• Title/Summary/Keyword: host-based

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Analysis of Genetic and Pathogenic Diversity of Ralstonia solanacearum Causing Potato Bacterial Wilt in Korea

  • Cho, Heejung;Song, Eun-Sung;Lee, Young Kee;Lee, Seungdon;Lee, Seon-Woo;Jo, Ara;Lee, Byoung-Moo;Kim, Jeong-Gu;Hwang, Ingyu
    • The Plant Pathology Journal
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    • v.34 no.1
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    • pp.23-34
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    • 2018
  • The Ralstonia solanacearum species complex (RSSC) can be divided into four phylotypes, and includes phenotypically diverse bacterial strains that cause bacterial wilt on various host plants. This study used 93 RSSC isolates responsible for potato bacterial wilt in Korea, and investigated their phylogenetic relatedness based on the analysis of phylotype, biovar, and host range. Of the 93 isolates, twenty-two were identified as biovar 2, eight as biovar 3, and sixty-three as biovar 4. Applied to the phylotype scheme, biovar 3 and 4 isolates belonged to phylotype I, and biovar 2 isolates belonged to phylotype IV. This classification was consistent with phylogenetic trees based on 16S rRNA and egl gene sequences, in which biovar 3 and 4 isolates clustered to phylotype I, and biovar 2 isolates clustered to phylotype IV. Korean biovar 2 isolates were distinct from biovar 3 and 4 isolates pathologically as well as genetically - all biovar 2 isolates were nonpathogenic to peppers. Additionally, in host-determining assays, we found uncommon strains among biovar 2 of phylotype IV, which were the tomato-nonpathogenic strains. Since tomatoes are known to be highly susceptible to RSSC, to the best of our knowledge this is the first report of tomato-nonpathogenic potato strains. These results imply the potential prevalence of greater RSSC diversity in terms of host range than would be predicted based on phylogenetic analysis.

Exosomes Secreted by Toxoplasma gondii-Infected L6 Cells: Their Effects on Host Cell Proliferation and Cell Cycle Changes

  • Kim, Min Jae;Jung, Bong-Kwang;Cho, Jaeeun;Song, Hyemi;Pyo, Kyung-Ho;Lee, Ji Min;Kim, Min-Kyung;Chai, Jong-Yil
    • Parasites, Hosts and Diseases
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    • v.54 no.2
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    • pp.147-154
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    • 2016
  • Toxoplasma gondii infection induces alteration of the host cell cycle and cell proliferation. These changes are not only seen in directly invaded host cells but also in neighboring cells. We tried to identify whether this alteration can be mediated by exosomes secreted by T. gondii-infected host cells. L6 cells, a rat myoblast cell line, and RH strain of T. gondii were selected for this study. L6 cells were infected with or without T. gondii to isolate exosomes. The cellular growth patterns were identified by cell counting with trypan blue under confocal microscopy, and cell cycle changes were investigated by flow cytometry. L6 cells infected with T. gondii showed decreased proliferation compared to uninfected L6 cells and revealed a tendency to stay at S or G2/M cell phase. The treatment of exosomes isolated from T. gondii-infected cells showed attenuation of cell proliferation and slight enhancement of S phase in L6 cells. The cell cycle alteration was not as obvious as reduction of the cell proliferation by the exosome treatment. These changes were transient and disappeared at 48 hr after the exosome treatment. Microarray analysis and web-based tools indicated that various exosomal miRNAs were crucial for the regulation of target genes related to cell proliferation. Collectively, our study demonstrated that the exosomes originating from T. gondii could change the host cell proliferation and alter the host cell cycle.

Design and Implementation of a Host Interface for a Regular Expression Processor (정규표현식 프로세서를 위한 호스트 인터페이스 설계 및 구현)

  • Kim, JongHyun;Yun, SangKyun
    • KIISE Transactions on Computing Practices
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    • v.23 no.2
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    • pp.97-103
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    • 2017
  • Many hardware-based regular expression matching architectures have been proposed for high-performance matching. In particular, regular expression processors, which perform pattern matching by treating the regular expressions as the instruction sequence like general purpose processors, have been proposed. After instruction sequence and data are provided in the instruction memory and data memory, respectively, a regular expression processor can perform pattern matching. To use a regular expression processor as a coprocessor, we need the host interface to transfer the instruction and data into the memory of a regular expression processor. In this paper, we design and implement the host interface between a host and a regular expression processor in the DE1-SoC board and the application program interface. We verify the operations of the host interface and a regular expression processor by executing the application programs which perform pattern matching using the application program interface.

Relationships between Structural Features and Biological Activities of HC-toxin

  • Kim, Shin-Duk
    • BMB Reports
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    • v.28 no.3
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    • pp.227-231
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    • 1995
  • In order to figure out the relationships between structural features and biological activity of the host-specific HC-toxin in maize, structurally related cyclic tetrapeptides, chlamydocin and CYL-2 were isolated, and their biological activities in maize were examined. Biological activities of preparations were determined by root growth inhibition and electrolyte leakage bioassays. Chlamydocin and CYL-2 showed toxicities to maize. However, the toxicities of these compounds were non-specific. Thus, the precise peptide ring structure of HC-toxin apparently does not play an important role in toxicity, while resistance of maize to HC-toxin is based on a precise ring conformation.

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Comparative Pathogenicity and Host Ranges of Magnaporthe oryzae and Related Species

  • Chung, Hyunjung;Goh, Jaeduk;Han, Seong-Sook;Roh, Jae-Hwan;Kim, Yangseon;Heu, Sunggi;Shim, Hyeong-Kwon;Jeong, Da Gyeong;Kang, In Jeong;Yang, Jung-Wook
    • The Plant Pathology Journal
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    • v.36 no.4
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    • pp.305-313
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    • 2020
  • Host shifting and host expansion of fungal plant pathogens increases the rate of emergence of new pathogens and the incidence of disease in various crops, which threaten global food security. Magnaporthe species cause serious disease in rice, namely rice blast disease, as well as in many alternative hosts, including wheat, barley, and millet. A severe outbreak of wheat blast due to Magnaporthe oryzae occurred recently in Bangladesh, after the fungus was introduced from South America, causing great loss of yield. This outbreak of wheat blast is of growing concern, because it might spread to adjacent wheat-producing areas. Therefore, it is important to understand the host range and population structure of M. oryzae and related species for determining the evolutionary relationships among Magnaporthe species and for managing blast disease in the field. Here, we collected isolates of M. oryzae and related species from various Poaceae species, including crops and weeds surrounding rice fields, in Korea and determined their phylogenetic relationships and host species specificity. Internal transcribed spacer-mediated phylogenetic analysis revealed that M. oryzae and related species are classified into four groups primarily including isolates from rice, crabgrass, millet and tall fescue. Based on pathogenicity assays, M. oryzae and related species can infect different Poaceae hosts and move among hosts, suggesting the potential for host shifting and host expansion in nature. These results provide important information on the diversification of M. oryzae and related species with a broad range of Poaceae as hosts in crop fields.

Global Mobility Support in Network Based Proxy Mobile IPv6 (네트워크 기반 프록시 모바일 IPv6에서 글로벌 이동 지원에 관한 연구)

  • Phung, Gia Khiem;Ro, Soong-Hwan
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.35 no.7A
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    • pp.688-696
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    • 2010
  • The Proxy Mobile IPv6 (PMIPv6) is a network localized mobility management protocol that is independent of global mobility management protocols. In a single mobility domain (LMD), the mobile node (MN) is not involved in any IP mobility-related signaling and uses only its PMIPv6 home address for all its communication. Subsequently, when the MN moves into another LMD, the MN must change its PMIPv6 home address. In such a circumstance, host-based mobility signaling is activated. Thus, the nature of the network-based mobility of the PMIPv6 cannot be retained. Additionally, if the MN does not support global mobility, it cannot maintain communication with its correspondent node (CN). In this paper, we propose a solution for global mobility support in PMIPv6 networks, called Global-PMIPv6 that allows current communication sessions of a MN without mobility protocol stacks to be maintained, even when the MN moves into another LMD. Thus, Global-PMIPv6 retains the advantages of the PMIPv6 for global mobility support. We then evaluate and compare network performance between our proposed solution and PMIPv6.

Stabilization of Compact Protein Structures by Macrocyclic Hosts Cucurbit[n]urils in the Gas Phase

  • Lee, Jong Wha;Park, Mi Hyun;Ju, Jeong Tae;Choi, Yun Seop;Hwang, Soo Min;Jung, Dong Jin;Kim, Hugh I.
    • Mass Spectrometry Letters
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    • v.7 no.1
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    • pp.16-20
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    • 2016
  • Characterization of intact protein structures in the gas phase using electrospray ionization combined with ion mobility mass spectrometry has become an important tool of research. However, the biophysical properties that govern the structures of protein ions in the gas phase remain to be understood. Here, we investigated the impact of host-guest complexation of ubiquitin (Ubq) with macrocyclic host molecules, cucurbit[n]urils (CB[n]s, n = 6, 7), on its structure in the gas phase. We found that CB[n] complexation induces the formation of compact Ubq ions. Both CB[6] and CB[7] exhibited similar effects despite differences in their binding properties in solution. In addition, CB[n] attachment prevented Ubq from unfolding by collisional activation. Based on the experimental results, we suggest that CB[n]s prevent unfolding of Ubq during transfer to the gas phase to promote the formation of compact protein ions. Furthermore, interaction with positively charged residues per se is suggested to be the most important factor for the host-guest complexation effect.

Highly Efficient Phosphorescent White Organic Light-Emitting Devices with a Poly(N-vinylcarbazole) Host Layer

  • Kang, Min-Ki;Moon, Dae-Gyu
    • Transactions on Electrical and Electronic Materials
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    • v.12 no.2
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    • pp.80-83
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    • 2011
  • We have fabricated phosphorescent white organic light-emitting devices (WOLEDs) with a spin-coated poly(Nvinylcarbazole) [PVK] host layer. Iridium(III) bis[(4,6-difluorophenyl)-pyridinato-N,$C^{2'}$]picolinate (FIrpic), tris(2-phenylpyridine)iridium(III) [$Ir(ppy)_3$], and tris(2-phenyl-1-quinoline)iridium(III) [$Ir(phq)_3$], were used as the blue, green, and red guest materials, respectively. The PVK was mixed with FIrpic, $Ir(ppy)_3$, and $Ir(phq)_3$ molecules in a chlorobenzene solution and spin-coated in order to prepare the emission layer; 3-(4-biphenylyl)-4-phenyl-5-(4-tertbutylphenyl)-1,2,4-triazole (TAZ) was used as an electron transport material. The resultant device structure was ITO/PVK:FIrpic:$Ir(ppy)_3:Ir(phq)_3$/TAZ/LiF/Al. The electroluminescence, efficiency, and electrical conduction characteristics of the WOLEDs based on the doped PVK host layer were investigated. The maximum current efficiency of the three wavelength WOLED with the doped PVK host was 19.2 cd/A.

Occurrence types and mineralogical characteristics of asbestos for the Kwangcheon area, Chungnam (충남 광천지역 석면의 산출 유형 및 광물학적 특징)

  • Song, Suckhwan;Hwang, Jung Hwan;Hwang, Byum Goo;Kim, Hyunwook
    • Journal of Korean Society of Occupational and Environmental Hygiene
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    • v.18 no.4
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    • pp.271-281
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    • 2008
  • This study is to characterize the occurrence types and mineralogical characteristics of asbestos for the Kwangcheon areas, Chungnam. The mine areas had been exploited as asbestos mines for several decades since 1930. Host rocks of the asbestos are serpentinites and altered rocks of the ultramafic rocks. Representative samples of the host rocks and minerals were sampled and were examined with microscopes. To confirm for the existences and compositions for the asbestos, the rock samples were analysed with EPMA, XRD and EDS. Chrysotile, tremolite and actinolite were found as asbestos and non-asbestos forms in these areas. Chrysotiles, as non-asbestos forms, occur in the host rocks with mesh and hourglass textures. They, as asbestos forms, are mainly found as the veins. The tremolite and actinolite, as asbestos types, occur as alteration products of the olivine and pyroxene within the host rocks. They, as asbestos types, are also found following the cracks and fractures. Overall results suggest that three types of the asbestos are found in the Kwangcheon and Kaewol mine areas. Based on the occurrence types for the asbestos, additional studies are required for the asbestos in the top soil and air.

Ascophyllum and Its Symbionts. VII. Three-way Interactions Among Ascophyllum nodosum (Phaeophyceae), Mycophycias ascophylli (Ascomycetes) and Vertebrata lanosa (Rhodophyta)

  • Garbary, David J.;Deckert, Ron J.;Hubbard, Charlene B.
    • ALGAE
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    • v.20 no.4
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    • pp.353-361
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    • 2005
  • Ascophyllum nodosum (L.) Le Jolis has a systemic infection with the ascomycete Mycophycias ascophylli (Cotton) Kohlmeyer and Volkmann-Kohlmeyer with which it establishese a mutualistic symbiosis. In addition, A. nodosum is the host for the obligate red algal epiphyte, Vertebrata lanosa (L.) Christensen. Using light and electron microscopy we describe morphological and cytochemical changes occurring as a consequence of rhizoid penetration of V. lanosa into cortical host tissue. Rhizoids induce localized cell necrosis based on physical damage during rhizoid penetration. Host cells adjacent to the rhizoid selectively undergo a hypersensitive reaction in which they become darkly pigmented and become foci for hyphal development. Light and electron microscopy show that M. ascophylli forms dense hyphal aggregations on the surface of the V. lanosa rhizoid and extensive endophytic hyphal growths in the rhizoid wall. This is the first morphological evidence of an interaction between M. ascophylli and V. lanosa. We speculate that M. ascophylli may be interacting with V. lanosa to limit tissue damage to their shared host. In addition, the fungus provides a potential pathway for the transfer of materials (e.g., nutrients and photosynthate) between the two phototrophs.