• Journal of Microbiology and Biotechnology
• /
• v.25 no.3
• /
• pp.321-327
• /
• 2015

Nocardia salmonicida is one of the main pathogens of fish nocardiosis. The purpose of this study was to build a loop-mediated isothermal amplification (LAMP) method for the rapid and sensitive detection of N. salmonicida. A set of four primers were designed from the 16S-23S rRNA intergenic spacer region of N. salmonicida, and conditions for LAMP were optimized as incubating all the reagents for 60 min at 64℃. LAMP products were judged with agar gel electrophoresis as well as with the naked eye after the addition of SYBR Green I. Results showed the sensitivity of the LAMP assay was 1.68 × 10³ CFU/ml (16.8 CFU per reaction) and 10-fold higher than that of PCR. The LAMP method was also effectively applied to detect N. salmonicida in diseased fish samples, and it may potentially facilitate the surveillance and early diagnosis of fish nocardiosis.

• Journal of the Korean Society of Fisheries and Ocean Technology
• /
• v.22 no.1
• /
• pp.6-10
• /
• 1986

The feasibility of passive detection of fishes which had been caught in the fishing grounds near the Korean peninsula was theoretically investigated. Considering the commercial importance and the acoustical informations readily identified, although many species of fish make noise, Croaker is clarified to be a representative fish for passive fish detection. Assuming a source level of the sound produced by croakers is given as 150-18OdB (re 1l'pa, 500 Hz bandwidth), The range detected by a passive line array sonar is estimated to be about 3-20km. In addition, the tonal noise (700~800Hz) made by croaker that is easily separated from underwater noise is expected to increase the ability to discriminate from the other species of fish.

• Journal of the Korea Institute of Information and Communication Engineering
• /
• v.8 no.3
• /
• pp.645-653
• /
• 2004

The prediction and its visualization on fish behaviour in relation to fishing gear are carried out based on field detection and observation during fishing operation. However, field observation is very difficult due to variable underwater environments and accordingly due to complex, chaotic response of fish behaviour in the physiological and ecological points. Therefore simple graphic display in previous results was not enough to represent real underwater images of the fishing gear and fish behaviour. In this study more actual visualization technique was developed using by previous fish behaviour model with chaos theory in order to predict, evaluate or analyse complex and non-linear phenomena of response patterns in complex fish behaviour. In addition, display of the fish finder was also designed to simulate the underwater fish detection and distribution in fishing ground. This suggested visualization tool was very similar to the information of the fish movement in the field observation in visual underwater reality and useful to check up between simulations and observations.

• Journal of the Korean Society of Fisheries and Ocean Technology
• /
• v.36 no.3
• /
• pp.195-201
• /
• 2000

This paper discusses methods for the stable bottom detection and the optimum bottom offset which enable to separate the fish echoes from the bottom echoes with echo integration of demersal fish. In preprocessing of the echo signal, the bottom detection has to be done stably against the fluctuation of echo level and the bottom offset has to be set to a minimum height such that near bottom fish echoes are included Two methods of bottom detection, namely echo level threshold method and maximum echo slope method were compared and analyzed. The echo level method works well if the ideal threshold level was given but it sometimes misses the bottom because of the fluctuation of the echo. Another method to detect the bottom which uses maximum echo slope indicates the simple and stable bottom detection. In addition, the bottom offset has to be set near to the bottom but not to include the bottom echo. Optimum bottom offset should be set a few samples before the detected bottom echo which relates the beginning of pulse shape and acoustic beam pattern to the bottom feature.

• Fisheries and Aquatic Sciences
• /
• v.16 no.4
• /
• pp.273-277
• /
• 2013

Vibriosis caused by Vibrio anguillarum and edwardsiellosis caused by Edwardsiella tarda are septicemic diseases of many commercially important freshwater and marine fishes, and threaten the aquaculture industry in Korea. Early diagnosis and accurate identification of these two bacterial species could help to prevent these diseases and minimize the damage to cultured marine species. This study designed a duplex polymerase chain reaction (PCR) method for the simultaneous detection of two major fish pathogens: V. anguillarum and E. tarda. Each pair of oligonucleotide primers exclusively amplified the target groEL gene of the specific microorganism. Twenty-two Vibrio and ten non-Vibrio enteric species were used to check the specificity of the primers, which were found to be highly specific for the target species, even among closely related species. The detection limit was 400 pg for V. anguillarum and 4 ng for E. tarda when mixed purified DNA was used as the template. This assay showed high specificity and sensitivity in the simultaneous detection of V. anguillarum and E. tarda from artificially inoculated seawater and fish.

• IEMEK Journal of Embedded Systems and Applications
• /
• v.18 no.1
• /
• pp.19-24
• /
• 2023

In traditional fish farming way, the workers have to observe all of the pools every time and every day to feed at the right timing. This method causes tremendous stress on workers and wastes time. To solve this problem, we implemented an automatic detection system for feeding time using deep neural network. The detection system consists of two steps: classification of the presence or absence of feed and checking DO (Dissolved Oxygen) of the pool. For the classification, the pretrained ResNet18 model and transfer learning with custom dataset are used. DO is obtained from the DO sensor in the pool through HTTP in real time. For better accuracy, the next step, checking DO proceeds when the result of the classification is absence of feed several times in a row. DO is checked if it is higher than a DO reference value that is set by the workers. These actions are performed automatically in the UI programs developed with LabVIEW.

• Journal of fish pathology
• /
• v.21 no.3
• /
• pp.259-270
• /
• 2008

Disease surveillance was performed to monitor the prevalence of fish pathogens in wild marine fish caught in coastal offshore water in Korea. A total of 333 of fish samples were collected at set net or fish market at landing port in Pohang (East Sea), Taean (Western Sea), Goseong and Tongyeong (Southern Sea) and 21 species of pathogens causing clinical infections to farmed fish were investigated. The detection rates of fish pathogens from Mugili formes, Tetraodontiformes, Pleuroneciformes, Sorpaeniformes, erciformes and Clupeiformes were 90.9, 61.1, 47.6, 43.6, 37.2 and 11.8%, respectively. Comparing with prevalence of diseases seasonally, both the detection rates of bacteria and parasite were higher than those of virus in April but the detection rates of parasites were distinctively higher than those of bacteria in August with high water temperature. Virus were detected in fish samples caught in the Western and Southern Sea in April. The detected parasites were Trichodina, Ichthyophthirius, Dactylogyrus, Microcotyle, Bivagina, Caligus, Alella and Myxobolus. Among the bacterial pathogens, Vibrio, Streptococcus, Photobacterium, Psuedomonas were predominant. Viral nervous necrosis virus (VNNV) and flounder lymphocystis disease virus (FLDV) were detected from the 6 species of fish virus examined in this study.

• Fisheries and Aquatic Sciences
• /
• v.14 no.3
• /
• pp.218-225
• /
• 2011

Dual frequency identification sonar (DIDSON) is an imaging sonar that has been used for numerous fisheries investigations in a diverse range of freshwater and marine environments. The main purpose of DIDSON is fish counting, fish sizing, and fish behavioral studies. DIDSON records video-quality data, so processing power for handling the vast amount of data with high speed is a priority. Therefore, a semiautomated analysis of DIDSON data for fish counting, sizing, and fish behavior in Echoview (fisheries acoustic data analysis software) was accomplished using testing data collected on the Rakaia River, New Zealand. Using this data, the methods and algorithms for background noise subtraction, image smoothing, target (fish) detection, and conversion to single targets were precisely illustrated. Verification by visualization identified the resulting targets. As a result, not only fish counts but also fish sizing information such as length, thickness, perimeter, compactness, and orientation were obtained. The alpha-beta fish tracking algorithm was employed to extract the speed, change in depth, and the distributed depth relating to fish behavior. Tail-beat pattern was depicted using the maximum intensity of all beams. This methodology can be used as a template and applied to data from BlueView two-dimensional imaging sonar.

• Journal of fish pathology
• /
• v.25 no.3
• /
• pp.257-262
• /
• 2012

A reverse transcriptase loop-mediated isothermal amplification (RT-LAMP) assay was evaluated to monitor infectious hematopoietic necrosis virus (IHNV) from artificially infected rainbow trout Oncorhynchus mykiss. The cumulative mortalities of fish challenged with IHNV at $10^{6.5}\;TCID_{50}$/fish, $10^{5.5}\;TCID_{50}$/fish and $10^{4.5}\;TCID_{50}$/fish were 40%, 0% and 0%, respectively. Dead fish and survivors at 16 and 28 d post-challenge in each group were employed for IHNV detection by RT-LAMP assay and virus isolation using BF-2 cells. IHNV from $10^{4.3}$ to $10^{6.8}\;TCID_{50}/ml$ was isolated from all the dead fish and also detected in all of the examined dead fish by RT-LAMP assay. In survivors at 16 d, 60% (3/5 fish, $10^{2.8}-10^{5.05}\;TCID_{50}/ml$), 20% (1/5 fish, $10^{1.05}\;TCID_{50}/ml$) and 60% (3/5 fish, $10^{1.05}-10^{4.8}\;TCID_{50}/ml$) were found to be IHNV-positive by virus isolation in fish challenged with IHNV at $10^{6.5}\;TCID_{50}$/fish, $10^{5.5}\;TCID_{50}$/fish and $10^{4.5}\;TCID_{50}$/fish, respectively, while 20% (1/5 fish), 0% (0/5 fish) and 20% (1/5 fish) were IHNV-positive by RT-LAMP assay. No IHNV was detected in the survivors at 28 d and control fish. These results indicate that the RT-LAMP assay is useful for detection of IHNV in diseased fish although it is not enough to monitor virus in IHNV-survivors.

• Korean Journal of Fisheries and Aquatic Sciences
• /
• v.51 no.1
• /
• pp.47-53
• /
• 2018

The presence of pathogens in wild fish is a potential threat to the fish being raised nearby fish farm. Surveillance of these pathogens in the wild is, thus, highly important to keep fish in the farm safe from serious communicable diseases. Fish and crustacean were sampled 4 times at Soyang Lake in 2016. Pathogens for five reportable communicable diseases including KHVD (koi herpesvirus disease), SVC (spring viraemia of carp), EUS (epizootic ulcerative syndrome) and WSD (white spot disease), and parasites were investigated. In Soyang Lake, pale chub Zacco platypus was the most abundant. Forty seven pale chub, 8 Korea piscivorous chub Opsarichthys uncirostris, 3 oily shiner Sarcocheilichthys variegatus wakiyae and 2 crucian carp Cyprinus carassius were investigated for detection of target diseases of fish. Seventeen Caridina denticulata denticulata, 12 Oriental river prawn Macrobrachium nipponense and 1 Chinese mitten crab Eriocheir sinensis were used for detection of WSD. As the result, reportable communicable diseases were not detected in all the freshwater animals. Dactylogyrus was detected in Korea piscivorous chub. Copepoda was also detected in pale chub and Korea piscivorous chub. Metacercaria was detected in the pale chub sampled in September and October. Those were not metacercaria of liver fluke Clonorchis sinensis.