang Suk
    • Asian-Australasian Journal of Animal Sciences
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    • v.26 no.2
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    • pp.266-274
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    • 2013
  • The effect of different phytogenic feed additives on reducing odorous compounds in swine was investigated using in vitro fermentation and analyzed their microbial communities. Soybean meal (1%) added with 0.1% different phytogenic feed additives (FA) were in vitro fermented using swine fecal slurries and anaerobically incubated for 12 and 24 h. The phytogenic FAs used were red ginseng barn powder (Panax ginseng C. A. Meyer, FA1), persimmon leaf powder (Diospyros virginiana L., FA2), ginkgo leaf powder (Ginkgo biloba L., FA3), and oregano lippia seed oil extract (Lippia graveolens Kunth, OL, FA4). Total gas production, pH, ammonianitrogen ($NH_3$-N), hydrogen sulfide ($H_2S$), nitrite-nitrogen ($NO_2{^-}$-N), nitrate-nitrogen ($NO_3{^-}$-N), sulfate (${SO_4}^{--}$), volatile fatty acids (VFA) and other metabolites concentration were determined. Microbial communities were also analyzed using 16S rRNA DGGE. Results showed that the pH values on all treatments increased as incubation time became longer except for FA4 where it decreased. Moreover, FA4 incubated for 12 and 24 h was not detected in $NH_3$-N and $H_2S$. Addition of FAs decreased (p<0.05) propionate production but increased (p<0.05) the total VFA production. Ten 16S rRNA DGGE bands were identified which ranged from 96 to 100% identity which were mostly isolated from the intestine. Similarity index showed three clearly different clusters: I (FA2 and FA3), II (Con and FA1), and III (FA4). Dominant bands which were identified closest to Eubacterium limosum (ATCC 8486T), Uncultured bacterium clone PF6641 and Streptococcus lutetiensis (CIP 106849T) were present only in the FA4 treatment group and were not found in other groups. FA4 had a different bacterial diversity compared to control and other treatments and thus explains having lowest odorous compounds. Addition of FA4 to an enriched protein feed source for growing swine may effectively reduce odorous compounds which are typically associated with swine production.

Evaluation of the taxonomic rank of the terrestrial orchid Cephalanthera subaphylla based on allozymes

  • CHUNG, Mi Yoon;SON, Sungwon;CHUNG, Jae Min;LOPEZ-PUJOL, Jordi;YUKAWA, Tomohisa;CHUNG, Myong Gi
    • Korean Journal of Plant Taxonomy
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    • v.49 no.2
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    • pp.118-126
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    • 2019
  • The taxonomic rank of the tiny-leaved terrestrial orchid Cephalanthera subaphylla Miyabe & $Kud{\hat{o}}$ has been somewhat controversial, as it has been treated as a species or as an infraspecific taxon, under C. erecta (Thunb.) Blume [C. erecta var. subaphylla (Miyabe & $Kud{\hat{o}}$) Ohwi and C. erecta f. subaphylla (Miyabe & $Kud{\hat{o}}$) M. Hiro]. Allozyme markers, traditionally employed for delimiting species boundaries, are used here to gain information for determining the taxonomic status of C. subaphylla. To do this, we sampled three populations of five taxa (a total of 15 populations) of Cephalanthera native to the Korean Peninsula [C. erecta, C. falcata (Thunb.) Blume, C. longibracteata Blume, C. longifolia (L.) Fritsch, and C. subaphylla]. Among 20 putative loci resolved, three were monomorphic (Dia-2, Pgi-1, and Tpi-1) across the five species. Apart from C. longibracteata, there was no allozyme variation within the remaining four species. Of the 51 alleles harbored by these 17 polymorphic loci, each of the 27 alleles at 14 loci was unique to a single species. Accordingly, we found low average values of Nei's genetic identities (I) between ten species pairs (from I = 0.250 for C. erecta versus C. longifolia to I = 0.603 for C. falcata vs. C. longibracteata), with C. subaphylla being genetically clearly differentiated from the other species (from I = 0.349 for C. subaphylla vs. C. longifolia to 0.400 for C. subaphylla vs. C. falcata). These results clearly indicate that C. subaphylla is not genetically related to any of the other taxa of Cephalanthera that are native to the Korean Peninsula, including C. erecta. In a principal coordinate analysis (PCoA), C. subaphylla was positioned distant not only from C. falcata, C. longibracteata, and C. longifolia, but also from C. erecta. Finally, K = 5 was the best clustering scheme using a Bayesian approach, with five clusters precisely corresponding to the five taxa. Thus, our allozyme results strongly suggest that C. subaphylla merits the rank of species.

Micro-propagation Factors Essential for Mass Production of Synthetic Seeds in Banana

  • Hassanein A. M.;Ibrahiem I. A.;Galal A. A.;Salem J. M. M.
    • Journal of Plant Biotechnology
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    • v.7 no.3
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    • pp.175-181
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    • 2005
  • This work described some essential factors necessary for micro-propagation of banana for mass production of synthetic seeds for germ plasm conservation, and how peroxides activity of conserved tissue was influenced. Shoot tips of field grown plants were used to obtain shoot clusters on shoot proliferation medium (MS medium supplemented with 5 mg/l BAP). Using longitudinally-split shoot tip technique, 18720, 8640, 7488, 2016 plantlets were obtained from one shoot tip of Maghraby, Grand Naine, Balady, and Williams, respectively, in six subculture, one month each, on solid medium. Shoot tips excised from in vitro grown plantlets were encapsulated in calcium-alginate beads and stored at $4^{\circ}C$ for one month on half-strength MS basal medium without growth regulators or sugars. After one month all the viable-conserved synseeds formed shoots when they were transferred to MS basal medium, some of them showed synchronous formation of shoot and root systems in one week. Plants retrieved from encapsulated shoot tips were hardened off and transferred to soil.

Design of Main Transformer Fault Restoration Strategy Based on Pattern Clustering Method in Automated Substation (패턴 클러스터링 기법에 기반한 배전 변전소 주변압기 사고복구 전략 설계)

  • Ko, Yun-Seok
    • The Transactions of the Korean Institute of Electrical Engineers A
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    • v.55 no.10
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    • pp.410-417
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    • 2006
  • Generally, the training set of maximum $m{\times}L(m+f)$ patterns in the pattern recognition method is required for the real-time bus reconfiguration strategy when a main transformer fault occurs in the distribution substation. Accordingly, to make the application of pattern recognition method possible, the size of the training set must be reduced as efficient level. This Paper proposes a methodology which obtains the minimized training set by applying the pattern clustering method to load patterns of the main transformers and feeders during selected period and to obtain bus reconfiguration strategy based on it. The MaxMin distance clustering algorithm is adopted as the pattern clustering method. The proposed method reduces greatly the number of load patterns to be trained and obtain the satisfactory pattern matching success rate because that it generates the typical pattern clusters by appling the pattern clustering method to load patterns of the main transformers and feeders during selected period. The proposed strategy is designed and implemented in Visual C++ MFC. Finally, availability and accuracy of the proposed methodology and the design is verified from diversity simulation reviews for typical distribution substation.

Morphological and Ecological Study of Gastrolina depressa Baly (Coleoptera: Chrysomelidae) (호두나무잎벌레(Gastrolina depressa)의 형태적 및 생태학적 특성)

  • Chang, Seok-Jun;Park, Il-Kwon
    • Korean journal of applied entomology
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    • v.50 no.3
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    • pp.253-256
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    • 2011
  • The walnut leaf beetle, Gastrolina depressa, belongs to family Chrysomelidae (Coleoptera), and is one of the major pests of walnut trees. G. depressa eggs were oval and dark orange. The three G. depressa larval instars were gray in color. The larval period was approx. 8.14 days ($24^{\circ}C$, 16L:8D). Adults of both sexes were dark blue, and females were larger than males. Overwintered adults emerged in late April, and laid eggs in clusters on young leaves of the host tree. Mature 3rd instar larvae pupated after a short prepupal period. Adults emerged starting mid-May and entered into diapause shortly afterward.

Quantitative and Pattern Recognition Analyses for the Quality Evaluationof Herba Epimedii by HPLC

  • Nurul Islam, M.;Lee, Sang-Kyu;Jeong, Seo-Young;Kim, Dong-Hyun;Jin, Chang-Bae;Yoo, Hye-Hyun
    • Bulletin of the Korean Chemical Society
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    • v.30 no.1
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    • pp.137-144
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    • 2009
  • In this study, quantitative and pattern recognition analyses for the quality evaluation of Herba Epimedii using HPLC was developed. For quantitative analysis, five major bioactive constituents, hyperin, epimedin A, epimedin B, epimedin C, and icariin were determined. Analysis was carried out on Capcell pak $C_{18}$ column ($250{\time}4.6$ mm, 5 ${\mu}m$) with a mobile phase of mixture of acetonitrile and 0.1% formic acid, using UV detection at 270 nm. The linear behavior was observed over the investigated concentration range (2-50 ${\mu}g/mL;\;r_2\;>$ 0.99) for all analytes. The intraand inter-day precisions were lower than 4.3% (as a relative standard deviation, RSD) and accuracies between 95.1% and 104.4%. The HPLC analytical method for pattern recognition analysis was validated by repeated analysis of one reference sample. The RSD of intra- and inter-day variation of relative retention time (RRT) and relative peak area (RPA) of the 12 selected common peaks were below 0.8% and 4.7%, respectively. The developed methods were applied to analysis of twenty Herba Epimedii extract samples. Contents of hyperin, epimedin A, epimedin B, epimedin C, and icariin were calculated to be 0$\sim$0.79, 0.69$\sim$1.91, 0.93$\sim$9.58, 0.65$\sim$3.05, and 2.43$\sim$11.8 mg/g dried plant. Principal component analysis (PCA) showed that most samples were clustered together with the reference samples but several apart from the main cluster in the PC score plot, indicating differences in overall chemical composition between two clusters. The present study suggests that quantitative determination of marker compounds combined with pattern-recognition method can provide a comprehensive approach for the quality assessment of herbal medicines.

A Study on the Discriminant Variables of Face Skin Colors for the Korean Females (한국 여성의 얼굴 피부색 판별을 위한 색채 변수에 관한 연구)

  • Kim, Ku-Ja;Chung, Hae-Won
    • Journal of the Korean Society of Clothing and Textiles
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    • v.29 no.7 s.144
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    • pp.978-986
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    • 2005
  • The color of apparel products have a close relationship with the face skin colors of consumers. In order to extract the favorable colors which flatter to consumer's face skin colors, this study was carried our to classify the face skin colors of Korean females. The criteria that select new subjects who have the classified face skin colors have to be decided. With color spectrometer, JX-777, face skin colors of subjects were measured and classified into three clusters that had similar hue, value and chroma with Munsell Color System. Sample size was 324 Korean females and other new 10 college girls. Data were analyzed by K-means cluster analysis, ANOVA, Duncan multiple range test, Stepwise discriminant analysis using SPSS Win. 12. Findings were as follows: 1. 324 subjects who have YR colors were clustered into 3 face skin color groups. 2. Discriminant variables of face skin colors were 5 variables : b value of cheek, V value of forehead, L value of cheek, C value of forehead and H value of cheek by the standardized canonical discriminant function coefficient 1. 3. Hit ratio of type 1 was $96.8\%$, of type 2 was $94.9\%$, of type 3 was $100.0\%$ and mean of hit ratio was $96.9\%$ by canonical discriminant function of 5 variables. 4. With the unstandardized canonical discriminant function coefficient and constant, canonical discriminant function equation 1 and 2 were calculated. And cutting score and range of score of the classified types were computed. The criteria that select the new subjects were decided.

Complete genome sequence of Bacillus velezensis T20E-257, a plant growth-promoting bacterium, isolated from tomato (Solanum lycopersicum L.) root (토마토 뿌리에서 분리한 식물생육촉진 세균 Bacillus velezensis T20E-257균주의 유전체 염기서열)

  • Lee, Shin Ae;Kim, Sang Yoon;Sang, Mee Kyung;Song, Jaekyeong;Weon, Hang-Yeon
    • Korean Journal of Microbiology
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    • v.53 no.4
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    • pp.342-343
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    • 2017
  • Bacillus velezensis T20E-257 was isolated from the root tissue of a tomato plant and exhibited plant growth-promoting activity. Here we present the complete genome of strain T20E-257. The genome contains 3,900,066 base pairs with a G + C content of 46.7% in 2 contigs. The genome includes 3,708 coding sequences, 27 rRNAs, and 86 tRNAs. We found gene clusters encoding secondary metabolites with an antimicrobial activity and genes related to the production of indole-3-acetic acid and 2,3-butanediol, which play a role in plant growth and health.

High frequency direct plant regeneration from leaf, internode, and root segments of Eastern Cottonwood (Populus deltoides)

  • Yadav, Rakesh;Arora, Pooja;Kumar, Dharmendar;Katyal, Dinesh;Dilbaghi, Neeraj;Chaudhury, Ashok
    • Plant Biotechnology Reports
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    • v.3 no.3
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    • pp.175-182
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    • 2009
  • Simple, reproducible, high frequency, improved plant regeneration protocol in Eastern Cottonwood (Populus deltoides) clones, WIMCO199 and L34, has been reported. Initially, aseptic cultures established from axillary buds of nodal segments from mature plus trees on MS liquid medium supplemented with $0.25mg\;1^{-1}$ KIN and $0.25mg\;1^{-1}$ IAA. Nodal and internodal segments were found to be extra-prolific over shoot apices during course of aseptic culture establishment, while $0.25mg\;1^{-1}$ KIN concentration played a stimulatory role in high frequency plant regeneration. Diverse explants, such as various leaf segments, internodes, and roots from in vitro raised cultures, were employed. Direct plant regeneration was at high frequency of 92% in internodes, 88% in leaf segments, and 43% in root segments. This led to the formation of multiple shoot clusters on established culture media with rapid proliferation rates. Many-fold enhanced shoot elongation and growth of the clusters could be achieved on liquid MS medium supplemented with borosilicate glass beads, which offer physical support for proliferating shoots leading to faster growth in comparison to semi-solid agar or direct liquid medium. SEM examination of initial cultures confirmed direct plant regeneration events without intervening calli. In vitro regenerated plants induced roots on half-strength MS medium with $0.15mg\;1^{-1}$ IAA. Rooted 5- to 6-week-old in vitro regenerated plants were transferred into a transgenic greenhouse in pots containing 1:1 mixture of vermicompost and soil at $27{\pm}2^{\circ}C$ for hardening and acclimatization. 14- to 15-week-old well-established hardened plants were transplanted to the field and grown to maturity. The mature in vitro raised poplar trees exhibited a high survival rate of 85%; 4-year-old healthy trees attained an average height of 8 m and an average trunk diameter of 25 cm and have performed well under field conditions. The regeneration protocol presented here will be very useful for undertaking genetic manipulation, providing a value addition to Eastern Cottonwood propagation in future.

Effects of Baicalin on Gene Expression Profiles during Adipogenesis of 3T3-L1 Cells (3T3-L1 세포의 지방세포형성과정에서 Baicalin에 의한 유전자 발현 프로파일 분석)

  • Lee, Hae-Yong;Kang, Ryun-Hwa;Chung, Sang-In;Cho, Soo-Hyun;Yoon, Yoo-Sik
    • Journal of the Korean Society of Food Science and Nutrition
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    • v.39 no.1
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    • pp.54-63
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    • 2010
  • Baicalin, a flavonoid, was shown to have diverse effects such as anti-inflammatory, anti-cancer, anti-viral, anti-bacterial and others. Recently, we found that the baicalin inhibits adipogenesis through the modulations of anti-adipogenic and pro-adipogenic factors of the adipogenesis pathway. In the present study, we further characterized the molecular mechanism of the anti-adipogenic effect of baicalin using microarray technology. Microarray analyses were conducted to analyze the gene expression profiles during the differentiation time course (0 day, 2 day, 4 day and 7 day) in 3T3-L1 cells with or without baicalin treatment. We identified a total of 3972 genes of which expressions were changed more than 2 fold. These 3972 genes were further analyzed using hierarchical clustering analysis, resulting in 20 clusters. Four clusters among 20 showed clearly up-regulated expression patterns (cluster 8 and cluster 10) or clearly down-regulated expression patterns (cluster 12 and cluster 14) by baicalin treatment for over-all differentiation period. The cluster 8 and cluster 10 included many genes which enhance cell proliferation or inhibit adipogenesis. On the other hand, the cluster 12 and cluster 14 included many genes which are related with proliferation inhibition, cell cycle arrest, cell growth suppression or adipogenesis induction. In conclusion, these data provide detailed information on the molecular mechanism of baicalin-induced inhibition of adipogenesis.