• Title/Summary/Keyword: isolation performance

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Isolation and Cytotoxic Potency of Endophytic Fungi Associated with Dysosma difformis, a Study for the Novel Resources of Podophyllotoxin

  • Hoa Thi Tran;Giang Thu Nguyen;Hong Ha Thi Nguyen;Huyen Thi Tran;Quang Hong Tran;Quang Ho Tran;Ngoc Thi Ninh;Phat Tien Do;Ha Hoang Chu;Ngoc Bich Pham
    • Mycobiology
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    • v.50 no.5
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    • pp.389-398
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    • 2022
  • Endophytic fungi are promising sources for the production of podophyllotoxin-an important anticancer compound, replacing depleted medical plants. In this study, the endophytes associated with Dysosma difformis-an ethnomedicinal plant species were isolated to explore novel sources of podophyllotoxin. Fifty-three endophytic fungi were isolated and identified by morphological observation and ITS-based rDNA sequencing, assigning them to 27 genera in 3 divisions. Fusarium was found the most prevalent genus with a colonization frequency of 11.11%, followed by Trametes (9.26%) and Penicillium (7.41%). Phylogenetic trees were constructed for the endophytic fungi community in two collection sites, Ha Giang and Lai Chau, revealing the adaptation of the species to the specific tissues and habitats. Cytotoxic activity of endophytic fungal extracts was investigated on cancer cell lines such as SK-LU-1, HL-60, and HepG2, demonstrating strong anti-cancer activity of six isolates belonging to Penicillium, Trametes, Purpureocillium, Aspergillus, and Ganoderma with IC50 value of lower than 10 ㎍/mL. The presence of podophyllotoxin was indicated in Penicillium, Trametes, Aspergillus and for the first time in Purpureocillium and Ganoderma via high-performance liquid chromatography, which implied them as a potential source of this anticancer compound.

Improvement of PCR Preprocessing Efficiency through PEO-controlled Synthesis of Silica Nanofibers (PCR 전처리 효율 향상을 위한 PEO 제어 실리카 나노섬유 제작)

  • Seung-Min Lee;Hyeon-Ho Choi;Kwang-Ho Lee
    • Journal of Biomedical Engineering Research
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    • v.44 no.6
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    • pp.465-475
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    • 2023
  • In this study, we demonstrated a silica nanofibrous membrane based on the electrospinning process and evaluated its DNA isolation and purification performance in PCR pretreatment. Generally, silica membranes made of non-woven fabric are used for PCR pretreatment, but this study aimed to improve the efficiency of the pretreatment process by developing a nanofiber-type silica membrane with high specific surface area and porosity. In order to manufacture a nanofiber-shaped silica film while maintaining the original physical properties of silica, nanofiber membranes produced by adding various concentrations of PEO (5 wt%, 8 wt%, and 10 wt%) to silica prepared by the sol-gel method were compared. In terms of nanofiber membrane production, the higher the PEO concentration, the more effective it was in producing nanofiber membranes. The produced silica nanofiber membrane was inserted to a pretreatment device used in commercial PCR equipment, and the pretreatment performance was compared and verified using Salmonella bacteria. When Salmonella was used, samples containing 5 wt% PEO showed superior PCR efficiency compared to samples containing 8 wt% and 10 wt% PEO. These results show that adding 5 wt% of PEO can effectively improve DNA purification and separation by producing a nanofiber-shaped silica film while maintaining the physical properties of silica. We expect that this study will contribute to the development of effective PCR pretreatment technology essential for various molecular biology applications.

i-Tree Canopy-based Decision Support Method for Establishing Climate Change Adaptive Urban Forests (기후변화적응형 도시림 조성을 위한 i-Tree Canopy 기반 의사결정지원 방안)

  • Tae Han Kim;Jae Young Lee;Chang Gil Song;Ji Eun Oh
    • Journal of the Semiconductor & Display Technology
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    • v.23 no.1
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    • pp.12-18
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    • 2024
  • The accelerated pace of climate crisis due to continuous industrialization and greenhouse gas emissions necessitates sustainable solutions that simultaneously address mitigation and adaptation to climate change. Naturebased Solutions (NbS) have gained prominence as viable approaches, with Green Infrastructure being a representative NbS. Green Infrastructure involves securing green spaces within urban areas, providing diverse climate adaptation functions such as removal of various air pollutants, carbon sequestration, and isolation. The proliferation of Green Infrastructure is influenced by the quantification of improvement effects related to various projects. To support decision-making by assessing the climate vulnerability of Green Infrastructure, the U.S. Department of Agriculture (USDA) has developed i-Tree Tools. This study proposes a comprehensive evaluation approach for climate change adaptation types by quantifying the climate adaptation performance of urban Green Infrastructure. Using i-Tree Canopy, the analysis focuses on five urban green spaces covering more than 30 hectares, considering the tree ratio relative to the total area. The evaluation encompasses aspects of thermal environment, aquatic environment, and atmospheric environment to assess the overall eco-friendliness in terms of climate change adaptation. The results indicate that an increase in the tree ratio correlates with improved eco-friendliness in terms of thermal, aquatic, and atmospheric environments. In particular, it is necessary to prioritize consideration of the water environment sector in order to realize climate change adaptive green infrastructure, such as increasing green space in urban areas, as it has been confirmed that four out of five target sites are specialized in improving the water environment.

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Investigations on seismic performance of nuclear power plants equipped with an optimal BIS-TMDI considering FSI effects

  • Shuaijun Zhang;Gangling Hou;Chengyu Yang;Zhihua Yue;Yuzhu Wang;Min He;Lele Sun;Xuesong Cai
    • Nuclear Engineering and Technology
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    • v.56 no.7
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    • pp.2595-2609
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    • 2024
  • This paper introduces a base isolation system-tuned mass damper inerter (BIS-TMDI) hybrid system to the AP1000 nuclear power plant (NPP), which reduces seismic damage potential of the NPP structure. The effects of fluid-structure interaction (FSI) caused by the passive containment cooling system water storage tank (PCCWST) on NPP's seismic performance are investigated. The FSI of water tank theoretical model is considered based on the Housner's model, and a series of time history analyses are performed to prove the rationality of the proposed model. Three single-objective optimization strategies are employed to minimize the relative displacement variance and absolute acceleration variance of the upper structure, as well as the filtered energy index (FEI). Furthermore, a multi-objective optimization strategy considering all these three indexes is proposed to obtain optimal parameters of vibration control. The influence of vibration control strategies on the relative deformation and acceleration of the upper structure is explored with various water level ratios. The analytical results indicate that the proposed BIS-TMDI strategy has significantly reduced the NPP structure's seismic response. The effectiveness of the vibration control strategy is influenced by the water level ratio, emphasizing the significance of designing an appropriate water level ratio to reduce NPP structure's seismic response.

Isolation and Development of Quantification Method for Cyanidin-3-Glucoside and Cyanidin-3-Rutinoside in Mulberry Fruit by High-Performance Countercurrent Chromatography and High-Performance Liquid Chromatography

  • Choi, Soo-Jung;Jeon, Heejin;Lee, Chang Uk;Yoon, Shin Hee;Bae, Soo Kyung;Chin, Young-Won;Yoon, Kee Dong
    • Natural Product Sciences
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    • v.21 no.1
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    • pp.20-24
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    • 2015
  • Cyanidin-3-glucoside (C3G) and cyanidin-3-rutinoside (C3R) were isolated by high-performance countercurrent chromatography (HPCCC) using a two-phase solvent system composed of tert-butyl methyl ether/n-butanol/acetonitrile/water/trifluoroacetic acid (1 : 3 : 1 : 5 : 0.01, v/v) to give pure C3G (34.1 mg) and C3R (14.3 mg) from 1.5 g crude mulberry fruit extract. Using the pure C3G and C3R, a reliable high-performance liquid chromatography (HPLC) method was developed and validated to determine the C3G and C3R contents in mulberry fruit. C3G and C3R were separated simultaneously using an Eclipse XDB-C18 column ($4.6{\times}250mm$ I.D., $5{\mu}m$) coupled with a photodiode array detector (PDA). The gradient elution of the mobile phase consisting of acetonitrile (0.5% formic acid) and water (0.5% formic acid) was applied (1.0 mL/min), and the detection wavelength was 520 nm. The calibration curves of C3G and C3R showed good linearity (both with $r^2=0.9996$) in the concentration range $15.625-500{\mu}g/mL$, and the relative standard deviations (RSD%) of intra- and inter-day variability were in the ranges 2.1 - 8.2% and 4.1 - 17.1%, respectively. The accuracies were ranged 96.5 - 102.6% for C3G and C3R, respectively. The developed HPLC method was used to determine the contents of C3G and C3R in newly harvested mulberry from eight different provinces of Korea.

A Study on the Seismic Performance Design of Waterproofing Materials Applied Single-side Walls on Underground Structures (지하 구조물 외벽에 적용되는 방수재료의 구조체 거동 및 진동 대응 성능 설계 제안 연구)

  • Kim, Soo-Yeon;Kim, Meong-Ji;Oh, Sang-Keun
    • Journal of the Korea institute for structural maintenance and inspection
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    • v.24 no.1
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    • pp.43-50
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    • 2020
  • In this study, the possibility of seismic performance design was proposed and the quality verification test method was reviewed as part of the design of waterproof performance in underground walls under accelerated environment conditions for waterproofing materials, which are barrier and finishing material that can prevent ingress or overflowing water from inside and outside of a building by attaching all of the construction materials used in construction structures. Considering the current state of earthquake-resistant design of construction materials in Korea and abroad, seismic product groups are rare and mostly dependent on construction methods because there are no regulations on materials, although there are still regulations on earthquake-resistant design in the building process under the current law. Overseas, it was possible to confirm that various building materials that gave seismic performance to non-structural materials, such as Japan, Canada, and Germany, are being developed. If it is possible to have a complementary response to earthquakes in the advanced external waterproofing materials, it can be expected to be applicable as leak prevention and prevention technology along with the seismic designed structure.

Performance Experiments and Analysis of Nonlinear Behavior for HDRB using in Seismic Isolation (면진용 고감쇠 적층고무베어링의 성능 특성 실험 및 비선형 거동해석)

  • Koo, Gyeong-Hoi;Lee, Jae-Han;Yoo, Bong
    • Journal of the Earthquake Engineering Society of Korea
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    • v.2 no.4
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    • pp.73-86
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    • 1998
  • The purpose of this paper is to evaluate the shear stiffness, hysteretic behavior, and ultimate behavior of HDRB(High Damping Rubber Bearing), which will be included in the seismic isolation design guideline as requirements. To do this, two 1/8 scaled HDRB are designed, fabricated, and tested to show the mechanical characteristics. The shear stiffness obtained from the proposed equation of the shear stiffness shows a good agreement with those of the experiments. For analysis of the hysteretic behavior of HDRB using the modified rate model, the parameter equations are obtained from the experiments. Using the obtained parameter equations for the modified rate model, the seismic response analyses are carried out for 1-D system. The results of analysis well follow the hysteretic behavior of HDRB obtained from the experiments. To evaluate the ultimate behavior of HDRB used in this paper, the analyses are carried out using the modified macro model, which can consider the large shear deflection. The critical shear strain(CSS) is defined to express the maximum allowable shear strain and vertical load. From the analyses, the CSS, showing the instability, decreases significantly as increased the vertical loads. The CSS is not appeared for the design vertical load in the used HDRB. In analysis using about 5 times of design vertical load, the HDRB start to show the instability transient and for about 7 times, the CSS is about 350%.

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Isolation and In Vitro Antimicrobial Activity of Low Molecular Phenolic Compounds from Burkholderia sp. MP-1 (Brukholderia sp. MP-1 에서의 페놀화합물의 분리와 항균활성의 측정)

  • Mao, Sopheareth;Jin, Rong-De;Lee, Seung-Je;Kim, Yong-Woong;Kim, In-Seon;Shim, Jae-Han;Park, Ro-Dong;Kim, Kil-Yong
    • Korean Journal of Soil Science and Fertilizer
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    • v.39 no.4
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    • pp.195-203
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    • 2006
  • An antagonistic strain, Burkholderia MP-1, showed antimicrobial activity against various filamentous plant pathogenic fungi, yeasts and food borne bacteria (Gram-positive and Gram-negative). The nucleotide sequence of the 16S rRNA gene (1491 pb) of strain MP-1 exhibited close similarity (99-100%) with other Burkholderia 16S rRNA genes. Isolation of the antibiotic substances from culture broth was fractionated by ethyl acetate (EtOAc) solvent and EtOAc-soluble acidic fraction. The antibiotic substances were purified through a silica gel, Sephadex LH-20, ODS column chromatography, and high performance liquid chromatography, respectively. Four active substances were identified as phenylacetic acid, hydrocinnamic acid, 4-hydroxyphenylacetic acid and 4-hydroxyphenylacetate methyl ester by gas chromatographic-mass spectrum analysis. The minimum inhibition of concentration (MIC) of each active compound inhibited the growth of the microorganisms tested at 250 to $2500{\mu}g\;ml^{-1}$. The antimicrobial activity of crude acidic fraction at 1 mg of dry weight per 6 mm paper disc was more effective than authentic standard mixture (four active substances were mixed with the same ratio as acidic fraction) over a wide range of bacterial test.

Isolation, Root Colonization and Evaluation of Some Plant Growth-promoting Rhizobacteria in Paddy Rice

  • Kang, Ui-Gum;Park, Hyang-Mi;Ko, Jee-Yeon;Lee, Jae-Saeng;Jeon, Weon-Tai;Park, Chang-Young;Park, Ki-Do;Chebotar, Vladimir K.
    • Korean Journal of Soil Science and Fertilizer
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    • v.50 no.3
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    • pp.135-149
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    • 2017
  • In order to obtain promising rice growth-promoting microbial strains that can be used as substitutes for chemical fertilizers, 172 bacterial strains were isolated from rice roots grown in Korean and Russian soils. Out of them, the strains KR076, KR083, KR181 and RRj228 showed plant growth-promoting activities on maize seedlings. Bacillus megaterium KR076 and Bacillus sp. KR083 showed both nitrogen-fixing and plant growth-promoting activities, while Rhizobium sp. KR181 and Pseudomonas sp. RRj228 appeared to support only plant growth-promotion, but not $N_2$ fixation. Especially, RRj228 showed high growth promoting activity at low concentrations. Inoculation studies with KR083 and RRj228 revealed a high affinity to the Japonica rice variety such as Junambyeo than the Korean Tongil type variety such as Arumbyeo. Both KR083 and RRj228 strains showed rhizoplane and/or endophytic colonization in Japonica and Tongil types rice when soaked with the bacterial suspension of $1.1{\times}10^5cfu\;ml^{-1}$ for six and twelve hours. However, the total bacterial cell numbers were higher in the roots of Japonica variety than in the Tongil type. In inoculation trials with Daesanbyeo rice variety, the seedlings inoculated with KR181 and RRj228 at the rate of $2.0{\times}10^6cfu\;ml^{-1}$ showed yield increment of 35% and 33% (p < 0.01), respectively, so that they contributed to the replacement of chemical fertilizer at half doses of N, $P_2O_5$, and $K_2O$ in pots. In Junambyeo rice seedlings, the strain RRj228, when inoculated with a cell suspension of $1.8{\times}10^6cfu\;ml^{-1}$, promoted 3.4% higher yield at 70% dose than at a full dose level of N $110kg\;ha^{-1}$ in field. These results suggest that the rhizobacteria KR181 and RRj228 are prospective strains for enhancing rice performance.

Isolation and characterization of a novel gossypol-degrading bacteria Bacillus subtilis strain Rumen Bacillus Subtilis

  • Zhang, Yunhua;Zhang, Zhengyou;Dai, Li;Liu, Ying;Cheng, Maoji;Chen, Lijuan
    • Asian-Australasian Journal of Animal Sciences
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    • v.31 no.1
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    • pp.63-70
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    • 2018
  • Objective: The aim of the study was to isolate gossypol-degrading bacteria and to assess its potential for gossypol degradation. Methods: Rumen liquid was collected from fistulated cows grazing the experimental pasture. Approximately 1 mL of the rumen liquid was spread onto basal medium plates containing 2 g/L gossypol as the only source of carbon and was then cultured at $39^{\circ}C$ to isolate gossypol-degrading bacteria. The isolated colonies were cultured for 6 h and then their size and shape observed by microscope and scanning electron microscope. The 16S rRNA gene of isolated colonies was sequenced and aligned using National Center for Biotechnology Information-Basic Local Alignment Search Tool. The various fermentation conditions, initial pH, incubation temperature, inoculum level and fermentationperiod were analyzed in cottonseed meal (CSM). The crude protein (CP), total gossypol (TG), and free gossypol (FG) were determined in CSM after fermentation with isolated strain at $39^{\circ}C$ for 72 h. Results: Screening results showed that a single bacterial isolate, named Rumen Bacillus Subtilis (RBS), could use gossypol as a carbon source. The bacterium was identified by 16S rDNA sequencing as being 98% homologous to the sequence of Bacillus subtilis strain GH38. The optimum fermentation conditions were found to be 72 h, $39^{\circ}C$, pH 6.5, moisture 50%, inoculum level $10^7cell/g$. In the optimum fermentation conditions, the FG and TG content in fermented CSM decreased 78.86% and 49% relative to the control. The content of CP and the essential amino acids of the fermented CSM increased respectively, compared with the control. Conclusion: The isolation of a gossypol-degrading bacterium from the cow rumen is of great importance for gossypol biodegradation and may be a valuable potential source for gossypol-degradation of CSM.