• 제목/요약/키워드: helix

검색결과 986건 처리시간 0.022초

Solution structure and functional analysis of HelaTx1: the first toxin member of the κ-KTx5 subfamily

  • Park, Bong Gyu;Peigneur, Steve;Esaki, Nao;Yamaguchi, Yoko;Ryu, Jae Ha;Tytgat, Jan;Kim, Jae Il;Sato, Kazuki
    • BMB Reports
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    • 제53권5호
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    • pp.260-265
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    • 2020
  • Scorpion venom comprises a cocktail of toxins that have proven to be useful molecular tools for studying the pharmacological properties of membrane ion channels. HelaTx1, a short peptide neurotoxin isolated recently from the venom of the scorpion Heterometrus laoticus, is a 25 amino acid peptide with two disulfide bonds that shares low sequence homology with other scorpion toxins. HelaTx1 effectively decreases the amplitude of the K+ currents of voltage-gated Kv1.1 and Kv1.6 channels expressed in Xenopus oocytes, and was identified as the first toxin member of the κ-KTx5 subfamily, based on a sequence comparison and phylogenetic analysis. In the present study, we report the NMR solution structure of HelaTx1, and the major interaction points for its binding to voltage-gated Kv1.1 channels. The NMR results indicate that HelaTx1 adopts a helix-loop-helix fold linked by two disulfide bonds without any β-sheets, resembling the molecular folding of other cysteine-stabilized helix-loop-helix (Cs α/α) scorpion toxins such as κ-hefutoxin, HeTx, and OmTx, as well as conotoxin pl14a. A series of alanine-scanning analogs revealed a broad surface on the toxin molecule largely comprising positively-charged residues that is crucial for interaction with voltage-gated Kv1.1 channels. Interestingly, the functional dyad, a key molecular determinant for activity against voltage-gated potassium channels in other toxins, is not present in HelaTx1.

Analysis of the solution structure of the human antibiotic peptide dermcidin and its interaction with phospholipid vesicles

  • Jung, Hyun-Ho;Yang, Sung-Tae;Sim, Ji-Yeong;Lee, Seung-Kyu;Lee, Ju-Yeon;Kim, Ha-Hyung;Shin, Song-Yub;Kim, Jae-Il
    • BMB Reports
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    • 제43권5호
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    • pp.362-368
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    • 2010
  • Dermcidin is a human antibiotic peptide that is secreted by the sweat glands and has no homology to other known antimicrobial peptides. As an initial step toward understanding dermcidin's mode of action at bacterial membranes, we used homonuclear and heteronuclear NMR to determine the conformation of the peptide in 50% trifluoroethanol solution. We found that dermcidin adopts a flexible amphipathic $\alpha$-helical structure with a helix-hinge-helix motif, which is a common molecular fold among antimicrobial peptides. Spin-down assays of dermcidin and several related peptides revealed that the affinity with which dermcidin binds to bacterial-mimetic membranes is primarily dependent on its amphipathic $\alpha$-helical structure and its length (>30 residues); its negative net charge and acidic pI have little effect on binding. These findings suggest that the mode of action of dermcidin is similar to that of other membrane-targeting antimicrobial peptides, though the details of its antimicrobial action remain to be determined.

착상 전 생쥐배아에서 Id 유전자의 발현 (Expression of Ids in Preimplantation Mouse Embryos)

  • 홍석호;나희영;이영진;이지원;손영수;채희동;김성훈;강병문;김정훈
    • Clinical and Experimental Reproductive Medicine
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    • 제31권4호
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    • pp.201-207
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    • 2004
  • Objective: The Id family of helix-loop-helix proteins are thought to affect the balance between cell growth and differentiation by negatively regulating the function of basic-helix-loop-helix (bHLH) transcriptional factors. The aim of this study was to investigate the expression pattern of Ids (Id-1, -2, -3, and -4) in preimplantation mouse embryos at mRNA and protein levels. Methods: Oocytes and preimplantation embryos were collected from reproductive organs of female ICR mice following superovulation. RT-PCR was performed to investigate the mRNA expression patterns of Id genes and their protein were localized by immunofluorescence analysis. Results: Id-1 and Id-3 mRNAs were strongly expressed at the germinal vesicle (GV) oocyte and the blastocyst stages. Id-2 mRNA was expressed throughout preimplantation embryo development, but Id-4 was not expressed. Immunofluorescence showed that Id-1 and Id-2 were predominantly localized in cytoplasmic region, but the immunofluorescence signal of Id-3 was weak throughout preimplantation embryo development. Conclusion: These data show for the first time that Ids are expressed in preimplantation mouse embryos and suggest that Ids may play an important role in early preimplantation embryo development and uterine physiological changes.

교정용 미니임플랜트 식립 위치에 따른 dragon helix의 효과에 대한 유한요소해석 (Effects of orthodontic mini-implant position in the dragon helix appliance on tooth displacement and stress distribution: a three-dimensional finite element analysis)

  • 김민지;박선형;김현성;모성서;성상진;장강원;전윤식
    • 대한치과교정학회지
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    • 제41권3호
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    • pp.191-199
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    • 2011
  • Objective: The purpose of this study was to investigate the stress distribution on the orthodontic mini-implant (OMI) surface and periodontal ligament of the maxillary first and second molars as well as the tooth displacement according to the OMI position in the dragon helix appliance during scissors-bite correction. Methods: OMIs were placed at two maxillary positions, between the first and the second premolars (group 1) and between the second premolar and the first molar (group 2). The stress distribution area (SDA) was analyzed by three-dimensional finite element analysis. Results: The maximal SDA of the OMI did not differ between the groups. It was located at the cervical area and palatal root apex of the maxillary first molar in groups 1 and 2, respectively, indicating less tipping in group 2. The minimal SDA was located at the root and furcation area of the maxillary second molar in groups 1 and 2, respectively, indicating greater palatal crown displacement in group 2. Conclusions: Placement of the OMI between the maxillary second premolar and the maxillary first molar to serve as an indirect anchor in the dragon helix appliance minimizes anchorage loss while maximizing the effect on scissors-bite correction.

Structurally Conserved Aromaticity of Tyr249 and Phe264 in Helix 7 Is Important for Toxicity of the Bacillus thuringiensis Cry4Ba Toxin

  • Tiewsiri, Kasorn;Angsuthanasombat, Chanan
    • BMB Reports
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    • 제40권2호
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    • pp.163-171
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    • 2007
  • Functional elements of the conserved helix 7 in the poreforming domain of the Bacillus thuringiensis Cry $\delta$- endotoxins have not yet been clearly identified. Here, we initially performed alanine substitutions of four highly conserved aromatic residues, $Trp^{243}$, $Phe^{246}$, $Tyr^{249}$ and $Phe^{264}$, in helix 7 of the Cry4Ba mosquito-larvicidal protein. All mutant toxins were overexpressed in Escherichia coli as 130-kDa protoxins at levels comparable to the wild-type. Bioassays against Stegomyia aegypti mosquito larvae revealed that only W243A, Y249A or F264A mutant toxins displayed a dramatic decrease in toxicity. Further mutagenic analysis showed that replacements with an aromatic residue particularly at $Tyr^{249}$ and $Phe^{264}$ still retained the high-level toxin activity. In addition, a nearly complete loss in larvicidal activity was found for Y249L/F264L or F264A/ Y249A double mutants, confirming the involvement in toxicity of both aromatic residues which face towards the same direction. Furthermore, the Y249L/F264L mutant was found to be structurally stable upon toxin solubilisation and trypsin digestion, albeit a small change in the circular dichroism spectrum. Altogether, the present study provides for the first time an insight into the highly conserved aromaticity of $Tyr^{249}$ and $Phe^{264}$ within helix 7 playing an important role in larvicidal activity of the Cry4Ba toxin.

사질토에서의 헬릭스 형상 및 위치에 따른 헬리컬 파일의 수직 및 수평 거동 분석 (Analysis of Vertical and Horizontal Behavior of Helical Piles in Sands Varying Helix Shapes and Locations)

  • 배종환;이준원;신세희;김동욱
    • 대한토목학회논문집
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    • 제40권4호
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    • pp.393-400
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    • 2020
  • 헬리컬 파일의 수직 및 수평 거동은 헬릭스의 개수, 직경, 피치, 위치등의 변수에 영향을 받는다. 본 연구에서는 헬리컬 파일의 헬릭스 개수를 3개로 고정하고, 헬릭스의 위치, 직경, 피치를 변화시켜 가며 수직 및 수평 거동을 분석하였다, 특히, 헬릭스는 일반적으로 나선형의 입체적인 구조를 가지기 때문에, 헬리컬 파일 상부에 작용하는 수평하중방향이 헬리컬 파일의 수평 거동에 미치는 영향을 분석하였다. 이를 위하여 축소모형의 헬리컬 파일을 이용하여 실내모형실험을 수행하였으며, 이 결과를 같은 모델의 수치해석 결과와 비교하여 두 결과의 타당성을 확보하였다. 이후, 수치해석적으로 다양한 헬리컬 파일 형상을 가정하여 수직 및 수평 거동을 분석하였다. 결과적으로, 가정한 환경에 대해서는 헬릭스의 위치와 피치의 간격보다는 헬릭스의 직경이 수직 및 수평 지지력에 가장 큰 영향을 미치는 것으로 확인되었다.

등가경사절삭 시스템에 의한 Inconel 718 엔드밀링 공정의 전단 및 마찰특성 해석 I -상향 엔드밀링- (The Shear and Friction Characteristics Analysis of Inconel 718 during End-milling process using Equivalent Oblique Cutting System I -Up Endmilling-)

  • 이영문;양승한;최원식;송태성;권오진;최용환
    • 한국정밀공학회지
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    • 제19권2호
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    • pp.79-86
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    • 2002
  • In end milling process the undeformed chip thickness and the cutting force components vary periodically with phase change of the tool. In this study, up end milling process is transformed to the equivalent oblique cutting. The varying undeformed chip thickness and the cutting force components in end milling process are replaced with the equivalent average ones. Then it can be possible to analyze the chip-tool friction and shear process in the shear plane of the end milling process by the equivalent oblique cutting system. According to this analysis, when cutting Inconel 718, 61, 64 and 55% of the total energy is consumed in the shear process with the helix angle 30$^{\circ}$, 40$^{\circ}$ and 50$^{\circ}$ respectively, and the balance is consumed in the friction process. With the helix angle of 40$^{\circ}$ the specific cutting energy consumed is smaller than with the helix angle 30$^{\circ}$ and 50$^{\circ}$.

Effects of the Hinge Region of Cecropin A(1-8)-Melittin 2(1-12), a Synthetic Antimicrobial Peptide on Antibacterial, Antitumor, and Vesicle-Disrupting Activity

  • Shin, Song-Yub;Kang, Joo-Hyun;Jang, So-Yun;Kim, KiI-Lyong;Hahm, Kyung-Soo
    • BMB Reports
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    • 제32권6호
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    • pp.561-566
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    • 1999
  • CA(1-8)-ME(1-12) [CA-ME], composed of cecropin A(1-8) and melittin(1-12), is a synthetic antimicrobial peptide having potent antibacterial and antitumor activities with minimal hemolytic activity. In order to investigate the effects of the flexible hinge sequence, Gly-Ile-Gly, of CA-ME on antibiotic activity, CA-ME and three analogues, CA-ME1, CA-ME2, and CA-ME3, were synthesized. The Gly-Ile-Gly sequence of Ca-ME was deleted in CA-ME1 and replaced with Pro and Gly-Pro-Gly in CA-ME2 and CA-ME3, respectively. CA-ME1 and CA-ME3 showed a significant decrease in antitumor activity and phospholipid vesicle-disrupting ability. However, CA-ME2 showed similar antitumor and vesicle-disrupting activities, as compared with CA-ME. These results suggest that the flexibility or ${\beta}$-turn induced by Gly-Ile-Gly or Pro in the central part of CA-ME may be important in the electrostatic interaction of the N-terminus cationic ${\alpha}$-helical region with the cell membrane surface and the hydrophobic interaction of the C-terminus amphipathic ${\alpha}$-helical region with the hydrophobic acyl chains in the cell membrane. CA-ME3 exhibited lower antitumor and vesicle-disrupting activities than CA-ME and CA-ME2. This result suggests that the excessive ${\beta}$-turn structure caused by the Gly-Pro-Gly sequence in CA-ME3 seems to interrupt ion channel/pore formation in the lipid bilayer. We concluded that the appropriate flexibility or bilayer. We concluded that the appropriate flexibility or ${\beta}$-turn structure provided by the central hinge is responsible for the effective antibiotic activity of the antimicrobial peptides with the helix-hinge-helix structure.

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전기적 소형 Folded Slot Spherical Helix 자기 다이폴 안테나에 관한 연구 (Investigation of Electrically Small Folded Slot Spherical Helix Magnetic Dipole Antenna)

  • 신건영;공명준;이수현;윤익재
    • 한국전자파학회논문지
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    • 제28권4호
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    • pp.261-268
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    • 2017
  • 본 논문에서는 FSSH(Folded Slot Spherical Helix) 자기 다이폴 안테나에 관한 추가적인 연구를 통해 안테나 시작품 제작에 용이성을 갖는 구조를 제안하고, 그 방사 특성을 분석하였다. FSSH 자기 다이폴 안테나의 folded element 개수와 그 사이 간의 거리 및 금속면의 두께를 조절하여 전기적 소형 크기에서 높은 효율을 유지하면서 상대적으로 간소화된 안테나 구조를 제안하였다. 시뮬레이션을 통해 제안된 안테나의 넓은 고효율 대역폭 특성을 non-Foster 정합회로를 통해 실질적으로 사용할 수 있음을 확인하였다. SLS(Selective Laser Sintering) 3D 프린팅 기술을 통해 안테나 시작품을 제작 및 측정하였다. 측정값은 구리 테이프 경계면의 높은 저항 손실로 인해 시뮬레이션에 비해 낮은 Q값 특성을 보인다.