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Detection of Protein Subcellular Localization based on Syntactic Dependency Paths (구문 의존 경로에 기반한 단백질의 세포 내 위치 인식)

  • Kim, Mi-Young
    • The KIPS Transactions:PartB
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    • v.15B no.4
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    • pp.375-382
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    • 2008
  • A protein's subcellular localization is considered an essential part of the description of its associated biomolecular phenomena. As the volume of biomolecular reports has increased, there has been a great deal of research on text mining to detect protein subcellular localization information in documents. It has been argued that linguistic information, especially syntactic information, is useful for identifying the subcellular localizations of proteins of interest. However, previous systems for detecting protein subcellular localization information used only shallow syntactic parsers, and showed poor performance. Thus, there remains a need to use a full syntactic parser and to apply deep linguistic knowledge to the analysis of text for protein subcellular localization information. In addition, we have attempted to use semantic information from the WordNet thesaurus. To improve performance in detecting protein subcellular localization information, this paper proposes a three-step method based on a full syntactic dependency parser and WordNet thesaurus. In the first step, we constructed syntactic dependency paths from each protein to its location candidate, and then converted the syntactic dependency paths into dependency trees. In the second step, we retrieved root information of the syntactic dependency trees. In the final step, we extracted syn-semantic patterns of protein subtrees and location subtrees. From the root and subtree nodes, we extracted syntactic category and syntactic direction as syntactic information, and synset offset of the WordNet thesaurus as semantic information. According to the root information and syn-semantic patterns of subtrees from the training data, we extracted (protein, localization) pairs from the test sentences. Even with no biomolecular knowledge, our method showed reasonable performance in experimental results using Medline abstract data. Our proposed method gave an F-measure of 74.53% for training data and 58.90% for test data, significantly outperforming previous methods, by 12-25%.

A Systematic Review on the Application of the Theory of Information Worlds

  • Park, Sungjae;Lee, Jisue;Hollister, Jonathan M.
    • Journal of Information Science Theory and Practice
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    • v.10 no.4
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    • pp.87-109
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    • 2022
  • Previous studies have found that the use or development of theory in library and information science (LIS) research is comparatively low and may be trending downward. LIS has also been criticized for relying on theories imported from other disciplines rather than applying or developing theories from within. The theory of information worlds, a social information behavior theory originally introduced in 2008, represents a newer LIS theory whose level of adoption is understudied. This study features a systematic literature review of peer-reviewed research articles which cited or used the theory of information worlds from 2008 to early 2022 to identify trends related to levels of theory use, publication venues, author affiliations, countries, and collaborations, as well as research methods, topics, and populations. Findings suggest that both awareness and use of the theory of information worlds are positively trending, though at slower rates for higher levels of theory use, such as full applications of the theory to guide the collection and analysis of empirical data. The theory has also been used by researchers from around the world and across disciplines, most often with mixed and qualitative methods. While the growth of a new LIS theory is promising, the authors echo calls for increased use and development of the theory of information worlds, and other LIS theories more broadly, and as more interdisciplinary collaboration.

Information Poverty of Korean Residents in Japan (재일한인(在日韓人)의 정보빈곤에 관한 연구)

  • Lee Jae-Whoan
    • Journal of the Korean Society for Library and Information Science
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    • v.40 no.2
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    • pp.33-58
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    • 2006
  • This article deals with the information poverty issue of Korean residents in Japan. In details, it introduces the substantial examples of information poverty which the Korean residents in Japan have experienced in their daily lives, and analyzes the factors causing such information poverty. The focus is on identifying the 'relative' information-poor groups in the Korean community. Finally suggested is a strategic method to improve both the poor information literacy of Korean residents and the poor information environment of Korean community in Japan. The data needed for discussion were collected by two methods a full-scale survey with 532 Korean residents and an in-depth interviews with 24 samples drawn from the survey participants.

A Fuel Cell Generation System with a Fuel Cell Simulator

  • Lee Tae-Won;Jang Su-Jin;Jang Han-Keun;Won Chung-Yuen
    • Journal of Power Electronics
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    • v.5 no.1
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    • pp.55-61
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    • 2005
  • A fuel cell (FC) system includes a fuel processor plus subsystems to manage air, water, and thermal energy, and electric power. The overall system is high-priced and needs peripheral devices. In this paper, a FC simulator is designed and constructed with the electrical characteristics of a fuel cell generation (FCG) system, using uses a simple buck converter to overcome these disadvantages. The characteristic voltage and current (V-I) curve for the FC simulator is controlled by a simplified linear function. In addition, to verify FCG system performance and operation, a full-bridge DC/DC converter and a single-phase DC/AC inverter were designed and constructed for FC applications. Close agreement between the simulation and experimental results confirms the validity and usefulness of the proposed FC simulator.

Design of a Communication-Aid Circuit to Detect Eye-Gazed Patterns

  • Eguchi, Kei;Ueno, Fumio;Zhu, Hongbing;Tabata, Toru;Jayawickrema, Madhava
    • Proceedings of the IEEK Conference
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    • 2002.07a
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    • pp.470-473
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    • 2002
  • A communication-aid circuit to detect eye-gazed patterns is proposed in this paper. The circuit is an analog-digital mixed system. By determining the direction of eye-gazed pattern, the circuit detects an eye-gazed pattern from 2-dimensional arrayed patterns on a syllabary. Different from conventional systems, the syllabary is moved to overlap the eye-gazed pattern with the center coordinate of screen. Thus, the proposed circuit can avoid a complex calculation of the distance between the eye-gazed point and the center coordinate. Furthermore: an economical size of hardware can be provided since no full-adders are required by employing floating-gate MOSFBT's. The validity of the cricuit design is confirmed by computer simulations. Furthermore, to implement onto an IC chip, the layout design is performed by using a CAD tool, MAGIC.

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Research of Vehicle Navigation Based Video-GIS

  • Feng, Jiang-Fan;Zhu, Guan-Yu;Liu, Zhao-Hong;Li, Yan
    • Journal of Korea Spatial Information System Society
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    • v.11 no.2
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    • pp.39-44
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    • 2009
  • In order to make the effect of the navigation system more direct, the paper proposes a thought of vehicle navigation system based on Video-GIS. A semantic framework has been defined whose core is focused on the integration and interaction of video and spatial information, which supports full content retrieval based on multimodal metadata extraction and fusion, and supports kinds of wireless access mode. Furthermore, requirements of prototype system are discussed. Then the design and implementation of framework are discussed. Next, describe the key ideas and technologies involved. Finally, we point out its future research trend.

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Implementation of CoAP-Lite Protocol over USN

  • Jeong, Sun-Chul;Yu, So-Ra;Jung, Hoe-Kyung
    • Journal of information and communication convergence engineering
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    • v.9 no.5
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    • pp.602-606
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    • 2011
  • It is necessary for developing specific application protocol for mobile sensor end nodes and data collection devices that have constrained resources and computing powers. Because of these needs, IETF WG developed CoAP protocol and Internet draft was released, and processing to international standardization of this protocol. Because sensor nodes and information collection devices have restricted resources and computing powers, there are some limitations for applying to this proposed protocol directly. Thus in this paper we shows the implementation of full CoAP protocol for server, works on Linux and CoAP-Lite over telos which works on TinyOS for information collection devices. In this implementation we verified the main activities of CoAP protocol over USN by modifying some hardware with dependent algorithm.

Parallel Resonant Soft Switching Inverter based on Delta-Modulation Method (Delta-Modulation 기법을 적용한 병렬 공진형 소프트 스위칭 인버터)

  • Choi, Kwang-Soo;Kim, Young-Ho;Kim, Jun-Gu;Won, Chung-Yuen;Jung, Yong-Chae;Oh, Dong-Sung
    • Proceedings of the KIPE Conference
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    • 2009.11a
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    • pp.212-214
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    • 2009
  • In this paper, we have proposed a Parallel Resonant Soft Switching Inverter based on Delta-Modulation Method. The conventional full-bridge inverter generates switching losses due to the hard switching. The proposed inverter operates soft switching using a DC-link switch and resonant circuit. So, all of the switches in the proposed inverter operates soft switching. Therefore the proposed inverter can reduce not only switching loss but also capacity and size of passive devices due to the resonant elements. The validity of the proposed inverter is verified thorough the theoretical analysis and simulation.

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Study of Crosstalk in Multi-conductor system and Equivalent Circuit Model (인접선 신호선의 누화(Crosstalk)에 대한 해석 및 회로 모델에 관한 연구)

  • Lee, Dong-Jae;Ha, Jung-Rae;Kim, Jong-Min;Nah, Wan-Soo
    • Proceedings of the KIEE Conference
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    • 2009.07a
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    • pp.2211_2212
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    • 2009
  • 본 논문에서는 GaAs-Transistor가 접합된 전송선로 사이에서 발생되는 Crosstalk의 영향에 관한 연구를 하였다. 이 모델의 해석을 위해 인접선에서의 Crosstalk의 이론적인 접근을 하고, 3D Full Wave 시뮬레이션과 Circuit 시뮬레이션을 통해 해석하는 Crosstalk의 해석방법에 대한 모델을 제시하고자 한다. 또한 Coupling 된 Solder Bump의 Equivalent Circuit Model을 제시함으로써 Solder Bump의 Coupling이 Crosstalk의 영향에 미치는 영향에 대해 규명하고자 한다.

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Development Information management system over WWW using ASP (Active Server Pages를 이용한 Web 응용 정보관리시스템 개발)

  • 오충헌;정석찬;진현수;조규갑
    • Proceedings of the Korean Operations and Management Science Society Conference
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    • 2000.04a
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    • pp.766-769
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    • 2000
  • In recent years, Internet/Intranet represents the next generation of computing environment. Therefore, it is necessary to integrate WWW((World Wide Web) over internet/intranet and DBMS(Database Management System) in proportion to the increase of various users' request and an amount of data variety. Also, also full variety of service over WWW need to accomplish rapidly modification of bug and make a betterment of system according to a feature of rapid change of information and an importance of interaction with users. The typical CGI method commonly used to connect with database has a disadvantage in time and resources in system due to frequent connection with database. Therefore, this paper provides the conceptual structure and implementation of information management system over WWW with applying a recent information technology called ASP(Active Server Pages) that controls and arranges client logic dynamically in server-side and introducing a concept of working group and folder to database design.

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