• 제목/요약/키워드: genetic difference

검색결과 866건 처리시간 0.029초

Air-Borne Selection in Micro-Genetic Algorithms for Combinatorial Optimization

  • Kim, Yunyoung;Masahiro Toyosada;Koji Gotoh;Park, Jewoong
    • 제어로봇시스템학회:학술대회논문집
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    • 제어로봇시스템학회 2001년도 ICCAS
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    • pp.106.4-106
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    • 2001
  • The current research field to find near-optimum solutions explores in a small population, which is coined as Micro-Genetic Algorithms (${\mu}$GAs), with some genetic operators. Just as in the Simple-Genetic Algorithms (SGAs), the ${\mu}$GAs work with encoding population and are implemented serially. The major difference between SGAs and ${\mu}$GAs is how to make reproductive plan for more better searching strategy due to the population choice. This paper is conducted to implement ${\mu}$GAs in order to achieve fast searching for more better evolution and associated cost evaluation in global solution space. To achieve this implementation, the Air-Borne Selection (ABS) for a new reproductive plan is developed as new strategic conception for ${\mu}$GAs. In this paper, it is shown that the ${\mu}$GAs implementation reaches a near-optimal region much earlier than the SGAs implementation. The superior ...

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Genetic Distance Study among Deoni Breed of Cattle Using Random Amplified DNA Markers

  • Appannavar, M.M.;Govindaiah, M.G.;Ramesha, K.P.
    • Asian-Australasian Journal of Animal Sciences
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    • 제16권3호
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    • pp.315-319
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    • 2003
  • Random amplified polymorphic DNA (RAPD) analysis was done with 19 oligonucleotide primers to study genetic similarities and divergence among different types of Deoni breed of cattle viz., Balankya, Wannera and Waghya. Six random primers produced low to high numbers of polymorphic bands between pooled DNA of different Deoni types. Of the 48 RAPD markers obtained 33 were common to all Deoni types, 3 were individual specific and 12 were polymorphic for different Deoni types. The mean average percentage difference values among Deoni types showed that Balankya and Wannera had less genetic divergence when compared to Waghya.

Determination of Phylogenetic Relationships of Turkish Native Cattle Breeds with Other Cattle Breeds Using Mitochondrial DNA D-loop Sequence Polymorphism

  • Ozdemir, Memis;Dogru, Unsal
    • Asian-Australasian Journal of Animal Sciences
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    • 제22권7호
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    • pp.955-961
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    • 2009
  • The aim of this study was to determine the specific polymorphic sites in cattle breeds and inter- and interbreed genetic variation among breeds and to develop a databank of Turkish native cattle mtDNA using sequence analysis. The entire D-loop region was analyzed based on DNA sequences in Turkish Grey, East Anatolian Red, South Anatolian Red, and Anatolian Black native breeds. In total, 68 nucleotide differences were observed at 26 different sites. The variable positions consisted of 22 transitions, two transversions, and two insertions, but no deletions. Haplotype number, haplotype diversity, nucleotide diversity, and mean number of pairwise difference values were found to be 17, 0.993, 0.00478, and 4.275, respectively. In addition, a phylogeny was developed by comparison among cattle populations for which the entire D-loop sequence was available. A high level of genetic variation was observed within and among the native cattle breeds.

Evolutionary Study on the Dark Chub (Zacco temmincki) IV. Genetic Variation, Morphology and Artificial Hybridization (갈겨니(Zacco temmincki)의 진화에 관한 연구 IV. 유전적 변이, 형태비교 및 인공교배)

  • 양서영;민미숙
    • The Korean Journal of Zoology
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    • 제30권4호
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    • pp.417-431
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    • 1987
  • Isozyme analysis, morphometric comparison, and artificial hybridization test wereperformed to elucidate the patterns of genic variation, morphological differentiation, genetic incompatibility, and a probable path in speciation between two MDH allelotypes (MM type and MS type) of the Dark Chub Zacco temmincki, a fresh water fish inhabiting in Korean waters. The degree of genic variation of MS type(HD=.023, HG=.021) was twofold higher than that of MM type (HD=.013, HG=.014) but both allelotypes were far less than the average genic variation of fresh water Bish in general. The average genetic similarities among 7 populations of MM type and 6 Populations of MS type were S=.947 and S=.966 respectively, whereas the value between two allelotypes was S=.853. Presumed divergent time of two allelotypes was estimated to be about 700 thousand years ago. Discriminant function analysis based on 18 morphometric characters of 302 specimens representing 12 populations revealed no morphological difference between two allelotypes. Artificial hybridization test indicates that there is an obvious genetic incogpatibility between two allelotypes and therefore it is assumed that isolating mechanism is completed.

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A Study on the Gait Optimization of a Biped Robot (이족보행로봇의 최적 걸음새에 관한 연구)

  • 공정식;노경곤;김진걸
    • Journal of the Korean Society for Precision Engineering
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    • 제21권7호
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    • pp.115-123
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    • 2004
  • This paper deals with the gait optimization of via points on biped robot. ZMP(Zero Moment point) is the most important index in a biped robot's dynamic walking stability. To stable walking of a biped robot, leg's trajectory and a desired ZMP trajectory is required, balancing motion is solved by FDM(Finite Difference Method). In this paper, optimal index is defined to dynamically stable walking of a biped robot, and genetic algorithm is applied to optimize gait trajectory and balancing motion of a biped robot. By genetic algorithm, the index of walking parameter is efficiently optimized, and dynamic walking stability is verified by ZMP verification equation. Genetic algorithm is only applied to balancing motion, and is totally applied to whole trajectory. All of the suggested motions of biped robot are investigated by simulations and verified through the real implementation.

Genetic Differences and Variation of Ascidians, Halocynthia roretzi von Drasche and H. hilgendorfi Oka Identified by PCR Analysis

  • Yoon, Jong-Man;Kim, Jong-Yeon
    • Development and Reproduction
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    • 제15권4호
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    • pp.359-364
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    • 2011
  • The seven selected primers OPA-02, OPA-04, OPA-18, OPD-07, OPD-08, OPD-15 and OPD-16 were used to generate unique shared loci to each species and shared loci by the two species. The hierarchical dendrogram indicates three main branches: cluster 1 (RORETZI 01~RORETZI 11) and cluster 2 (HILGENDORF 12~HILGENDORF 22) from two geographic populations of ascidians, Halocynthia roretzi and H. hilgendorfi. The shortest genetic distance displaying significant molecular difference was between individuals' HILGENDORF no. 14~HILGENDORF no. 19 (genetic distance =0.008). Ultimately, individual no. 02 of the RORETZI ascidian was most distantly related to HILGENDORF no. 21 (genetic distance=0.781). These results demonstrate that the H. roretzi population is genetically different from the H. hilgendorfi population. From what has been said above, the potential of PCR analysis to identify diagnostic markers for the identification of two ascidian populations has been demonstrated. Generally speaking, using a variety of decamer primers, this PCR method has been applied to identify specific markers particular to line, species and geographical population, as well as genetic diversity/polymorphism in diverse species of organisms.

Genetic Distances and Variations of Three Geographic Hairtail Populations Identified by PCR Analysis

  • Yoon, Jong-Man
    • Development and Reproduction
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    • 제18권3호
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    • pp.167-172
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    • 2014
  • In the present study, muscle tissues were obtained separately from individuals from Atlantic hairtail population (AHP), Gunsan hairtail population (GHP) and Chinese hairtail population (CHP), respectively. The seven decamer primers were used to generate the shared loci, specific, unique shared loci to each population and shared loci by the three hairtail populations. Here, averagely, a decamer primer generated 64.7 amplified products per primer in the AHP population, 55.7 in GHP population and 56.4 in CHP population. The number of unique shared loci to each population and number of shared loci by the three populations generated by genetic analysis using 7 decamer primers in AHP, GHP and CHP population. 119 unique shared loci to each population, with an average of 17 per primer, were observed in the AHP population, and 28 loci, with an average of 4 per primer, were observed in the CHP population. The hierarchical dendrogram point out three main branches: cluster 1 (ATLANTIC 01 ~ ATLANTIC 07), cluster 2 (GUNSAN 08 ~ GUNSAN 14) and cluster 3 (CHINESE 15 ~ CHINESE 21). The shortest genetic distance displaying significant molecular difference was between individuals' CHINESE no. 16 and CHINESE no. 18 (0.045). In the long run, individual no. 01 of the AHP population was most distantly related to CHINESE no. 19 (genetic distance = 0.430). Consequently, PCR analysis generated on the genetic data displayed that the geographic AHP population was widely separated from CHP population, while individuals of CHP population were fairly closely related to those of GHP population.

Maternal and Direct Genetic Parameters for Production Traits and Maternal Correlations among Production and Feed Efficiency Traits in Duroc Pigs

  • Hoque, M.A.;Kadowaki, H.;Shibata, T.;Suzuki, K.
    • Asian-Australasian Journal of Animal Sciences
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    • 제21권7호
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    • pp.961-966
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    • 2008
  • Direct and maternal genetic parameters for production traits in 1,642 pigs and maternal genetic correlations among production (1,642 pigs) and feed efficiency (380 boars) traits were estimated in 7 generations of a Duroc population. Traits studied were daily gain (DG), intramuscular fat (IMF), loineye area (LEA), backfat thickness (BF), daily feed intake (FI), feed conversion ratio (FCR) and residual feed intake (RFI). The RFI was calculated as the difference between actual and predicted feed intake. The predicted feed intake was estimated by adjusting the initial test weight, DG and BF. Data for production traits were analyzed using four alternative animal models (including direct, direct+maternal permanent environmental, or direct+maternal genetic+maternal permanent environmental effects). Direct heritability estimates from the model including direct and all maternal effects were $0.41{\pm}0.04$ for DG, $0.27{\pm}0.04$ for IMF, $0.52{\pm}0.06$ for LEA and $0.64{\pm}0.04$ for BF. Estimated maternal heritabilities ranged from $0.04{\pm}0.04$ to $0.15{\pm}0.05$ for production traits. Antagonistic relationships were observed between direct and maternal genetic effects ($r_{am}$) for LEA (-0.21). Maternal genetic correlations of feed efficiency traits with FI ($r_g$ of FI with FCR and RFI were $0.73{\pm}0.06$ and $0.90{\pm}0.05$, respectively) and LEA (rg of LEA with FCR and RFI were $-0.48{\pm}0.05$ to $-0.61{\pm}0.05$, respectively) were favorable. The estimated moderate genetic correlations between direct and maternal genetic effects for IMF and LEA indicated that maternal effects has an important role in these traits, and should be accounted for in the genetic evaluation system.

Post-Thaw Cryosurvival of Bovine Embryos Produced In Vitro and In Vivo after Controlled Freezing

  • Cho, Sang-Rae;Choi, Sun-Ho;Choe, Chang-Yong;Lee, Poong-Yeon;Son, Jun-Kyu;Kim, Jae-Bum;Kim, Sung-Jae;Kim, Hyun-Jong;Shin, Seung-Oh;Son, Dong-Soo
    • Journal of Embryo Transfer
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    • 제24권4호
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    • pp.253-257
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    • 2009
  • To enhance the embryo preservation technology and better application of embryo transfer technique to the field (dairy science or animal reproduction. etc.), we examined the viabilities of bovine embryos produced in vitro and in vivo after cryopreservation according to their developmental stage and thawing temperature. Bovine embryos from in vivo/vitro fertilization (Hanwoo) were examined at day 7, 8, and 9. Survival rates and total cell numbers of in vivo fertilized embryos were as follows: morulae 68.8% and $67\;{\pm}\;6.0$; blastocysts 80.5% and $120\;{\pm}\;10$; expanded blastocysts 77.4% and $138\;{\pm}\;9.7$, respectively. Rates of embryo development for blastocysts and expanded blastocysts after thawing were significantly higher than that of morula stage embryos (p<0.05). While survival rates of in vitro fertilized embryos according to developmental stage showed no significant difference among groups (morula 67.9%; blastocyst 74.3%; and expanded blastocyst 79.4%), total cell numbers were significantly lower than those of other groups (morula $64\;{\pm}\;5.9$; blastocyst $116\;{\pm}\;8.7$; and expanded blastocyst $135\;{\pm}\;9.1$) For the viability according to thawing temperature, survival rate was higher in $37^{\circ}C$.

Growth Characteristics of 100 Open-pollinated Families in an Early-age Test of Agathis loranthifolia in West Java, Indonesia

  • Kang, Kyu-Suk;Cappa, Eduardo P.;Hwang, Jae-Hong
    • Journal of Korean Society of Forest Science
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    • 제99권2호
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    • pp.213-219
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    • 2010
  • Early results from a field trail of Agathis loranthifolia are reported from a progeny test of 100 open-pollinated families in west Java, Indonesia. The average of height and diameter at root collar (DRC) was 40.18 cm and 0.52 cm at age 15 months. Family survival rate ranged from 86.5% at age 10 months to 81.7% at age 15 months. Family means of 10 best and 10 poorest families for each trait indicated that there was a large difference of growth performances among individual families. For height and DRC growth, the poorest groups had averages of 33.98 cm and 0.43 mm while the averages of the best groups were 47.35 cm and 0.62 mm at age 15 months as a difference of 39.36% and 43.65%, respectively. Differences between the best group and the test population mean, which is the selection differential, were implying that genetic gain from selection for the improvement of height and DRC growth would be achieved. The family variances of DRC and height were relatively small compared to replicate and residual variances. Family heritabilities for both studied traits were fluctuated, and the genetic coefficients of variation for DRC and height at age of 15 months were 7.19% and 5.22%, respectively.