• Title/Summary/Keyword: genetic system

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Genetic parameter analysis of reproductive traits in Large White pigs

  • Yu, Guanghui;Wang, Chuduan;Wang, Yuan
    • Animal Bioscience
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    • v.35 no.11
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    • pp.1649-1655
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    • 2022
  • Objective: The primary objective of this study was to determine the genetic parameters for reproductive traits among Large White pigs, including the following traits: total number born (TNB), number born alive (NBA), litter birth weight (LBW), average birth weight (ABW), gestation length (GL), age at first service (AFS) and age at first farrowing (AFF). Methods: The dataset consisted of 19,036 reproductive records from 4,986 sows, and a multi-trait animal model was used to estimate genetic variance components of seven reproductive traits. Results: The heritability estimates for these reproductive traits ranged from 0.09 to 0.26, with the highest heritability for GL and AFF, and the lowest heritability for NBA. The repeatabilities for TNB, NBA, LWB, ABW, and GL were ranged from 0.16 to 0.34. Genetic and phenotypic correlations ranged from -0.41 to 0.99, and -0.34 to 0.98, respectively. In particular, the correlations between TNB, NBA and LBW, between AFS and AFF, exhibited a strong positive correlation. Furthermore, for TNB, NBA, LBW, ABW, and GL, genetic correlations of the same trait between different parities were moderately to strongly correlated (0.32 to 0.97), and the correlations of adjacent parities were higher than those of nonadjacent parities. Conclusion: All the results in the present study can be used as a basis for the genetic assessment of the target population. In the formulation of dam line selection index, AFS or AFF can be considered to combine with TNB in a multiple trait swine breeding value estimation system. Moreover, breeders are encouraged to increase the proportion of sows at parity 3-5 and reinforce the management of sows at parity 1 and parity ≥8.

Genetic structure analysis of domestic companion dogs using high-density SNP chip

  • Gwang Hyeon Lee;Jae Don Oh;Hong Sik Kong
    • Journal of Animal Reproduction and Biotechnology
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    • v.39 no.2
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    • pp.138-144
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    • 2024
  • Background: As the number of households raising companion dogs increases, the pet genetic analysis market also continues to grow. However, most studies have focused on specific purposes or native breeds. This study aimed to collect genomic data through single nucleotide polymorphism (SNP) chip analysis of companion dogs in South Korea and perform genetic diversity analysis and SNP annotation. Methods: We collected samples from 95 dogs belonging to 26 breeds, including mixed breeds, in South Korea. The SNP genotypes were obtained for each sample using an AxiomTM Canine HD Array. Quality control (QC) was performed to enhance the accuracy of the analysis. A genetic diversity analysis was performed for each SNP. Results: QC initially selected SNPs, and after excluding non-diverse ones, 621,672 SNPs were identified. Genetic diversity analysis revealed minor allele frequencies, polymorphism information content, expected heterozygosity, and observed heterozygosity values of 0.220, 0.244, 0.301, and 0.261, respectively. The SNP annotation indicated that most variations had an uncertain or minimal impact on gene function. However, approximately 16,000 non-synonymous SNPs (nsSNPs) have been found to significantly alter gene function or affect exons by changing translated amino acids. Conclusions: This study obtained data on SNP genetic diversity and functional SNPs in companion dogs raised in South Korea. The results suggest that establishing an SNP set for individual identification could enable a gene-based registration system. Furthermore, identifying and researching nsSNPs related to behavior and diseases could improve dog care and prevent abandonment.

FSS Design System Using Genetic Algorithm and Characteristic Data Base (유전알고리즘과 특성 DB를 이용한 FSS 설계 시스템)

  • Lee Ji-Hong;Lee Fill-Youb;Seo Il-Song;Kim Geun-Hong
    • Journal of the Institute of Electronics Engineers of Korea TC
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    • v.43 no.4 s.346
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    • pp.58-66
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    • 2006
  • This paper proposes an FSS(Frequency Selective Surface) design system that automatically derives design parameters minimally specified by engineers. The proposed system derives optimal design parameters through theory of electromagnetic scattering on FSS, database implemented from real data obtained from practically manufactured FSS, and GA(Genetic Algorithm) for optimizing design parameters. The system, at the first step, searches the best matching FSS within preconstructed DB with given characteristics specified by operators, and then sets initial genes from the searched FSS parameters. GA iterates the optimization process until the system finds the FSS design parameters that matches the characteristics specified by operators. The theory for the electromagnetic scattering on FSS is verified by comparing the simulation results with real data obtained by measuring system composed of horn antenna and receiver. The process for manufacturing the FSS is also included in the paper.

Acceleration Optimization of a High-speed LCD Transfer Crane Using Finite Jerk (고속 LCD 이송 시스템의 진동감소를 위한 Finite Jerk 적용 가속도 최적화)

  • Chung W.J.;Song T.J.;Jung D.W.;Cho Y.D.;Bang D.J.;Yoon Y.M.
    • Proceedings of the Korean Society of Precision Engineering Conference
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    • 2005.06a
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    • pp.1906-1909
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    • 2005
  • This paper presents the acceleration optimization of a high-speed LCD (Liquid Crystal Display) transfer system for the minimization of vibration. To reduce vibration is one of key requirements for the dynamic control of a high-speed LCD transfer system. In this paper, the concept of finite jerk (the first derivative of acceleration) has been introduced for realizing input acceleration. The profile of finite jerk has been optimized using a genetic algorithm so that vibration effect can be minimized. In order to incorporate a genetic algorithm, the dynamic model of a LCD transfer system which is realized by using the $ADAMS^{(R){$ software has been linked to the simulation system constructed by the $MATLAB^{(R)}$. The simulation results illustrated that the duration of finite jerk can be optimized so as to minimize the magnitude of vibration. It has been also shown that the acceleration optimization with finite jerk can make the high-speed motion of a LCD transfer system result in low vibration, compared with the conventional motion control with trapezoidal velocity profile.

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Development of Traffic Prediction and Optimal Traffic Control System for Highway based on Cell Transmission Model in Cloud Environment (Cell Transmission Model 시뮬레이션을 기반으로 한 클라우드 환경 아래에서의 고속도로 교통 예측 및 최적 제어 시스템 개발)

  • Tak, Se-hyun;Yeo, Hwasoo
    • The Journal of The Korea Institute of Intelligent Transport Systems
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    • v.15 no.4
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    • pp.68-80
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    • 2016
  • This study proposes the traffic prediction and optimal traffic control system based on cell transmission model and genetic algorithm in cloud environment. The proposed prediction and control system consists of four parts. 1) Data preprocessing module detects and imputes the corrupted data and missing data points. 2) Data-driven traffic prediction module predicts the future traffic state using Multi-level K-Nearest Neighbor (MK-NN) Algorithm with stored historical data in SQL database. 3) Online traffic simulation module simulates the future traffic state in various situations including accident, road work, and extreme weather condition with predicted traffic data by MK-NN. 4) Optimal road control module produces the control strategy for large road network with cell transmission model and genetic algorithm. The results show that proposed system can effectively reduce the Vehicle Hours Traveled upto 60%.

3D BIM-based Building Energy Efficiency Solution for Carbon Emission Reduction (탄소저감을 위한 3D BIM 기반 건물 에너지 효율화 방안)

  • Lee, Dong Hwan;Kwon, Kee Jung;Shin, Ju Ho;Park, Seunghee
    • KSCE Journal of Civil and Environmental Engineering Research
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    • v.33 no.3
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    • pp.1235-1242
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    • 2013
  • This study deals with the BIM (Building Information Modeling)-based energy performance analysis implemented in EnergyPlus. The BIM model constructed at Revit is updated at Design Builder, adding HVAC models and converted compatibly with the EnergyPlus. We can obtain the input values about HVAC system and building environment such as HVAC system efficient, the number of air changes and energy consumption of equipment on applying GAs (Genetic algorithms). After modification about HVAC system, Optimization about HVAC system energy consumption can be analyzed. In order to maximize the building energy performance, a genetic algorithm (GA)-based optimization technique is applied to the modified HVAC models. Throughout the proposed building energy simulation, finally, the best optimized HVAC control schedule for the target building can be obtained in the form of "supply air temperature schedule". Throughout the supply air temperature schedule is applied to energy performance simulation, we obtained energy saving effect result on simulation.

System Trading using Case-based Reasoning based on Absolute Similarity Threshold and Genetic Algorithm (절대 유사 임계값 기반 사례기반추론과 유전자 알고리즘을 활용한 시스템 트레이딩)

  • Han, Hyun-Woong;Ahn, Hyun-Chul
    • The Journal of Information Systems
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    • v.26 no.3
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    • pp.63-90
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    • 2017
  • Purpose This study proposes a novel system trading model using case-based reasoning (CBR) based on absolute similarity threshold. The proposed model is designed to optimize the absolute similarity threshold, feature selection, and instance selection of CBR by using genetic algorithm (GA). With these mechanisms, it enables us to yield higher returns from stock market trading. Design/Methodology/Approach The proposed CBR model uses the absolute similarity threshold varying from 0 to 1, which serves as a criterion for selecting appropriate neighbors in the nearest neighbor (NN) algorithm. Since it determines the nearest neighbors on an absolute basis, it fails to select the appropriate neighbors from time to time. In system trading, it is interpreted as the signal of 'hold'. That is, the system trading model proposed in this study makes trading decisions such as 'buy' or 'sell' only if the model produces a clear signal for stock market prediction. Also, in order to improve the prediction accuracy and the rate of return, the proposed model adopts optimal feature selection and instance selection, which are known to be very effective in enhancing the performance of CBR. To validate the usefulness of the proposed model, we applied it to the index trading of KOSPI200 from 2009 to 2016. Findings Experimental results showed that the proposed model with optimal feature or instance selection could yield higher returns compared to the benchmark as well as the various comparison models (including logistic regression, multiple discriminant analysis, artificial neural network, support vector machine, and traditional CBR). In particular, the proposed model with optimal instance selection showed the best rate of return among all the models. This implies that the application of CBR with the absolute similarity threshold as well as the optimal instance selection may be effective in system trading from the perspective of returns.

Development of Dynamic Balancing Techniques of a Rotor System Using Genetic Algorithm (유전자 알고리즘을 적용한 로터 시스템의 동적 밸런싱 기법 개발)

  • Kwon, Hyuck-Ju;Yu, Young-Hyun;Jung, Sung-Nam;Yun, Chul-Yong
    • Journal of the Korean Society for Aeronautical & Space Sciences
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    • v.38 no.12
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    • pp.1162-1169
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    • 2010
  • The dynamic balancing of a rotor system is needed to alleviate the imbalances originating from various sources encountered during blade manufacturing processes and environmental factors. This work aims at developing a comprehensive analysis system which consists of cumulative module of test D/B and selection of optimal control parameters. This system can be used for the dynamic balancing of helicopter rotors based on tracking results from the whirl tower test. For simplicity of the analysis, a linear relation is assumed between the balancing input parameters and the blade track responses leading to influence coefficients and thereby the rotor system identification is made. In addition, the balancing parameters of the individual blades are sought using the genetic algorithm and the effectiveness of the proposed method is demonstrated in comparison with the test results.

Development of Optimal Urban Runoff System : II. Development of Decision Making Model for Optimal Control of Rainfal1-Runoff System in Urban Area (최적 도시유출시스템의 개발 : II. 도시유역의 최적유출시스템 제어를 위한 의사결정모형의 개발)

  • Lee, Jung-Ho;Kim, Joong-Hoon;Kim, Hung-Soo;Jo, Deok-Jun;Kim, Eung-Seok
    • Journal of Korea Water Resources Association
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    • v.37 no.3
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    • pp.207-217
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    • 2004
  • Our government is interested in the rehabilitation for the old sewer rather than the construction of a new sewer system. However, the research work on the sewer rehabilitation is not sufficient as much as the interest on the rehabilitation is increased. There are some research works for the determination of rehabilitation time by the genetic algorithm in Korea and foreign countries. However, the previous studies have considered the simple elements for the determination of the rehabilitation time and so the complex decision-making according to the degree of sewer superannuation has not been performed. Therefore, in this study, we estimate the capacity and Ⅰ/Ⅰ of sewer and determine the priority of the optimal rehabilitation for each outfall within the draining system. Also we develop the optimal rehabilitation decision making system for the cost estimation of optimal rehabilitation using the genetic algorithm.

Enzymatic Hydrolysis of Crystalline Chitin in an Agitated Bead Reaction System and Its Reaction Characteristics

  • Lee, Yong-Hyun;Bae, Young-Ki;Jeong, Eui-Jun
    • Journal of Microbiology and Biotechnology
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    • v.6 no.6
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    • pp.432-438
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    • 1996
  • Native crystalline chitin was hydrolyzed in an agitated bead reaction system using crude chitinase excreted from Aspergillus fumigatus JC-19. The reaction was enhanced significantly, and the concentration and yield of reducing sugar after 48 hours were measured to be 35.42 g/I (w/v) and 0.64, respectively, around 1.86 times higher than those of the conventional system that was carried out without glass beads. The effect of reaction conditions, such as the amounts of chitin, chitinase and glass beads, and the size of glass bead, were examined. Ball milled chitin was also hydrolyzed in the agitated bead reaction system, the conversion yield and reaction rate of ball milled chitin for 24 hours increased up to 0.87 and 48.02 g/I, respectively. Chitinase showed relatively high stability in the agitated bead reaction system, particularly in the presence of enzyme stabilizer, $Ca^{++}$, which played a critical role in preventing the deactivation of chitinase by the physical impact of glass beads. The variations of the structural features of chitin during the reaction were followed by SEM and X-ray diffraction, and the enhanced hydrolysis reaction was caused by both the fragmentation of chitin particles and the destruction of the crystalline structure owing to the synergic effects of the attrition of glass beads and the hydrolytic action of chitinase.

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