• Animal Systematics, Evolution and Diversity
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• v.19 no.2
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• pp.297-304
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• 2003

Phylogenetic analysis of 31 species representing 12 genera in the family Strigidae (Aves: Strigiformes) including 5 species (Bubo bubo, Otus sunia, O. semitorques, Ninox scutulato, Strix aluco) collected from Korea has been undertaken using nucleotide sequences of the mitochondrial cytochrome b gene. Maximum likelihood analysis was performed and pairwise genetic distances were calculated with Kimura's two-parameter and p-distance. Among well-aligned 959 bp used for this study, 459 sites were variable and 398 sites were informative for the phylogenetic analysis. The family Strigidae was divided into three subgroups, Clade I (Aegolius), Clade II (Athene, Micrathene, Glaucidium and Surnia) and Clade III (Bubo, Nycteo, Pulsatrix, Strix, Otus, Ptilopsis, and Ninox). Also, two separated subgroups in the genus Otus were confirmed by the geographical distribution.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.37 no.5
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• pp.405-413
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• 2004

The previous morphology-based taxonomic frameworks within the family Syngnathidae had emphasized the significance of the male brood pouch and reproductive biology in defining the group. However, several different hypotheses had been proposed by different investigators. This study has been carried out to determine the phylogenetic relationships among 19 species belonging to the order Syngnathiformes with three Gasterosteiformes species as outgroup taxa by using the mitochondrial cytochrome b DNA sequences. Phylogenetic analyses based on neighbor-joining distance, maximum parsimony, minimum evolution and maximum likelihood method strongly supported that the family Syngnathidae, the suborder Syngnathoidei and the order Syngnathiformes were all monophyletic group. Although much of previous morphological analyses were supported by our molecular data, there were some significant discrepancies between molecular and morphological work. Such an interesting result was that the weedy seadragon (Phyllopteryx taeniolatus) strongly grouped together with the New Zealand pot-belly seahorse (Hippocampus abdominalis). Considering the markedly different brooding structure between them, this unexpected result might be explained whether by multiple independent origins of brooding structure or by hybridization between the female Hippocampus and other syngnathid species having individual membranous egg compartment. In addition, the suborder Aulostomoidei was paraphyletic group because the shrimpfish (Aeliscus strigatus), belonging to the family Centriscidae, always grouped together with the family Syngnathidae as a sister taxon.

• Animal cells and systems
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• v.5 no.3
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• pp.231-236
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• 2001

SINE-R retroposons have been derived from human endogenous retrovirus HERV-K family and found to be hominoid specific. Both SINE-R retroposons and HERV-K family are potentially capable of affecting the expression of closely located genes. From cDNA library of human fetal brain, we identified seven SINE-R retroposons and compared them with sequences derived from GenBank database. The SINE-R retroposons from human feta1 brain showed 85∼97% sequence similarities with the human-specific retroposon SINE-R.C2. They also showed 88∼96% sequence similarities with the sequence of the schizo-cDNA clone that derived from postmortem frontal cortex tissue of a schizophrenic patient. Phylogenetic analysis using the neiqhbor-joining method revealed that the seven new SINE-R retroposons from cDNA library of the human feta1 brain have proliferated independently during human evolution. The data indicate that such SINE-R retroposons are expressed in human fetal brain and deserve further investigation as potential leads to understanding of neuropsychiatric diseases.

• Asian-Australasian Journal of Animal Sciences
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• v.27 no.4
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• pp.464-470
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• 2014

One of the most important traits for both animal science and livestock production is the number of offspring for a species. This study was performed to identify differentially evolved genes and their distinct functions that influence the number of offspring at birth by comparative analysis of eight monotocous mammals and seven polytocous mammals in a number of scopes: specific amino acid substitution with site-wise adaptive evolution, gene expansion and specific orthologous group. The mutually exclusive amino acid substitution among the 16 mammalian species identified five candidate genes. These genes were both directly and indirectly related to ovulation. Furthermore, in monotocous mammals, the EPH gene family was found to have undergone expansion. Previously, the EPHA4 gene was found to positively affect litter size in pigs and supports the possibility of the EPH gene playing a role in determining the number of offspring per birth. The identified genes in this study offer a basis from which the differences between monotocous and polytocous species can be studied. Furthermore, these genes may harbor some clues to the underlying mechanism, which determines litter size and may prove useful for livestock breeding strategies.

• Journal of the Korean Institute of Intelligent Systems
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• v.18 no.5
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• pp.632-637
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• 2008

In real system application, the propeller shaft rate (PSR) estimation algorithm for the feature extraction of the sonar target operates with the following problems: it requires both accurate and efficient the fundamental finding method because it is essential and difficult to distinguish harmonic family composed of the fundamental and its harmonics from the multiple spectral lines in the frequency spectrum-based sonar target classification, and further, it requires an easy design procedure in terms of its structures and parameters. To solve these problems, an evolutionary PSR estimation algorithm using an expert knowledge and the evolution strategy, is proposed. To verify the performance of the proposed algorithm, a sonar target PSR estimation is performed. Simulation results show that the proposed algorithm effectively solves the problems in the realtime system application.

• Nuclear Engineering and Technology
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• v.54 no.10
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• pp.3864-3877
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• 2022

We propose a new approach called PESA (Prioritized replay Evolutionary and Swarm Algorithms) combining prioritized replay of reinforcement learning with hybrid evolutionary algorithms. PESA hybridizes different evolutionary and swarm algorithms such as particle swarm optimization, evolution strategies, simulated annealing, and differential evolution, with a modular approach to account for other algorithms. PESA hybridizes three algorithms by storing their solutions in a shared replay memory, then applying prioritized replay to redistribute data between the integral algorithms in frequent form based on their fitness and priority values, which significantly enhances sample diversity and algorithm exploration. Additionally, greedy replay is used implicitly to improve PESA exploitation close to the end of evolution. PESA features in balancing exploration and exploitation during search and the parallel computing result in an agnostic excellent performance over a wide range of experiments and problems presented in this work. PESA also shows very good scalability with number of processors in solving an expensive problem of optimizing nuclear fuel in nuclear power plants. PESA's competitive performance and modularity over all experiments allow it to join the family of evolutionary algorithms as a new hybrid algorithm; unleashing the power of parallel computing for expensive optimization.

• Communications of the Korean Mathematical Society
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• v.9 no.3
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• pp.547-564
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• 1994

Let X be a real Banach space. We consider the existence of solutions of the abstract nonlinear functional evolution equation : $$ (E) \frac{du(t)}{dt} + A(t)u(t) + F(u)(t) \ni h(t), $$ $$ u(s) = x_o \in D(A(s)), 0 \leq s \leq t \leq T, $$ where u : $[s, T] \to x$ is an unknown function, ${A(t) : 0 \leq t \leq T}$ is a given family of nonlinear (possibly multivalued) operators in X, and $F : C([s, t];X) \to L^{\infty}([s, X];X)$ and $h : [s, T] \to X$ are given functions.

• Journal of Ecology and Environment
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• v.37 no.1
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• pp.35-39
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• 2014

The phylogenetic analysis was carried out to find out the validity of Chrysochroa coreana as a new species. The insect specimens were collected at Kaohsiung, Taiwan and Shizuoka, Japan. Partial region (532 bp) of COI was amplified and sequenced. The sequences were aligned and then analyzed. Based on the Kimura-2-parameter method, we calculated genetic distances among them. It indicated that the Korean individual of C. fulgidissima was closely related to Taiwan one with relatively low genetic distance (0.083). On the other hand, the Japanese individual was remotely related with those of Korean (0.192) and Taiwan (0.183) individuals. To clarify if the populations of C. fulgidissima from Korea, Taiwan, and Japan are different at the level(s) of subspecies, species, or genus, it is necessary that more samples of the members of the family Buprestidae should be collected and genetically analyzed.

• Proceedings of the Korean Institute of Information and Commucation Sciences Conference
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• 2008.08a
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• pp.149-150
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• 2008

Generally, the propeller shaft rate (PSR) estimation algorithm for the classification of the sonar target has the following problems: it requires both accurate and efficient the fundamental finding method because it is essential and difficult to distinguish harmonic family from the frequency spectrum, and further, it requires an easy design procedure in terms of its structures and parameters. To solve these problems, an evolutionary PSR estimation algorithm using an expert knowledge and the evolution strategy, is proposed. Simulation results show that the proposed algorithm effectively solves the problems in the realtime system application.

• Animal Systematics, Evolution and Diversity
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• v.29 no.1
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• pp.56-69
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• 2013

A preliminary list of the following four tephritoid families is provided including 30 Korean species, of which 12 are new to Korea: two Lonchaeidae, three Pallopteridae (two new to Korea), 17 Platystomatidae (two new to Korea), and eight Ulidiidae (all new to Korea). This list is mainly based on the insect collection at the Yonsei University Wonju Campus and on previous publications concerning these taxa. Although a full taxonomic revision for each family is required in the long term, this preliminary list will provide a useful starting point to further investigation of these families. For the other three tephritoid families known in Korea but not treated in the present study, 89 species of Tephritidae, 14 species of Pyrgotidae, and one species of the rare family Ctenostylidae have been reported previously. A total of 134 species in seven families are officially recognized for the Korean fauna of the superfamily Tephritoidea.