• Reproductive and Developmental Biology
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• 제36권3호
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• pp.183-188
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• 2012

The bovine fatty acid binding protein 4 and 5 (FABP4 and 5) is a major positional and physiological candidate gene for the bovine marbling and carcass weight. The aim of this study was to evaluate the association between economic traits of Korean cattle (Hanwoo) and genetic variation in fatty acid binding protein 4 and 5 (FABP4 and 5) genes within carcass/meat quality traits and the before/after of fatting in breed Hanwoo. Here, we characterized the nucleotide polymorphism of FABP4 and 5 in 86 cattle. We were detected the variability of three types (GG, AG, and AA) by PCR, and economic traits were analyzed by the mixed regression model implemented in the ASReml program. As the result of statistical and supersonic analysis, FABP4 gene was highly showed significant effect (p<0.006) on marbling score (MS), in contrast FABP5 gene was lowed (p<0.084) on MS before fatting. But, FABP4 gene was highly showed significant effect (p<0.0054) on MS, in contrast FABP5 gene lowest (p<0.0899) on MS in the after of fatting. Compare to supersonic result before fatting in FABP4 gene, it was detected type GG: (p<7.18), AG: (p<8.50), and AA: (p<10.50) (n=50), showed type GG: (p<4.88), AG: (p<2.33), and AA: (p<0.00) after weed out (n=20). Futhermore, it was detected type GG: (p<9.30), AG: (p<7.95), and AA: (p<7.40) (n=50) before fatting in the FABP5 gene. It was shown type GG: (p<2.67), AG: (p<3.50), and AA: (p<5.00) after weed out (n=50). Our results indicate that FABP4 and 5 gene transcription is regulated by the environment of feeding and management, and suggest that feeding and management could be potential key in determining FABP4 and 5 genes transcription for carcass/meat quality traits in breed Hanwoo.

• 생명과학회지
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• 제30권5호
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• pp.411-419
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• 2020

GM 작물의 개발은 경제적 중요성을 갖게 되었고 상업적인 GM 작물을 재배하는 국가들은 1960년대 이후 지속적으로 증가하고 있다. 비록 GM 작물의 경작과 상업화는 경제적 중요성을 얻었지만, 여전히 non-GM 작물에 비해 그들의 농업적 특성을 평가할 필요가 있다. 본 연구는 유전공학에서 사용된 방법의 결과로 발생할 수 있는 의도하지 않은 문제 발생 여부를 확인하기 위해 내건성 유전자 CaMsrB2를 포함한 GM 쌀과 non-GM 쌀의 농업적 특성을 내건성 온실과 관개수답에서 평가했다. 관개수답에서는 GM벼와 non-GM벼의 모든 농업형질에서 유의미한 차이가 없었다. 그러나 내건성온실에서 수수와 수량에서 GM벼와 non-GM벼에서 유의미한 차이가 있었다. 따라서 본 연구 결과는 CaMsrB2 유전자를 함유한 GM벼가 내건성 조건에서 non-GM 쌀에 비해 경제적 가치가 우수하다는 것을 시사한다. 이 결과는 또한 CaMsrB2 유전자를 함유한 GM 벼는 가뭄에 취약한 지역에서 안정적으로 수량을 유지 하면서 재배 가능 하다.

• Asian-Australasian Journal of Animal Sciences
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• 제19권2호
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• pp.153-159
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• 2006

A 2,656 bp fragment of chicken ghrelin gene was cloned and SNPs were detected by PCR-RFLP and Allele Specific PCR (ASP) in 12 Chinese indigenous chicken breeds and a commercial chicken population. The results showed that there were 23 base variations and an amino acid change ($Gln{\rightarrow}Arg$) in cloned chicken ghrelin gene. Three SNPs were confirmed in 13 populations and associations between this gene and growth traits of Tibetan chicken (TC) and Recessive White chicken (RW) were investigated. The results of haplotype analysis revealed that 26 haplotype genotypes were composed of eight haplotypes. The results of $x^2$ tests indicated that there were significant differences between genotypes or haplotype genotype frequencies in some of the breeds or sexes at 0.05 or 0.01 levels. The results of ANOVA revealed that there were significant differences between genotypes or haplotype genotypes on some growth traits of TC and RW chicken breeds at 0.05 or 0.01 levels. Multiple comparisons showed that there were significant associations between genotype CT at site 71 and some growth traits of two chicken breeds and between genotype AG at site 1,215 and body weight at 16 wk of two chicken breeds, and there was a significant association between haplotype genotype CAA/CAG and body weight and shank girth at 16 wk of two chicken breeds.

• 대한치과교정학회지
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• 제44권2호
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• pp.96-102
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• 2014

Objective: A recent study suggested that rs6504340, a polymorphism within the homeobox B (HOXB) gene cluster, is associated with the susceptibility for malocclusions in Europeans. The resulting malocclusions require orthodontic treatment. The aim of this study was to investigate the association of rs6504340 and other dentition-implicated polymorphisms with dental and occlusal traits in Korean and Japanese populations. Methods: The study participants included 223 unrelated Koreans from the Busan area and 256 unrelated Japanese individuals from the Tokyo metropolitan area. DNA samples were extracted from saliva specimens. Genotyping for rs6504340 and four single nucleotide polymorphisms (SNPs) that have been shown to be associated with the timing of first tooth eruption and the number of teeth at 1 year of age (rs10506525, rs1956529, rs9674544, and rs8079702) was performed using TaqMan assays. The Index of Orthodontic Treatment Need (IOTN), overjet, overbite, arch length discrepancy, crown sizes, and length and width of the dental arches were measured. Spearman's correlation coefficients were calculated to evaluate relationships between rs6504340 and these dental/occlusal traits. Results: We evaluated the aesthetic components and dental health components of the IOTN in the Korean and Japanese populations and found that neither rs6504340 nor the other four SNPs showed any association with dental and occlusal traits in these East Asian populations. Conclusions: These negative results suggest that further research is needed to identify the genetic determinants of malocclusions in order to reach a consensus.

• Molecules and Cells
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• 제38권5호
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• pp.466-473
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• 2015

Over the last 30 years, Hanwoo has been selectively bred to improve economically important traits. Hanwoo is currently the representative Korean native beef cattle breed, and it is believed that it shared an ancestor with a Chinese breed, Yanbian cattle, until the last century. However, these two breeds have experienced different selection pressures during recent decades. Here, we whole-genome sequenced 10 animals each of Hanwoo and Yanbian cattle (20 total) using the Illumina HiSeq 2000 sequencer. A total of approximately 3.12 and 3.07 billion sequence reads were mapped to the bovine reference sequence assembly (UMD 3.1) at an average of approximately 10.71- and 10.53-fold coverage for Hanwoo and Yanbian cattle, respectively. A total of 17,936,399 single nucleotide polymorphisms (SNPs) were yielded, of which 22.3% were found to be novel. By annotating the SNPs, we further retrieved numerous nonsynonymous SNPs that may be associated with traits of interest in cattle. Furthermore, we performed whole-genome screening to detect signatures of selection throughout the genome. We located several promising selective sweeps that are potentially responsible for economically important traits in cattle; the PPP1R12A gene is an example of a gene that potentially affects intramuscular fat content. These discoveries provide valuable genomic information regarding potential genomic markers that could predict traits of interest for breeding programs of these cattle breeds.

• 생명과학회지
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• 제27권7호
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• pp.760-766
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• 2017

본 연구는 Lysophospholipase I (LYPLA1) 유전자의 SNP 마커인 rs385360448 g.23655332G>C의 유전자형이 제주도 한우와 제주흑한우(한우${\times}$제주흑우, JCC) 집단의 도체형질에 미치는 영향을 시험하였다. 한우 거세우 집단에서 LYPLA1 rs385360448 G/-를 보유한 도체는 C/C 동형접합에 비해 유의적으로 높은 수준의 근내지방도(MARB)와 조직감지수(TI)를 나타내었다(p<0.05). 반면, LYPLA1 유전자형은 도체중, 등지방두께, 등심단면적, 육색, 지방색에서는 유의적인 차이를 보이지 않았다(p>0.05). JCC 거세우에서는 LYPLA1 G/- 도체에서 C/C 동형접합에 비해 등심단면적(EMA)의 수준이 유의적으로 더 높았다(p<0.05). 이번 연구의 결과들은 LYPLA1 유전자형이 소의 등심에서 인지질 대사를 통해 근내지방도와 조직감의 수준과 등심단면적의 수준을 변화시킬 수 있음을 보여주고 있다. 이러한 결과들은 LYPLA1 유전자형이 한우와 제주흑우-유래의 산업화축군에서 도체형질을 개선할 수 있는 유전자 마커로써의 기능을 수행할 수 있을 것으로 기대된다.

• Molecules and Cells
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• 제25권3호
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• pp.417-427
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• 2008

Comparison of maps and QTLs between populations may provide us with a better understanding of molecular maps and the inheritance of traits. We developed and used two reciprocal $BC_1F_1$ populations, IP/DS//IP and IP/DS//DS, for QTL analysis. DS (Dasanbyeo) is a Korean tongil-type cultivar (derived from an indica x japonica cross and similar to indica in its genetic make-up) and IP (Ilpumbyeo) is a Korean japonica cultivar. We constructed two molecular linkage maps corresponding to each backcross population using 196 markers for each map. The length of each chromosome was longer in the IP/DS//IP population than in the IP/DS//DS population, indicating that more recombinants were produced in the IP/DS//IP population. Distorted segregation was observed for 44 and 19 marker loci for the IP/DS//IP and IP/DS//DS populations, respectively; these were mostly skewed in favor of the indica alleles. A total of 36 main effect QTLs (M-QTLs) and 15 digenic epistatic interactions (E-QTLs) were detected for the seven traits investigated. The phenotypic variation explained (PVE) by M-QTLs ranged from 3.4% to 88.2%. Total PVE of the M-QTLs for each trait was significantly higher than that of the E-QTLs. The total number of M-QTLs identified in the IP/DS//IP population was higher than in the IP/DS//DS population. However, the total PVE by the M-QTLs and E-QTLs together for each trait was similar in the two populations, suggesting that the two $BC_1F_1$ populations are equally useful for QTL analysis. Maps and QTLs in the two populations were compared. Eleven new QTLs were identified for SN, SF, GL, and GW in this study, and they will be valuable in marker-assisted selection, particularly for improving grain traits in tongil-type varieties.

• 농업생명과학연구
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• 제45권6호
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• pp.109-114
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• 2011

본 논문은 한우 거세우의 각 월령별 체중과 18개월 체척, 도체형질에 대하여 출생지, 후대검정차수, 측정일령, 도축일, 도축일령등의 환경효과가 영향을 미치는지 알아 보기위하여 실시하였다. 이 연구에 사용된 자료는 농협중앙회 한우개량사업소에서 2004년부터 2008년까지 후대 검정한 38차에서 47차까지의 거 세우 1,838두의 성장형질과 도체형질 자료를 이용하였고, 성장형질은 18개월령 체척자료와 6개월, 12개월, 18개월, 24개월 체중을, 도체형질은 24개월령 도축성적을 이용하였다. 각 형질에 대한 환경효과 분석을 위해 각 월령별 체중에 대해서는 고정효과를 출생지, 후대검정차수로 하였고 공변량을 측정일령으로 하였다. 도체형질은 도축일을 고정효과로 도축일령을 공변량으로 하였다. 18개월 체척의 경우는 고정효과를 출생지, 후대검정차수로 하였고, 공변량을 18개월 체척측정일령으로 하였다. 분석결과 24개월 체중에서는 출생지 효과가 유의성이 낮은 것으로 나타났다. 도체형질인 도체중, 등심단면적, 육량지수, 등지방 두께는 도축일에 따른 유의적인 차이가 존재하는 것으로 나타났지만 도축일령에 따른 유의적인 차이는 없었다. 근내지방도에 대해서는 도축일령과 도축일 모두 영향을 미치는 것으로 나타났다. 또한 체척형질은 흉심, 고장폭, 흉위에서 출생지 효과는 영향이 없는 것으로 나타났다. 따라서 본 연구결과는 한우 유전평가 모형 설정 시 활용 가능한 것으로 예상된다.

• Asian-Australasian Journal of Animal Sciences
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• 제32권7호
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• pp.913-921
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• 2019

Objective: The objectives of this study were to compare identified informative regions through two genome-wide association study (GWAS) approaches and determine the accuracy and bias of the direct genomic value (DGV) for milk production traits in Korean Holstein cattle, using two genomic prediction approaches: single-step genomic best linear unbiased prediction (ss-GBLUP) and Bayesian Bayes-B. Methods: Records on production traits such as adjusted 305-day milk (MY305), fat (FY305), and protein (PY305) yields were collected from 265,271 first parity cows. After quality control, 50,765 single-nucleotide polymorphic genotypes were available for analysis. In GWAS for ss-GBLUP (ssGWAS) and Bayes-B (BayesGWAS), the proportion of genetic variance for each 1-Mb genomic window was calculated and used to identify informative genomic regions. Accuracy of the DGV was estimated by a five-fold cross-validation with random clustering. As a measure of accuracy for DGV, we also assessed the correlation between DGV and deregressed-estimated breeding value (DEBV). The bias of DGV for each method was obtained by determining regression coefficients. Results: A total of nine and five significant windows (1 Mb) were identified for MY305 using ssGWAS and BayesGWAS, respectively. Using ssGWAS and BayesGWAS, we also detected multiple significant regions for FY305 (12 and 7) and PY305 (14 and 2), respectively. Both single-step DGV and Bayes DGV also showed somewhat moderate accuracy ranges for MY305 (0.32 to 0.34), FY305 (0.37 to 0.39), and PY305 (0.35 to 0.36) traits, respectively. The mean biases of DGVs determined using the single-step and Bayesian methods were $1.50{\pm}0.21$ and $1.18{\pm}0.26$ for MY305, $1.75{\pm}0.33$ and $1.14{\pm}0.20$ for FY305, and $1.59{\pm}0.20$ and $1.14{\pm}0.15$ for PY305, respectively. Conclusion: From the bias perspective, we believe that genomic selection based on the application of Bayesian approaches would be more suitable than application of ss-GBLUP in Korean Holstein populations.

• 농업생명과학연구
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• 제53권4호
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• pp.55-59
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• 2019

한우는 도체형질의 개량으로 높은 개량의 효과를 보이고 있다. 특히 한우의 육질은 등급이 높을수록 식감과 맛이 좋다고 알려져 있기 때문에 가격을 결정하는 핵심적인 요소이다. 식육에서 맛을 결정하는 여러 가지 요인 중 크게 작용하는 부분 중 하나가 풍미이다. 식육의 풍미는 열처리를 통해 발현되고 풍미에 중요하게 영향을 미치는 성분은 지방, 탄수화물 및 수용성 비단백질 물질들이다. 이에 본 연구는 풍미에 영향을 미치는 지방산의 특성을 알아보고 높은 가치의 식육 생산을 위한 개량방향을 제시하기 위해 한우 후대검정우 373두의 등심을 채취하여 지방산과 도체형질의 특성을 알아보았다. 도체중, 배최장근단면적, 등지방두께, 근내지방도의 성적은 각각 383.73 kg, 83.88 ㎠, 10.91 mm, 3.89로 나타났고 한우 등심의 oleic acid (C18:1)와 Linolenic acid (C18:3)의 조성비율은 각각 48.08%와 0.11%로 나타났다. Oleic acid의 유전력은 0.726으로 추정되었고 배최장근단면적과 근내지방도와의 표현형 상관이 각각 0.105와 0.141로 추정되었다. 근내지방도와 배최장근단면적의 표현형은 Oleic acid와 정의 상관을 나타내고 있는 것으로 보아 이 두 형질의 개량은 불포화 지방산 함유량의 증가에도 영향을 미쳐 우수한 풍미를 가진 개체가 생산될 확률이 높아질 것이라고 사료된다.