• Title/Summary/Keyword: gyrB

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A case of Aeromonas veronii infection in Israeli carp (Cyprinus carpio): phylogenetic analysis and antimicrobial resistance (이스라엘 잉어(Cyprinus carpio)에서 Aeromonas veronii 감염증의 증례: phylogenetic analysis와 항생제 내성)

  • Yi, Seung-Won;You, Myung-Jo;Lee, Hae-Beom;Shin, Gee-Wook
    • Korean Journal of Veterinary Service
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    • v.35 no.3
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    • pp.239-243
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    • 2012
  • We reported an outbreak of Aeromonas (A.) veronii responsible for ulcerative dermatitis in Israeli carp (Cyprinus carpio). The major clinical signs were darkening body, abdominal extension, exophthalmos and severe ulcerative necrosis in the skin. The necropsy showed yellowish ascites, necrosis in liver and enlargement of kidney and spleen in the morbid fish. In blood agar for culturing bacteria, three different colonies were identified as A. veronii, Plesimonas shigelloides and Shewanella putrefaciens by phylogenetic identification using 16S rRNA or gyrB gene sequences. A. veronii was the most dominant species among them and was resistant to ampicillin, nalidixic acid and oxytetracycline.

Distribution of Antimicrobial Resistant Genes in Acinetobacter calcoaceticus-baumannii Complex Isolated from Clinical Specimens in Chungcheong, Korea (충청지역의 임상검체로부터 분리된 Acinetobacter calcoaceticus-baumannii Complex를 대상으로 항균제 내성 유전자 비교분석)

  • Sung, Ji Youn
    • Korean Journal of Clinical Laboratory Science
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    • v.49 no.4
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    • pp.427-434
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    • 2017
  • Species that belong to the Acinetobacter calcoaceticus-baumannii (Acb) complex are major causes of hospital-acquired infections. They are important opportunistic pathogens. These species are usually multidrug resistant (MDR), and the therapeutic options to treat the infections caused by these species are limited. In the present study, we investigated fluoroquinolone resistance mechanisms in 53 ciprofloxacin resistant Acinetobacter species isolates in Chungcheong, Korea. Antimicrobial susceptibilities were determined using the disk-diffusion method. Detections of genes and identification of mutations associated with fluoroquinolone resistance were carried out using PCR and DNA sequencing. In our study, 47 out of 53 ciprofloxacin resistant Acinetobacter isolates harbored sense mutations at the 83rd residue (serine to leucine) in the gyrA gene as well as at the 80th residue (serine to leucine) in the parC gene. Among the 47 isolates harboring sense mutations in gyrA and parC gene, 44 isolates were A. baumannii and 3 isolates were A. pittii. Plasmid-mediated quinolone resistance (PMQR) determinants were detected in isolates in our study. Among the 46 ciprofloxacin resistant A. baumannii isolates, 41 showed type A, B, or F banding patterns on their REP-PCR profiles. This result suggests that clonal relation and horizontal spreading of the bacterial isolates have been around hospitals in Chungcheong area. To prevent colonization and disseminations of fluoroquinolone resistance Acb complex isolates, continuous investigation and monitoring of antimicrobial resistant determinants of MDR isolates are needed.

RELATIVE AGE DIFFERENCE BETWEEN THE METAL-POOR GLOBULAR CLUSTERS M53 AND M92

  • CHO, DONG-HWAN;SUNG, HYUN-IL;LEE, SANG-GAK;YOON, TAE SEOG
    • Journal of The Korean Astronomical Society
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    • v.49 no.5
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    • pp.175-192
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    • 2016
  • CCD photometric observations of the globular cluster (GC), M53 (NGC 5024), are performed using the 1.8 m telescope at the Bohyunsan Optical Astronomy Observatory in Korea on the same nights (2002 April and 2003 May) as the observations of the GC M92 (NGC 6341) reported by Cho and Lee using the same instrumental setup. The data for M53 is reduced using the same method as used for M92 by Cho and Lee, including preprocessing, point-spread function fitting photometry, and standardization etc. Therefore, M53 and M92 are on the same photometric system defined by Landolt, and the photometry of M53 and M92 is tied together as closely as possible. After complete photometric reduction, the V versus B − V , V versus V − I, and V versus B − I color-magnitude diagrams (CMDs) of M53 are produced to derive the relative ages of M53 and M92 and derive the various characteristics of its CMDs in future analysis. From the present analysis, the relative ages of M53 and M92 are derived using the Δ(B − V ) method reported by VandenBerg et al. The relative age of M53 is found to be 1.6 ± 0.85 Gyr younger than that of M92 if the absolute age of M92 is taken to be 14 Gyr. This relative age difference between M53 and M92 causes slight differences in the horizontal-branch morphology of these two GCs.

Profiles of Bacillus spp. Isolated from the Rhizosphere of Suaeda glauca and Their Potential to Promote Plant Growth and Suppress Fungal Phytopathogens

  • Lu, Ping;Jiang, Ke;Hao, Ya-Qiao;Chu, Wan-Ying;Xu, Yu-Dong;Yang, Jia-Yao;Chen, Jia-Le;Zeng, Guo-Hong;Gu, Zhou-Hang;Zhao, Hong-Xin
    • Journal of Microbiology and Biotechnology
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    • v.31 no.9
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    • pp.1231-1240
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    • 2021
  • Members of the genus Bacillus are known to play an important role in promoting plant growth and protecting plants against phytopathogenic microorganisms. In this study, 21 isolates of Bacillus spp. were obtained from the root micro-ecosystem of Suaeda glauca. Analysis of the 16S rRNA genes indicated that the isolates belong to the species Bacillus amyloliquefaciens, Bacillus velezensis, Bacillus subtilis, Bacillus pumilus, Bacillus aryabhattai and Brevibacterium frigoritolerans. One of the interesting findings of this study is that the four strains B1, B5, B16 and B21 are dominant in rhizosphere soil. Based on gyrA, gyrB, and rpoB gene analyses, B1, B5, and B21 were identified as B. amyloliquefaciens and B16 was identified as B. velezensis. Estimation of antifungal activity showed that the isolate B1 had a significant inhibitory effect on Fusarium verticillioides, B5 and B16 on Colletotrichum capsici (syd.) Butl, and B21 on Rhizoctonia cerealis van der Hoeven. The four strains grew well in medium with 1-10% NaCl, a pH value of 5-8, and promoted the growth of Arabidopsis thaliana. Our results indicate that these strains may be promising agents for the biocontrol and promotion of plant growth and further study of the relevant bacteria will provide a useful reference for the development of microbial resources.

COLORS, AGES, AND METALLICITIES OF GALAXIES IN SIX NEARBY GALAXY CLUSTERS

  • Lee, Jong-Chul;Lee, Myung-Gyoon;Kim, Tae-Hyun
    • Journal of The Korean Astronomical Society
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    • v.41 no.5
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    • pp.109-119
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    • 2008
  • We present an optical-infrared photometric study of galaxies in six nearby clusters of galaxies at $z=0.041{\sim}0.098$ (A1436, A1773, A1809, A2048, A2142, and A2152). Using BV I photometry obtained at the Bohyunsan Optical Astronomical observatory and $JHK_S$ photometry extracted from the 2-Micron All-Sky Survey catalog, we investigate the colors of galaxies in the clusters. Using the (B - V) versus ($I\;-\;K_S$) color-color diagrams in comparison with the simple stellar population model, we estimate the ages and metallicities of bright early-type member galaxies. Early-type galaxies in each cluster show the color-magnitude relation. Ages and metallicities of early-type members show little dependence on their velocity dispersions. Mean ages of early-types in the clusters range from 3 Gyr to 20 Gyr, showing a large dispersion, and mean metallicities range from Z = 0.03 to 0.05 above the solar value, showing a negligible dispersion.

WASHINGTON CCD PHOTOMETRY OF THE OPEN CLUSTER NGC 1245

  • WEE SUN-OK;LEE MYUNG GYOON
    • Journal of The Korean Astronomical Society
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    • v.29 no.spc1
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    • pp.145-146
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    • 1996
  • We have estimated a metal abundance of [Fe/H]= -0.04 $\pm$ 0.05 dex, a reddening of E(B- V)= 0.28 mag, an age of 1.1 $\pm$ 0.1 Gyr, and a distance of 2.5 $\pm$ 0.2 kpc for NGC 1245 using the Washington filter system.

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WASHINGTON CCD PHOTOMETRY OF THE OLD OPEN CLUSTER TOMBAUGH 2

  • WEE SUN-OK;LEE MYUNG GYOON;GEISLER DOUG
    • Journal of The Korean Astronomical Society
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    • v.29 no.spc1
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    • pp.147-148
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    • 1996
  • We have estimated a metal abundance of [Fe/H]= -0.48 $\pm$ 0.14 dex, a reddening of E(B- V)= 0.30 mag, an age of 2.0 $\pm$ 0.4 Gyr, and a distance of 7.9 $\pm$ 0.8 kpc for Tombaugh 2 using the Washington filter system.

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Prevalence of Bacillus cereus Group in Rice and Distribution of Enterotoxin Genes

  • Jang, Ji-Hyun;Lee, No-A;Woo, Gun-Jo;Park, Jong-Hyun
    • Food Science and Biotechnology
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    • v.15 no.2
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    • pp.232-237
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    • 2006
  • Bacillus cereus group comprising B. cereus, B. thuringiensis, and B. mycoides was differentiated by polymerase chain reaction (PCR) and colony morphology. Prevalence of B. cereus group in rice and distribution of enterotoxin genes were determined as possible food poisoning agents. PCR using primers targeted for gyrB and cry genes could distinguish B. thuringiensis from B. cereus, and B. mycoides was differentiated by rhizoid morphological characteristics on nutrient agar. Among 136 rice and their processed products, prevalence of B. cereus group was 40%. B. cereus group consisted of 54 B. cereus, 11 B. thuringiensis, and 1 B. mycoides. Major isolates were B. cereus, with B. thuringiensis detected up to 10% among edible rice tested. Five enterotoxin genes, hbl, nhe, bceT, entFM, and cytK, were broadly distributed among B. cereus group, especially in B. cereus and B. thuringiensis. Prevalence of B. cereus group in rice and enterotoxin distribution suggest B. thuringiensis and B. cereus are toxigenic strain that should be controlled in rice and its products.

Molecular identification of Bacillus licheniformis isolates from Korean traditional fermented soybean by the multilocus phylogenetic analysis

  • Moon, Sung-Hyun;Hossain, Md Mukter;Oh, Yeonsu;Cho, Ho-Seong
    • Korean Journal of Veterinary Service
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    • v.39 no.1
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    • pp.1-6
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    • 2016
  • In this study, Bacillus licheniformis which has been used as probiotics was isolated from Korean traditional fermented soybean. A total of 69 strains were presumptively identified as B. licheniformis by phenotypic methods. Based on PCR amplification and 16S rRNA gene sequencing, the multilocus sequence typing of gyrA and rpoB, followed by phylogenetic analysis was performed. The isolates were distinctly differentiated and found to be closely related to B. amyloliquefaciens, B. subtilis, and B. aerius. The partial 16S rRNA gene sequences of those strains matched those of B. sonorensis (97%) and B. aerius (98%) in the phylogenetic tree. In contrast, multilocus phylogenetic analysis (MLPA) showed that only 61 (86.9%) out of 69 strains were B. licheniformis. The rest of those strains were found to be B. subtilis (5.8%), B. amyloliquefaciens (2.9%), and B. sonorensis (2.9%), respectively. Therefore, our results suggested that since the 16S rRNA gene sequencing alone was not sufficient to compare and discriminate closely related lineages of Bacillus spp., it was required to analyze the MLPA simultaneously to avoid any misleading phenotype-based grouping of these closely related species.

BOAO PHOTOMETRIC SURVEY OF GALACTIC OPEN CLUSTERS. III. CZERNIK 24 AND CZERNIK 27

  • Kim Sang-Chul;Park Hong-Soo;Sohn Sang-Mo Tony;Lee Myung-Gyoon;Park Byeong-Gon;Sung Hwan-Kyung;Ann Hong-Bae;Chun Moo-Young;Kim Seung-Lee;Jeon Young-Beom;Yuk In-Soo;Lee Sang- Hyun
    • Journal of The Korean Astronomical Society
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    • v.38 no.4
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    • pp.429-435
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    • 2005
  • We present BV CCD photometry for the open clusters Czernik 24 and Czernik 27. These clusters have never been studied before, and we provide, for the first time, the cluster parameters; reddening, distance, metallicity and age. Czernik 24 is an old open cluster with age $1.8{\pm}0.2Gyr$, metallicity $[Fe/H]=-0.41{\pm}0.15dex$, distance modulus $(m-M)_0=13.1{\pm}0.3mag$ ($d=4.1{\pm}0.5kpc$), and reddening $E(B-V)=0.54{\pm}0.12mag$. The parameters for Czernik 27 are estimated to be $age=0.63{\pm}0.07Gyr$, $[Fe/H]=-0.02{\pm}0.10dex$, $(m-M)_0=13.8{\pm}0.2mag$ ($d=5.8{\pm}0.5kpc$), and $E(B-V)=0.15{\pm}0.05mag$. The metallicity and distance values for Czernik 24 are consistent with the relation between the metallicity and the Galactocentric distance of other old open clusters. We find the metallicity gradient of 51 old open clusters including Czernik 24 to be ${\Delta}[Fe/H]/{\Delta}R_{gc}=-0.064 {\pm}0.009dex\;kpc^{-1}$.