• 제목/요약/키워드: environmental DNA (eDNA)

검색결과 229건 처리시간 0.034초

RESVERATROL APPEARS TO AFFECT IN A DIFFERENT WAY PRIMARY VS. FIXED DNA DAMAGE INDUCED BY $H_2O_2$ IN MAMMALIAN CELLS IN VITRO

  • Salvia, Rosella-De;Fabiola Festa;Ruggero Ricordy;Paolo Perticone;Cristina Mucc;Renata Cozzi
    • 한국독성학회:학술대회논문집
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    • 한국독성학회 2001년도 International Symposium on Dietary and Medicinal Antimutgens and Anticarcinogens
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    • pp.108-109
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    • 2001
  • Resveratrol (3, 5, 4'-trihydroxystilbene) is a naturally occuring molecule, synthesized by several plants in response to different stresses. Recently many studies performed in human and mammalian cells demonstrated the involment of resveratrol in the modulation of several biological processes (inhibition of lipidic peroxidation, platelet aggregation, estrogenic activity). It has also been found to possess scavenging and antioxidant properties (1).(omitted)

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In Situ Monitoring of Biofilm Formations of Escherichia coli and Pseudomonas putida by Use of Lux and GFP Reporters

  • Khang, Youn-Ho;Rober S. Burlage
    • Biotechnology and Bioprocess Engineering:BBE
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    • 제3권1호
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    • pp.6-10
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    • 1998
  • A plasmid vector containing two reporter genes, mer-lux and lac-GFP, was transformed to both Escherichia coli and Pseudomonas putida. Their cellular activities and biofilm characteristics were investigated in flow-cell units by measuring bioluminescent lights and fluorescent levels of GFP. Bioluminescence was effective to monitor temporal cell activities, whereas fluorescent level of GFP was useful to indicate the overall cell activities during biofilm development. The light production rates of E. coli and P. putida cultures were dependent upon concentrations of HgCl2. Mercury molecules entrapped in P. putida biofilms were hardly washed out in comparison with those in E. coli biofilms, indicating that P. putida biofilms may have higher affinity to mercury molecules than E. coli biofilms. It was observed that P. putida expressed GFP cDNA in biofilms but not in liquid cultures. This may indicate that the genetic mechanisms of P. putida were favorably altered in biofilm conditions to make a foreign gene expression possible.

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우리나라 Pseudanabaena 속 남조류 종다양성 및 남조류 기원 이취미 물질(2-MIB)의 발생 (Pseudanabaena Species Diversity and Off-flavor Material (2-MIB) Production by Cyanobacteria in Korea)

  • 김건희;박채홍;심연보;김난영;이수곤;장재영;이가람;황순진
    • 한국물환경학회지
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    • 제37권5호
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    • pp.381-397
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    • 2021
  • Off-flavor materials (geosmin and 2-methylisoborneol (2-MIB)) produced by microorganisms, such as, cyanobacteria and actinomycetes, cause freshwater use problems worldwide. Due to unpleasant taste and odor, these microorganisms have raised issues especially in drinking water resources. Recently, there has been increasing concern about 2-MIB and causal cyanobacteria, namely, Pseudanabaena, in Korea. However, material production and ecological dynamics remain largely unexplored. This study reviewed the distribution of Pseudanabaena, its species diversity, and the research trend of molecular ecology related to 2-MIB production in Korea. Based on published literature, we found that seven species of Pseudanabaena which include P. mucicola, P. limnetica, P. redekei, P. catenata, P. galeata, P. yagii, and P. cinerea appeared to occur in a variety of Korean water systems. All of these Pseudanabaena species were found in the North-Han River system (Lakes Soyang, Chuncheon, Uiam, and Paldang). Some of these species were also detected in other watersheds, but the precise species diversity was not identified. Species belonging to the Pseudanabaena genus are hard to classify through general microscopic alpha taxonomy, due to their very small cell size and similar morphological characters. Moreover, the potential of 2-MIB production cannot be detected by microscopic observation. Combining molecular ecological techniques, such as, environmental genomic materials (eDNA, eRNA) analyses to conventional methods could be useful to better understand the off-flavor material production and dynamics, thereby providing more efficient management strategies of freshwater systems.

Bacterial Carotenoids를 생산하는 광합성세균 Erythrobacter longus SY-46의 분리 및 특성 (Isolation and Characteristics of Photosynthetic Bacterium, Erythrobacter longus SY-46 which Produces Bacterial Carotenoids)

  • 김윤숙;이대성;정성윤;이원재
    • 한국환경과학회지
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    • 제17권4호
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    • pp.469-477
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    • 2008
  • The aerobic photosynthetic bacterium, which produces bacterial carotenoids was isolated and identified from coastal marine environments. This bacterium was identified by 16S rDNA sequencing and designated as Erythrobacter longus SY-46. E. longus SY-46 was Gram negative and rod shape, and the optimal culture conditions were $25^{\circ}C$, pH 7.0, and 3.0% NaCl concentration, respectively. The carbon and nitrogen sources required for the optimal growth were lactose and tryptone, respectively. Fatty acid compositions of E. longus SY-46 were $C_{18:1}$(78.32%), v-linolenic acid($C_{18:3n9.12.15c}:3.83%$), margaric acid($C_{17:0}$: 3.38%), palmitic acid($C_{16:0}$: 3.07%), and docosahexaenoic acid($C_{22:6n3}$: 2.21%). In addition, E. longus SY-46 showed the characteristic absorption peaks of bacterial carotenoids(in the region of 450 to 480 nm) and bacteriochlorophyll(770 to 772 nm). Major carotenoids of E. longus SY-46 were polyhydroxylated xanthophylls such as fucoxanthin and zeaxanthin.

거제도 장목항에서 적조원인생물 Akashiwo sanguinea(Dinophyceae): 형태, 분자계통학적 특성 및 온도와 염분에 따른 성장 특성 (Bloom-forming dinoflagellate Akashiwo sanguinea(Dinophyceae) in Jangmok Harbour of Geoje Island, Korea: Morphology, phylogeny and effects of temperature and salinity on growth)

  • 한경하;;윤주연;강병준;김현정;서민호;서호영;신현호
    • 환경생물
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    • 제37권2호
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    • pp.119-128
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    • 2019
  • 거제도 장목항에서 분리한 Akashiwo sanguinea의 형태와 계통학적 특성을 명확히 하고, 여러 온도와 염분구배에 따른 성장조건을 파악하고자 하였다. A. sanguinea의 세포는 오각형이었고, 세포의 길이는 54.7~70.3 ㎛, 폭은 31.5~48.5 ㎛로 나타났다. 핵은 세포의 중심에 위치하였고, 엽록체는 황갈색으로 세포 전체에 퍼져있었다. 상추구는 알파벳 e 모양이었다. 계통분석 결과 장목항에서 분리한 본 배양주는 ribotype A에 포함되었다. 온도 및 염분구배에 따른 성장 실험은 5℃ 이하의 온도를 제외한 모든 온도구배에서 성장이 나타났다. 그리고, 최대성장속도는 온도 20℃, 염분 20 psu에서 0.50 day-1로 나타났고, 최대세포밀도는 온도 25℃, 염분 30 psu에서 1,372 cells mL-1였다. 이 결과는 A. sanguinea가 가을철에 한국 연안에서 최대 증식을 보일 수 있다는 것을 나타낸다.

21일간 methomyl에 노출한 미꾸리의 생물지표 및 내분비계 영향 (Effects on Biomarkers and Endocrine in Muddy Loach (Misgurnus anguillicaudatus) under 21 day Exposure to Methomyl)

  • 한선영;김자현;권가영;염동혁
    • 농약과학회지
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    • 제16권1호
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    • pp.69-77
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    • 2012
  • 내분비계교란물질이 수서생물에 미치는 영향을 평가하기 위하여 미꾸리를 저농도의 methomyl에 21일 동안 노출시켜 생물지표 및 내분비계 영향을 평가하였다. 내분비계교란물질에 대한 노출을 입증하기 위해 널리 이용되는 생물지표인 vitellogenin(VTG)은 21일 동안 0.4 mg/L와 2 mg/L methomyl에 노출된 수컷과 0.08 mg/L, 0.4 mg/L, 2 mg/L의 methomyl에 노출된 암컷에서 대조군에 비해 유의하게 증가하여(p<0.05), methomyl의 수생태계 생물에 대한 내분비계교란 가능성을 확인하였다. Acetylcholinesterase(AChE) 시험 및 comet assay에서는 methomyl에 노출시킨 미꾸리로부터 AChE 활성 저해와 DNA 손상을 확인한 반면, 7-ethoxyresorufin-O-deethylase(EROD) 활성에 대한 대조군과 처리군의 차이는 나타나지 않았다(p<0.05). 개체수준의 생물지표인 condition factor(CF), 간중량지수(hepato-somatic index, HSI), 생식소중량지수(gonado-somatic index, GSI)는 methomyl 노출에 의해 영향을 받지 않는 것으로 나타났다. 현재의 연구결과를 종합해 볼 때, methomyl의 수서생물에 대한 내분비계교란 가능성 및 생화학적 생물지표에 대한 영향을 확인할 수 있었다.

Antimicrobial and Antioxidant Properties of Secondary Metabolites from White Rose Flower

  • Joo, Seong-Soo;Kim, Yun-Bae;Lee, Do-Ik
    • The Plant Pathology Journal
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    • 제26권1호
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    • pp.57-62
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    • 2010
  • Low-molecular-weight secondary metabolites from plants play an important role in reproductive processes and in the defense against environmental stresses or pathogens. In the present study, we isolated various volatiles and phenolic compounds from white Rosa rugosa flowers, and evaluated the pharmaceutical activities of these natural products in addition to their ability to increase survival in response to environmental stress and pathogen invasion. The DPPH and hydroxyl radical-mediated oxidation assay revealed that the white rose flower extract (WRFE) strongly scavenged free radicals in a dose dependent manner. Moreover, WRFE inhibited the growth of E. coli and fatally attacked those cells at higher concentration (>0.5 mg/mL). FITC-conjugated Annexin V stain provided further evidence that WRFE had strong antimicrobial activity, which may have resulted from a cooperative synergism between volatiles (e.g. 1-butanol, dodecyl acrylate and cyclododecane) and phenolic compounds (e.g. gallic acid) retained in WRFE. In conclusion, secondary metabolites from white rose flower hold promise as a potential natural source for antimicrobial and non-chemical based antioxidant agents.

Food waste treatment using Bacillus species isolated from food wastes and production of air-dried Bacillus cell starters

  • An, Byungryul;Park, Mi-Kyung;Oh, Jun-Hyun
    • Environmental Engineering Research
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    • 제23권3호
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    • pp.258-264
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    • 2018
  • The objectives of this research were to 1) isolate and identify thermophilic bacteria for food waste treatment; 2) investigate the capability of food waste treatment using Bacillus species; and 3) develop air-dried Bacillus starters for food waste treatment. Five Bacillus species were isolated from food wastes and identified as Bacillus licheniformis (B. licheniformis) G1, Bacillus circulans C2, Bacillus subtilis (B. subtilis) E1, Bacillus vanillea F1, and Bacillus atrophaeus G2 based on 16S rDNA sequencing. Each identified Bacillus and the mixture of Bacillus species were cultivated in the standard food waste at $45^{\circ}C$ for 8 d. Changes in cell count, solid contents, and pH of the food waste were monitored during cultivation. Air-dried Bacillus cell powders were prepared using wheat flour and lactomil as excipients, and the cell count and survival rate were determined. The cell count of B. licheniformis G1 exhibited the highest number among the tested Bacillus (${\sim}10^8CFU/mL$). The greatest reduction in solid contents of food waste was achieved by B. subtilis E1 (22.6%). The mixture of B. licheniformis G1 and B. subtilis E1 exhibited a synergistic effect on the reduction of solid contents. Lactomil was determined as better excipient than wheat flour based on the greatest survival rate of 95%.

Toxicity Monitoring of Endocrine Disrupting Chemicals (EDCs) Using Freeze-dried Recombinant Bioluminescent Bacteria

  • Kim, Sung-Woo;Park, Sue-Hyung;Jiho Min;Gu, Man-Bock
    • Biotechnology and Bioprocess Engineering:BBE
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    • 제5권6호
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    • pp.395-399
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    • 2000
  • Five different freeze-dried recombinant bioluminescent bacteria were used for the detection of cellular stresses caused by endocrine disrupting chemicals. These strains were DPD2794 (recA::luxCDABE), which is sensitive to DNA damage, DPD2540 (fabA::luxCDABE), sensitive to cellular membrane damage, DPD2511 (katG::luxCDABE), sensitive to oxidative damage, and TV1061 (grpE::luxCDABE), sensitive to protein damage. GC2, which emits bioluminescence constitutively, was also used in this study. The toxicity of several chemicals was measured using GC2. Damage caused by known endocrine disrupting chemicals, such as nonyl phenol, bisphenol A, and styrene, was detected and classified according to toxicity mode, while others, such as phathalate and DDT, were not detected with the bacteria. These results suggest that endocrine disrupting chemicals are toxic in bacteria, and do not act via an estrogenic effect, and that toxicity monitoring and classification of some endocrine disrupting chemicals may be possible in the field using these freeze-dried recombinant bioluminescent bacteria.

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Eicosapentaenoic Acid (EPA) Biosynthetic Gene Cluster of Shewanella oneidensis MR-1: Cloning, Heterologous Expression, and Effects of Temperature and Glucose on the Production of EPA in Escherichia coli

  • Lee, Su-Jin;Jeong, Young-Su;Kim, Dong-Uk;Seo, Jeong-Woo;Hur, Byung-Ki
    • Biotechnology and Bioprocess Engineering:BBE
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    • 제11권6호
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    • pp.510-515
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    • 2006
  • The putative EPA synthesis gene cluster was mined from the entire genome sequence of Shewanella oneidensis MR-1. The gene cluster encodes a PKS-like pathway that consists of six open reading frames (ORFs): ORFSO1602 (multi-domain beta-ketoacyl synthase, KS-MAT-4ACPs-KR), ORFSO1600 (acyl transferase, AT), ORFSO1599 (multi-domain beta-ketoacyl synthase, KS-CLF-DH-DH), ORFSO1597 (enoyl reductase, ER), ORFSO1604 (phosphopentetheine transferase, PPT), and ORFSO1603 (transcriptional regulator). In order to prove involvement of the PKS-like machinery in EPA synthesis, a 20.195-kb DNA fragment containing the genes was amplified from S. oneidensis MR-1 by the long-PCR method. Its identity was confirmed by the methods of restriction enzyme site mapping and nested PCR of internal genes orfSO1597 and orfSO1604. The DNA fragment was cloned into Escherichia coli using cosmid vector SuperCos1 to form pCosEPA. Synthesis of EPA was observed in four E. coli clones harboring pCosEPA, of which the maximum yield was 0.689% of the total fatty acids in a clone designated 9704-23. The production yield of EPA in the E. coli clone was affected by cultivation temperature, showing maximum yield at $20^{\circ}C$ and no production at $30^{\circ}C$ or higher. In addition, production yield was inversely proportional to glucose concentration of the cultivation medium. From the above results, it was concluded that the PKS-like modules catalyze the synthesis of EPA. The synthetic process appears to be subject to regulatory mechanisms triggered by various environmental factors. This most likely occurs via the control of gene expression, protein stability, or enzyme activity.