• Title/Summary/Keyword: expression of pattern

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Alteration of MRP2 expression and the graft outcome after liver transplantation

  • Yi, Nam-Joon;Kim, Joohyun;Choi, YoungRok;Kim, Heyoung;Lee, Kyoung Bun;Jang, Ja-June;Lee, Jae Young;Lee, Jeong Min;Han, Joon Koo;Lee, Kwang-Woong;Suh, Kyung-Suk
    • Annals of Surgical Treatment and Research
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    • v.95 no.5
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    • pp.249-257
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    • 2018
  • Purpose: Multidrug resistance-associated protein (MRP) 2 is a glutathione conjugate in the canalicular membrane of hepatocytes. Early graft damage after liver transplantation (LT) can result in alteration of MRP2 expression. The purpose of this study was to evaluate the relationship between the pattern of MRP2 alteration and graft outcome. Methods: Forty-one paraffin-embedded liver graft tissues obtained by protocol biopsy within 2 months after LT; these were stained using monoclonal antibodies of MRP2. We selected 15 live donor biopsy samples as a control, that showed homogenous canalicular staining for MRP2. The pattern of canalicular MRP2 staining of graft was classified into 3 types: homogenous (type C0), focal (type C1), and no (type C2,) staining of the canaliculi. Results: In total, 17.1% graft tissues were type C0, 36.6% were type C1, and 46.3% were type C2. The median operation time was longer in patients with type C2 (562.6 minutes) than in patients with type C0 (393.8 minutes) (P = 0.038). The rates of posttransplant complications were higher in patients with type C2 (100%) than in patients with type C0 (42.9%) and C1 (73.3%) (P < 0.001). Conclusion: MRP2 expression pattern was altered in 82.9% after LT. The pattern of MRP2 alteration was associated with longer operation time and higher rates of post-LT complications.

Pattern recognition as a consistent labeling problem

  • Ishikawa, Seiji;Kurokawa, Kiyoshi;Kojima, Ken-Ichi;Kato, Kiyoshi
    • 제어로봇시스템학회:학술대회논문집
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    • 1989.10a
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    • pp.999-1004
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    • 1989
  • This paper discusses a new method of recognizing patterns employing consistent labeling. A consistent labeling problem is a generalized expression of constraint satisfaction problems. When a pattern is recognized by pattern matching, the matching between a reference pattern and an acquired pattern resolves itself into finding correspondence between the pixels on the former and those on the latter. This can be expressed as a consistent labeling problem. Pattern association, a variation of pattern recognition, is also described employing consistent labeling. The proposed technique is supported by experimental results, yet further studies need to be done before its practical use.

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Galectin-1 from redlip mullet Liza haematocheilia: identification, immune responses, and functional characterization as pattern recognition receptors (PRRs) in host immune defense system

  • Chaehyeon Lim;Hyukjae Kwon;Jehee Lee
    • Fisheries and Aquatic Sciences
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    • v.25 no.11
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    • pp.559-571
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    • 2022
  • Galectins, a family of ß-galactoside-binding lectins, have emerged as soluble mediators in infected cells and pattern recognition receptors (PRRs) responsible for evoking and regulating innate immunity. The present study aimed to evaluate the role of galectin-1 in the host immune response of redlip mullet (Liza haematocheilia). We established a cDNA database for redlip mullet, and the cDNA sequence of galectin-1 (LhGal-1) was characterized. In silico analysis was performed, and the spatial and temporal expression patterns in gills and blood in response to lipopolysaccharide polyinosinic:polycytidylic acid, and Lactococcus garvieae were estimated via quantitative real-time PCR. Functional assays were conducted using recombinant protein to investigate carbohydrate binding, bacterial binding, and bacterial agglutination activity. LhGal-1 was composed of 135 amino acids. Conserved motifs (H-NPR, -N- and -W-E-R) within the carbohydrate recognition domain were found in LhGal-1. The tissue distribution revealed that the healthy stomach expressed high levels of LhGal-1. The temporal monitoring of LhGal-1 mRNA expression in the gill and blood showed its significant upregulation in response to immune challenges with different stimulants. rLhGal-1 exhibited binding activity in response to carbohydrates and bacteria. Moreover, the agglutination of rLhGal-1 against Escherichia coli was observed. Collectively, our findings suggest that LhGal-1 may function as a PRR in redlip mullet. Furthermore, LhGal-1 can be considered a significant gene to play a protective role in redlip mullet immune system.

Expression of dehydration responsive element-binding protein-3 (DREB3) under different abiotic stresses in tomato

  • Islam, Mohammad Saiful;Wang, Myeong-Hyeon
    • BMB Reports
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    • v.42 no.9
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    • pp.611-616
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    • 2009
  • We investigated the expression pattern of dehydration responsive element-binding protein-3 in tomato under different abiotic stresses. Full length LeDREB3 cDNA was isolated from tomato plant, followed by phylogenetic analysis based on deduced amino acid sequences that revealed significant sequence similarity to DREB proteins belonging to diverse families of plant species. Southern blot analysis showed duplicate copies of LeDREB3 in the tomato genome while organ-specific expression profiling indicated constitutive expression of LeDREB3 in all tested organs, which was particularly strong in flower. LeDREB3 expression was significantly induced by Nacl, drought, low temperature and $H_2O_2$. Moreover, LeDREB3 was slightly regulated by treatment with ABA and MV. These observations suggest that the LeDREB3 gene may be involved in the response of the tomato plant to stress.

Consensus Clustering for Time Course Gene Expression Microarray Data

  • Kim, Seo-Young;Bae, Jong-Sung
    • Communications for Statistical Applications and Methods
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    • v.12 no.2
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    • pp.335-348
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    • 2005
  • The rapid development of microarray technologies enabled the monitoring of expression levels of thousands of genes simultaneously. Recently, the time course gene expression data are often measured to study dynamic biological systems and gene regulatory networks. For the data, biologists are attempting to group genes based on the temporal pattern of their expression levels. We apply the consensus clustering algorithm to a time course gene expression data in order to infer statistically meaningful information from the measurements. We evaluate each of consensus clustering and existing clustering methods with various validation measures. In this paper, we consider hierarchical clustering and Diana of existing methods, and consensus clustering with hierarchical clustering, Diana and mixed hierachical and Diana methods and evaluate their performances on a real micro array data set and two simulated data sets.

New Rectangle Feature Type Selection for Real-time Facial Expression Recognition (실시간 얼굴 표정 인식을 위한 새로운 사각 특징 형태 선택기법)

  • Kim Do Hyoung;An Kwang Ho;Chung Myung Jin;Jung Sung Uk
    • Journal of Institute of Control, Robotics and Systems
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    • v.12 no.2
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    • pp.130-137
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    • 2006
  • In this paper, we propose a method of selecting new types of rectangle features that are suitable for facial expression recognition. The basic concept in this paper is similar to Viola's approach, which is used for face detection. Instead of previous Haar-like features we choose rectangle features for facial expression recognition among all possible rectangle types in a 3${\times}$3 matrix form using the AdaBoost algorithm. The facial expression recognition system constituted with the proposed rectangle features is also compared to that with previous rectangle features with regard to its capacity. The simulation and experimental results show that the proposed approach has better performance in facial expression recognition.

Expression patterns of PRDM10 during mouse embryonic development

  • Park, Jin-Ah;Kim, Keun-Cheol
    • BMB Reports
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    • v.43 no.1
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    • pp.29-33
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    • 2010
  • It is well known that PR/SET family members participate in transcriptional regulation via chromatin remodeling. PRDM10 might play an essential role in gene expression, but no such evidence has been observed so far. To assess PRDM10 expression at various stages of mouse development, we performed immunohistochemistry using available PRDM10 antibody. Embryos were obtained from three distinct developmental stages. At E8.5, PRDM10 expression was concentrated in the mesodermal and neural crest populations. As embryogenesis proceeded further to E13.5, PRMD10 expression was mainly in mesoderm-derived tissues such as somites and neural crest-derived populations such as the facial skeleton. This expression pattern was consistently maintained to the fetal growth period E16.5 and adult mouse, suggesting that PRDM10 may function in tissue differentiation. Our study revealed that PRDM10 might be a transcriptional regulator for normal tissue differentiation during mouse embryonic development.