• Title/Summary/Keyword: fast analysis

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Workflow-based Bio Data Analysis System for HPC (HPC 환경을 위한 워크플로우 기반의 바이오 데이터 분석 시스템)

  • Ahn, Shinyoung;Kim, ByoungSeob;Choi, Hyun-Hwa;Jeon, Seunghyub;Bae, Seungjo;Choi, Wan
    • KIPS Transactions on Software and Data Engineering
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    • v.2 no.2
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    • pp.97-106
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    • 2013
  • Since human genome project finished, the cost for human genome analysis has decreased very rapidly. This results in the sharp increase of human genome data to be analyzed. As the need for fast analysis of very large bio data such as human genome increases, non IT researchers such as biologists should be able to execute fast and effectively many kinds of bio applications, which have a variety of characteristics, under HPC environment. To accomplish this purpose, a biologist need to define a sequence of bio applications as workflow easily because generally bio applications should be combined and executed in some order. This bio workflow should be executed in the form of distributed and parallel computing by allocating computing resources efficiently under HPC cluster system. Through this kind of job, we can expect better performance and fast response time of very large bio data analysis. This paper proposes a workflow-based data analysis system specialized for bio applications. Using this system, non-IT scientists and researchers can analyze very large bio data easily under HPC environment.

Practical Epistemology Analysis on Epistemic Process in Science Learning (과학 학습의 지식구성 과정에 대한 실제적 인식론 분석)

  • Maeng, Seungho
    • Journal of Korean Elementary Science Education
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    • v.37 no.2
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    • pp.173-187
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    • 2018
  • The purpose of this study is to clarify the specific terms of epistemic and epistemological by reviewing the literature on epistemological understanding of science learning, examine the necessity of epistemic discourse analysis based on the view of social epistemology, and provide an exemplar of practical epistemology analysis for elementary children's science learning. The review was conducted in terms of meaning and terminology about epistemic or epistemological approach to science learning, epistemology of/for science, and methodologies for epistemic discourse analysis. As an alternative way of epistemic discourse analysis in science classroom I employed practical epistemology analysis (by Wickman), evidence-explanation continuum (by Duschl), and DREEC diagram (by Maeng et al.). The methods were administered to an elementary science class for the third grade where children observed sedimentary rocks. Through the outcomes of analysis I sought to understand the processes how children collected data by observation, identified evidence, and constructed explanations about rocks. During the process of practical epistemology analysis the cases of four categories, such as encounter, stand-fast, gap, and relation, were identified. The sequence of encounter, stand fast, gap, and relation showed how children observed sedimentary rocks and how they came to learn the difference among the rocks. The epistemic features of children's observation discourse, although different from scientists' discourses during their own practices, showed data-only conversation, evidence-driven conversation, or explanation inducing conversation. Thus I argue even elementary children are able to construct their own knowledge and their epistemic practices are productive.

A fast construction sequential analysis strategy for tall buildings

  • Chen, Pu;Li, Hao;Sun, Shuli;Yuan, Mingwu
    • Structural Engineering and Mechanics
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    • v.23 no.6
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    • pp.675-689
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    • 2006
  • In structural analysis of tall buildings the traditional primary loading analysis approach that assumes all the loads are simultaneously applied to the fully built structure has been shown to be unsuitable by many researches. The construction sequential analysis that reflects the fact of the level-by-level construction of tall buildings can provide more reliable results and has been used more and more. However, too much computational cost has prevented the construction sequential analysis from its application in CAD/CAE software for building structures, since such an approach needs to deal with systematic changing of resultant stiffness matrices following level-by-level construction. This paper firstly analyzes the characteristics of assembling and triangular factorization of the stiffness matrix in the finite element model of the construction sequential analysis, then presents a fast construction sequential analysis strategy and a corresponding step-by-step active column solver by means of improving the existing skyline solver. The new strategy avoids considerably repeated calculation by only working on the latest appended and modified part of resultant stiffness matrices in each construction level. Without any simplification, the strategy guarantees accuracy while efficiency is greatly enhanced. The numerical tests show that the proposed strategy can be implemented with high efficiency in practical engineering design.

Evaluation of the Image Blurring in the Fast Spin Echo Technique ccording to Variation of the ETL (고속스핀에코기법을 이용한 MRI검사에서 ETL 변화에 따른 영상 blurring의 평가)

  • Kwon, Soon-Yong;Lim, Woo-Taek;Kang, Chung-Hawn;Kim, Kyeong-Soo;Kim, Soon-Bae;Kim, Hyun-Soo
    • Korean Journal of Digital Imaging in Medicine
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    • v.15 no.2
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    • pp.55-61
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    • 2013
  • The purpose of this study is to evaluate image blurring according to variation of the ETL and propose the clinically appropriate ETL range. SIEMENS MAGNETOM Skyra 3.0T and 20 channel head coil were used for the study. MRI phantom was kept the lines horizontally to three direction(X,Y,Z) of the coil and T1, T2 weighted images that used the fast spin echo technique acquired. The ETL with increase of 10 was applied from 10 to 80. In addition, the ETL with increase of 1 was applied in the interval statistically significant differences occurred. And T1, T2 weighted images that used the conventional spin echo technique acquired to compare image blurring of the images that used the fast spin echo technique. The slope of lattice in the images was measured using Image J 1.47v program to evaluate image blurring. And image blurring was determined by the degree of the slope. The statistical significance of both techniques was evaluated by the Kruskal-Wallis test of the SPSS 17.0v. And the correlation of the ETL and image blurring was evaluated quantitatively by regression analysis. The slope of the T1, T2 weighted images that used fast spin echo technique decreased as contrasted with conventional spin echo technique. In the result of the Kruskal-Wallis test, the T1, T2 weighted images that used fast spin echo technique made a significant difference with conventional spin echo technique. Particularly, in the Tomhane' T2 test, the T1, T2 weighted images made a significant difference from ETL 22 and 31 respectively. In the result of the regression analysis, the R-squared of the T1, T2 weighted images are 0.762 and 0.793. It is difficult to apply the long ETL in the T1 weighted image caused by the short TR and multi-slices study. Therefore, clinical impact according to variation of the ETL is very slight in the T1 weighted images. But the application of the proper ETL is demanded in T2 weighted images using the fast spin echo technique in order to prevent image blurring.

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APPLICATION OF FFT-BASED ANALYSIS TO CONTACT CONDITION PREDICTION FOR TRIBOLOGICAL SURFACE DESIGN

  • Sung, I.H.;Lee, H.S.;Kim, D.E.
    • Proceedings of the Korean Society of Tribologists and Lubrication Engineers Conference
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    • 2002.10b
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    • pp.255-256
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    • 2002
  • In this paper, the frictional behavior according to the contact geometry was investigated using a micro-tribotester built inside a Scanning Electron Microscope (SEM) and an Atomic Force Microscope (AFM). FFT (Fast Fourier Transform) analysis for friction was conducted as a method to interpret the contact condition. From the experimental results, it could be concluded that the relative dimensions and distribution of contact asperities on the surface could be predicted by the power spectrum and main frequency in the FFT analysis of the friction signal.

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Dynamics Analysis of Industrial Robot Using Neural Network (뉴럴네트워크를 이용한 산업용 로봇의 동특성 해석)

  • Lee, Jin
    • Proceedings of the Korean Society of Machine Tool Engineers Conference
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    • 1997.04a
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    • pp.62-67
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    • 1997
  • This paper reprdsents a new scheme of neural network control system analysis the robustues of robot manipulator using digital signal processors. Digtal signal processors, DSPs, are micro-processors that are particularly developed for fast numerical computations involving sums and products of variables. Digital version of most advanced control algorithms can be defined as sums and products of measured variables, thus it can be programmed and executed through DSPs. In additions, DSPs are a s fast in computation as most 32-bit micro-processors and yet at a fraction of their prices. These features make DSPs a viable computational tool in digital implementation of sophisticated controllers. Durng past decade it was proposed the well-established theorys for the adaptive control of linear systems, but there exists relatively little general theory for the adaptive control of nonlinear systems. The proposed neuro network control algorithm is one of learning a model based error back-propagation scheme using Lyapunov stability analysis method.

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Fast fractal coding based on LMSE analysis and subblock feature (LMSE 해석 및 부블록 특징에 근거한 고속 프랙탈 부호화)

  • 김상현;김남철
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.22 no.6
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    • pp.1279-1288
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    • 1997
  • In this paper, we propose a fast fractal coding method based on LMSE analysis and subblock feature. In the proposed method, scaling paarameter is calculated and whether search for each domain block should be done or not is determined based on the LMSE analysis of fractal approximation, and isometry parameter is chosen based on subblock feature. To investigate the efficiency of the proposed method, we compared it with Jacquin's method on image quality and encoding time. Experimental results show the proposed method yields nearly the same performance as that of Jacquin method in PSNR, and its encoding time is reduced by about 1/7 times.

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Thermal Analysis of Automotive Disc Brake Using FFT-FEM (FFT-FEM을 이용한 자동차용 디스크 브레이크의 열 해석)

  • Choi, Ji-Hoon;Kim, Do-Hyung;Lee, In
    • Transactions of the Korean Society of Mechanical Engineers A
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    • v.25 no.8
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    • pp.1253-1260
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    • 2001
  • Transient thermal analysis of a three-dimensional axisymmetric automotive disk brake is presented in this paper. Temperature fields are obtained using a hybrid FFT-FEM scheme that combines Fourier transform techniques and finite element method. The use of a fast Fourier transform algorithm can avoid singularity problems and lead to inexpensive computing time. The transformed problem is solved with finite element scheme for each frequency domain. Inverse transforms are then performed for time domain solution. Numerical examples are presented for validation tests. Comparisons with analytical results show very good agreement. Also, a 3-D simulation, based upon an automotive brake disk model is performed.

A monitoring system for wind turbines subjected to combined seismic and turbulent aerodynamic loads

  • Fitzgerald, Breiffni;Basu, Biswajit
    • Structural Monitoring and Maintenance
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    • v.4 no.2
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    • pp.175-194
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    • 2017
  • Research to date has mainly focused on structural analysis and design of wind turbines considering turbulent aerodynamic loading. The combined effects of wind and seismic loading have not been studied by many researchers. With the recent expansion of wind turbines into seismically active regions research is now needed into the implications of seismic loading coupled with turbulent aerodynamic loading. This paper proposes a monitoring procedure for onshore horizontal axis wind turbines (HAWTs) subjected to this combined loading regime. The paper examines the impact of seismic loading on the 5-MW baseline HAWT developed by the National Renewable Energy Laboratory (NREL). A modified version of FAST, an open-source program developed by NREL, is used to perform the dynamic analysis.

A Study on the Analysis and Optimal Control of Nonlinear Systems via Walsh Function (월쉬함수에 의한 비선형계의 해석 및 최적제어에 관한 연구)

  • Kim, Jin-Tae;Kim, Tae-Hun;Lee, Myeong-Gyu;An, Du-Su
    • The Transactions of the Korean Institute of Electrical Engineers D
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    • v.49 no.7
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    • pp.354-362
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    • 2000
  • This paper presents the new adaptive optimal scheme for the nonlinear systems, which is based on the Picard's iterative approximation and fast Walsh transform. It is well known that the Walsh function approach method is very difficult to apply for the analysis and optimal control of nonlinear systems. However, these problems can be easily solved by the improvement of the previous adaptive optimal scheme. The proposed method is easily applicable to the analysis and optimal control of nonlinear systems.

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