• Journal of Microbiology and Biotechnology
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• 제18권7호
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• pp.1235-1244
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• 2008

Indole-3-acetic acid (IAA) is produced commonly by plants and many bacteria, however, little is known about the genetic basis involving the key enzymes of IAA biosynthetic pathways from Bacillus spp. IAA intermediates from the Gram-positive spore-forming bacterium Paenibacillus polymyxa E681 were investigated, which showed the existence of only an indole-3-pyruvic acid (IPA) pathway for IAA biosynthesis from the bacterium. Four open reading frames (ORFs) encoding indole-3-pyruvate decarboxylase-like proteins and putative indole-3-pyruvate decarboxylase (IPDC), a key enzyme in the IPA synthetic pathway, were found on the genome sequence database of P. polymyxa and cloned in Escherichia coli DH5$\alpha$. One of the ORFs, PP2_01257, was assigned as probable indole-3-pyruvate decarboxylase. The ORF consisted of 1,743 nucleotides encoding 581 amino acids with a deduced molecular mass of 63,380 Da. Alignment studies of the deduced amino acid sequence of the ORF with known IPDC sequences revealed conservation of several amino acids in PP2_01257, essential for substrate and cofactor binding. Recombinant protein, gene product of the ORF PP2_01257 from P. polymyxa E681, was expressed in E. coli BL21 (DE3) as a glutathione S-transferase (GST)-fusion protein and purified to homogeneity using affinity chromatography. The molecular mass of the purified enzyme showed about 63 kDa, corresponding closely to the expected molecular mass of IPDC. The indole-3-pyruvate decarboxylase activity of the recombinant protein, detected by HPLC, using IPA substrate in the enzyme reaction confirmed the identity and functionality of the enzyme IPDC from the E681 strain.

• Journal of Plant Biotechnology
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• 제37권4호
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• pp.567-573
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• 2010

To ascertain the effect of over-expressed maize calreticulin in tomato plant on tobamovirus movement in addition to validating potentiality of the gene (ZmCRT) as a means for the virus-resistance resource, four ZmCRT-expressing homozygous lines were generated from the T0 plants as using an Agrobacterium-mediated transformation, nucleic acid analyses, and a conventional breeding method. Of them, a line was subjected to the bioassay for tolerances to tobacco mosaic virus-U1 (TMV-U1) and tomato mosaic virus (ToMV) followed by RT-PCR and a chlorophyll fluorescence quenching analyses. Both transgenic plants transcribing ZmCRT and wild-type plants showed no symptom by 20 days after viruses inoculation, however the photosystem II quantum yield parameter measured from the upper leaves of ToMV-inoculated plants revealed that ZmCRT transgenic plants have higher photosynthetic ability than wild-type ones at that time, which indirectly implies that over-expressed ZmCRT product acts as a barrier to the cell-to-cell and/or systemic movement of ToMV. Moreover, ZmCRT transgenic plants showed remarkably longer shoot length than wild-type ones in 40 days after TMV-U1 or ToMV inoculation each, which might be resulted from higher photosynthetic ability during the phase not yet showing any external symptoms. Collectively, over-expressed ZmCRT protein in tomato plants is able to interrupt the systemic movement of infected TMV-U1 and ToMV even though not perfect.

• 한국자원식물학회:학술대회논문집
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• 한국자원식물학회 2019년도 춘계학술대회
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• pp.48-48
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• 2019

본 연구는 대한민국 매실나무 (207점)와 살구나무 (7점) 열매의 특성평가를 위하여 개체별 과피 및 과육의 착색정도를 조사하였다. 매실나무 열매의 착색상태는 아주 약함이 65점 (31.4%)으로 가장 많았으며, 다음으로 약함 (57점, 27.5%), 아주 짙음 (56점, 27.1%), 중간 (19점, 9.2%), 짙음 (10점, 4.8%)이었다. 살구나무 열매의 착색상태는 아주 짙음이 3점(42.8%)으로 가장 많았고, 다음으로 아주 약함 (2점, 28.6%), 약함과 짙음 (각각 1점, 14.3%)이었다. 매실나무 열매의 착색부위는 적음이 105점 (50.7%)으로 가장 많았으며, 다음으로 중간 (65점, 31.4%), 아주 적음(32점, 15.5%), 많음 (5점, 2.4%)이었다. 살구나무 열매의 착색부위는 아주 많음이 5점 (71.4%)으로 가장 많았고, 다음으로 중간 및 많음 (각각 1점, 14.3%)이었다. 매실나무 과육의 빛깔은 백록색이 103점 (49.8%)으로 가장 많았으며, 다음으로 연등색 (77점, 37.2%), 등색 (25점, 12.0%), 유백색 및 암등색 (각각 1점, 0.5%)이었다. 살구나무 과육의 빛깔은 등색이 4점 (57.1%)으로 가장 많았고, 다음으로 연등색 (2점, 28.6%), 백록색 (1점, 14.3%)이었다.

• 한국자원식물학회:학술대회논문집
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• 한국자원식물학회 2019년도 춘계학술대회
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• pp.58-58
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• 2019

덕항산 산림유전자원보호구역(337ha)은 강원도 삼척시 신기면에 위치하며, 남한에서 유일하게 해발고도 1,000m에 가까운 고산지대에 발달한 카르스트지형을 가지고 있다. 본 연구는 석회암지대의 식생현황을 제공하여 석회석 광산 채굴 등 황폐화가 진행되고 있는 석회암지대의 식생을 복원하기위한 식생자료로 활용되고자 실시되었다. 2018년 4월 9일부터 10월 31일 까지 총 15회에 걸친 계절별 현지 조사를 실시한 결과, 덕항산 지역에서 발견된 관속식물은 90과 302속 479종 4아종 51변종 3품종 총 537분류군으로 조사되었다. 그 중 한국특산식물은 북부지방 고산지대에 자생한다고 알려진 Pseudostellaria setulosa Ohwi(숲개별꽃)과 우리나라 석회암지대에서만 발견된다고 알려진 Saussurea calcicola Nakai(사창분취)와 Peucedanum insolens Kitag.(덕우기름나물)을 포함하여 18분류군이 발견되었고, 희귀 및 멸종위기식물은 멸종위기 야생식물 II급에 속하는 Astilboides tabularis (Hmsl.) Engl.(개병풍)과 Vioela websteri Hemsl.(왕제비꽃)을 포함하여 18분류군이 분포하였다. 또한 석회암지대 지표식물 33분류군, 식물구계학적 특정식물 총 113분류군이 조사되었으며, 귀화식물은 27분류군이 확인되었다. 기후변화 취약식물은 특산식물 11분류군, 북방계식물 22분류군으로 총 33분류군이 조사되었다. 본 대상지는 온대북부 석회암지대의 특성상 특산식물과 북방계식물이 주로 발견되었으며, 남방계식물은 현재까지 발견되지 않았다. 지구온난화로 인한 남방계 식물의 북상은 우려와는 달리 현재까지는 미비한 수준으로 판단되며, 북방계식물의 생육에 적합한 환경을 유지하고 있는 것으로 판단된다.

• Ocean and Polar Research
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• 제43권1호
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• pp.45-51
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• 2021

Studies on marine zooplankton diversity and ecology are important for understanding marine ecosystem, as well as environmental conservation and fisheries management. DNA metabarcoding is known as a useful tool to reveal and understand diversity among animals, but a comparative evaluation with classical microscopy is still required in order to properly use it for marine zooplankton research. This study compared crustacean mesozooplankton taxa revealed by morphological analysis and metabarcoding of the cytochrome oxidase I (COI). A total of 17 crustacean species were identified by morphological analysis, and 18 species by metabarcoding. Copepods made up the highest proportion of taxa, accounting for more than 50% of the total number of species delineated by both methods. Cladocerans were not found by morphological analysis, whereas amphipods and mysids were not detected by metabarcoding. Unlike morphological analysis, metabarcoding was able to identify decapods down to the species level. There were some discrepancies in copepod species, which could be due to a lack of genetic database, or biases during DNA extraction, amplification, pooling and bioinformatics. Morphological analysis will be useful for ecological studies as it can classify and quantify the life history stages of marine zooplankton that metabarcoding cannot detect. Metabarcoding can be a powerful tool for determining marine zooplankton diversity, if its methods or database are further supplemented.

• Journal of Plant Biotechnology
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• 제48권1호
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• pp.26-33
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• 2021

당귀는 일반적으로 이용되는 대표적인 다년생의 약용식물이다. 최근 국제적 추세에 따라 자국의 유전자원의 발굴, 보존 등이 강화됨에 따라 인접국가와 국내 자생 당귀 계통을 판별할 수 있는 기준설정에 관한 연구의 필요성이 대두되고 있지만, 분자생물학적 판별 기술의 개발은 아직 미흡한 실정이다. 본 연구에서는 국내 토종 당귀인 참당귀와 세발당귀, 그리고 해외 유래 당귀 종의 기원을 판별하기 위해 핵의 리보솜에 존재하는 ITS 유전자단편에서 SNP를 이용한 판별 프라이머를 확보하였으며, 이를 보완하여 보다 신속하게 판별하기 위하여 ARMS-PCR 기술을 이용한 판별 마커와 그 조건을 확립하였다. 그러므로, 본 연구에서 개발된 SNP 마커는 다양한 지역 또는 국가에서 서식하는 당귀 종들의 신속한 확인을 위해 매우 유용하게 이용될 것으로 생각된다.

• 한국동물생명공학회지
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• 제37권2호
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• pp.113-120
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• 2022

Sperm cryopreservation is a fundamental process for the long-term conservation of livestock genetic resources. Yet, the packaging method has been shown, among other factors, to affect the frozen-thawed (FT) sperm quality. This study aimed to develop a new mini-straw for sperm cryopreservation. In addition, the kinematic patterns, viability, acrosome integrity, and mitochondrial membrane potential (MMP) of boar spermatozoa frozen in the developed 0.25 mL straw, 0.25 mL (minitube, Germany), or 0.5 mL (IMV technologies, France) straws were assessed. Post-thaw kinematic parameters were not different (experiment 1: total motility (33.89%, 32.42%), progressive motility (19.13%, 19.09%), curvilinear velocity (42.32, 42.86), and average path velocity (33.40, 33.62) for minitube and the developed straws, respectively. Further, the viability (38.56%, 34.03%), acrosome integrity (53.38%, 48.88%), MMP (42.32%, 36.71%) of spermatozoa frozen using both straw were not differ statistically (p > 0.05). In experiment two, the quality parameters for semen frozen in the developed straw were compared with the 0.5 mL IMV straw. The total motility (41.26%, 39.1%), progressive motility (24.62%, 23.25%), curvilinear velocity (46.44, 48.25), and average path velocity (37.98, 39.12), respectively, for IMV and the developed straw, did not differ statistically. Additionally, there was no significant difference in the viability (39.60%, 33.17%), acrosome integrity (46.23%, 43.23%), and MMP (39.66, 32.51) for IMV and the developed straw, respectively. These results validate the safety and efficiency of the developed straw and highlight its great potential for clinical application. Moreover, both 0.25 mL and 0.5 mL straws fit the present protocol for cryopreservation of boar spermatozoa.

• Genomics & Informatics
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• 제19권4호
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• pp.44.1-44.9
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• 2021

Autism is a complex neurodevelopmental disorder, the prevalence of which has increased drastically in India in recent years. Neuroligin is a type I transmembrane protein that plays a crucial role in synaptogenesis. Alterations in synaptic genes are most commonly implicated in autism and other cognitive disorders. The present study investigated the neuroligin 3 gene in the Indian autistic population by sequencing and in silico pathogenicity prediction of molecular changes. In total, 108 clinically described individuals with autism were included from the North Karnataka region of India, along with 150 age-, sex-, and ethnicity-matched healthy controls. Genomic DNA was extracted from peripheral blood, and exonic regions were sequenced. The functional and structural effects of variants of the neuroligin 3 protein were predicted. One coding sequence variant (a missense variant) and four non-coding variants (two 5'-untranslated region [UTR] variants and two 3'-UTR variants) were recorded. The novel missense variant was found in 25% of the autistic population. The C/C genotype of c.551T>C was significantly more common in autistic children than in controls (p = 0.001), and a significantly increased risk of autism (24.7-fold) was associated with this genotype (p = 0.001). The missense variant showed pathogenic effects and high evolutionary conservation over the functions of the neuroligin 3 protein. In the present study, we reported a novel missense variant, V184A, which causes abnormal neuroligin 3 and was found with high frequency in the Indian autistic population. Therefore, neuroligin is a candidate gene for future molecular investigations and functional analysis in the Indian autistic population.

• 한국작물학회지
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• 제33권s01호
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• pp.39-47
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• 1988

Soybean grain is most widely used and soybean crop produces most high protein per area among crops. To meet rapid increase of human population and supply protein in safety. soybean has considered more and more important crop. And it has been emphasizing that high quality and high protein soybean breeding must be made efforts in future. Many papers related to soybean breeding for high quality and protein and soybean protein composition have suggested the problems to do in future. Soybean germplasm collection. classification and conservation should be continuously performed, and it is emphasized that wild type of soybeans (G. soja) be considered to use in breeding for high protein varieties. Selections would be better emphasized in first yield and therefore high yield of protein per area. Selection for high protein would be secondary criterion. High protein lines with high yielding potential could be selection from certain populations, and breeders should consider this phenomenon in procedure of selection. Heritability of protein percent is relatively high and genetic gain of increment of protein percent is large. Soybean protein which is comprised 70 to 90% of globulin is constituted mostly 11S and 7S proteins. Sulfur-containing amino acids, methionine and cysteine, are identified to contain more in 11S protein than 7S protein. High 11S germplasm should be desirable to use in crossing plan, and selection of high ratio of 11S/7S lines be better in development of high quality varieties.

• Proceedings of the National Institute of Ecology of the Republic of Korea
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• 제4권1호
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• pp.28-42
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• 2023

Seed dispersal supports community structure, maintains genetic connectivity across fragmented landscapes, and influences vegetation assemblages. In the Philippines, only two seed dispersal studies have compared different dispersal agents. We examined the seed dispersal patterns of water, wind, birds, and bats in the Caliraya Watershed, Philippines. We aimed to determine the floral species that were dispersed and how the forest characteristics influenced seed dispersal. By running seed rain traps and drift litter collection from March to June 2022, we analyzed 14,090 seeds in a privately owned study site within the watershed. Water did not exclusively disperse any species and acted as a secondary disperser. Seed density (seeds/trap) was significantly higher for bird-dispersed (n=166) and bat-dispersed (n=145) seeds than for wind-dispersed (n=79) seeds (One-way analysis of variance [ANOVA]: F_2,87=16.21, P<0.0001). Species number (species/trap) was significantly higher for bird-dispersed (n=3.7) and bat-dispersed (n=3.9) seeds than for wind-dispersed (n=0.2) seeds (One-way ANOVA: F_2,87 =16.67, P<0.0001). Birds dispersed more species because they are more diverse and access a wider variety of fruits, unlike bats. Birds and bats target different fruits and provide separate seed dispersal services. Generalized linear model analyses revealed that the number and basal area of fleshy fruit trees most strongly influenced the bird seed dispersal patterns. Therefore, we recommend a three-way approach to restoration efforts in the Caliraya Watershed: (1) ensure the presence of fleshy fruit trees in restoration zones, (2) assist the establishment of mid-successional and wind-dispersed trees, and (3) intensify the conservation efforts for both flora and faunal diversity.