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Factor Analysis of Biometric Traits of Kankrej Cows to Explain Body Conformation

  • Pundir, R.K.;Singh, P.K.;Singh, K.P.;Dangi, P.S.
    • Asian-Australasian Journal of Animal Sciences
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    • 제24권4호
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    • pp.449-456
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    • 2011
  • Eighteen different biometric traits in 407 Kankrej cows from their breeding zone, i.e. Palanpur district of Gujarat, India, were recorded and analyzed by factor analysis to explain body conformation. The averages of body length, height at withers, height at shoulder, height at knee, heart girth, paunch girth, face length, face width, horn length, horn diameter, distance between horns, ear length, ear width, neck length, neck diameter, tail length with switch, tail length without switch and distance between hip bones were $123.44{\pm}0.37$, $124.49{\pm}0.28$, $94.68{\pm}0.30$, $38.2{\pm}0.14$, $162.56{\pm}0.56$, $178.95{\pm}0.70$, $44.09{\pm}0.10$, $15.91{\pm}0.05$, $42.47{\pm}0.53$, $26.07{\pm}0.19$, $13.34{\pm}0.08$, $31.24{\pm}0.12$, $16.10{\pm}0.05$, $50.63{\pm}0.18$, $73.21{\pm}0.32$, $111.62{\pm}0.53$, $89.34{\pm}0.34$ and $17.28{\pm}0.10\;cm$, respectively. The correlation coefficients between different traits ranged from -0.806 (horn diameter and distance between horns) to 0.815 (heart girth and paunch girth). Most of the correlations were positive and significant. Factor analysis with promax rotation with power 3 revealed three factors which explained about 66.02% of the total variation. Factor 1 described the cow body and explained 38.89% of total variation. The second factor described the front view/face of the cow and explained 19.68% of total variation. The third factor described the back of the cow and explained 7.44% of total variation. It was necessary to include some more variables for factor 3 to obtain a reliable estimate of the back view of the cow. The lower communities shown for distance between horns, horn diameter, ear width and neck diameter indicated that these traits did not contribute effectively to explaining body conformation and can be dropped from recording, whereas all other traits are important and needed to explain body conformation in Kankrej cows. The result suggests that principal component analysis (PCA) could be used in breeding programs with a drastic reduction in the number of biometric traits to be recorded to explain body conformation.

김치로부터 Exopolysaccharide 생성 유산균의 분리 및 특성 규명 (Isolation and Characterization of Exopolysaccharide Producing Lactic Acid Bacteria from Kimchi)

  • 김효주;장해춘
    • 한국미생물·생명공학회지
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    • 제34권3호
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    • pp.196-203
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    • 2006
  • 김치로부터 3종의 EPS 생성 유산균을 분리하였다. 분리균주는 Leuconostoc kimchii, Leuconostoc citreum, Leuconostoc mesenteroides로 동정되었으며, 각각 Leuconostoc kimchii GJ2, Leuconostoc citreum C3, Leuconostoc mesenteroides C11로 명명하였다. EPS생성 김치유산균의 장내 정착성 여부 확인 결과 pH 3.0의 0.05 M sodium phosphate buffer와 인공위액에서 2시간 처리한 후에도 3균주 모두 초기균수($10^8\;CFU/ml$)를 유지하였으며 인공담즙에서 24시간 처리한 후에도 3균주 모두 초기균수($10^8\;CFU/ml$)를 유지하며 3종의 EPS생성 김치유산균 Leu. kimchii GJ2, Leu. citreum C3, Leu. mesenteroides C11이 장내 정착하면서 probiotics로서 작용할 수 있을 것임을 확인하였다. 반면, 대조군으로서 분리균주가 EPS를 생성하지 않았을 때의 경우에는 내산성, 인공위액, 인공담즙에서 처리 후 생균수가 $10^{1-2}\;CFU/ml$ 감소현상을 보여 균체의 EPS생성 여부가 probiotics로서 기능할 수 있는데 결정적 요인임을 보여주었다. 특히 Leu. kimchii GJ2의 경우 E. coli, Pseudomonas, Listeria, Micrococcus, Salmonella, Staphylococcus, Streptococcus속 등의 유해 균주에서 항균활성을 나타내었으며, 생산 항균물질은 단백질성 물질로 확인되었다. 김치유산균 Leu. kimchii GJ2, Leu. citreum C3, Leu. mesenteroides C11로부터의 EPS 생성량은 sucrose(5%) 배지에서 각각 21.49 g/l, 16.46 g/l, 22.98 g/l 였으며, 정제 시에도 각각 14.61 g/l, 7.73 g/l, 4.77 g/l로 기존의 EPS 생성 유산균에서의 생산량에 비해 10배 이상의 높은 생산량을 나타내었다. TLC 및 HPLC를 이용한 EPS 구성 당 확인 결과 3균주 모두 glucose로만 구성된 homopolysaccharides로 확인되었다. EPS 생성량이 가장 좋은 Leu. kimchii GJ2의 평균 분자량은 360,606 Da이었으며, 나머지 두 균주에 대해서는 생성 EPS 형태와 점도의 차이로 미루어 보아 생성 EPS의 분자구조와 분자량이 서로 다른 것으로 판단하였다.

Conotruncal 기형 평가에서 전자선 단층 촬영 (EBT)의 정확성 (Evaluation of Conotruncal Anomalies by Electron Beam Tomography)

  • 최병욱;박영환;최병인;최재영;김민정;유석종;이종균;설준희;이승규
    • Journal of Chest Surgery
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    • 제33권4호
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    • pp.290-300
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    • 2000
  • Background: To evaluate the diagnostic accuracy of EBT(Electron Beam Tomography) in the diagnosis of conotruncal anomaly and to determine whether it can be used as a substitute for cardiac angiography. Material and Method: 20 patients(11M & 9F) with TOF(n=7, pulmonary atresia 2), DORV(n=7), complete TGV(n=4), & corrected TGV(n=2) were included. The age ranged from 7 days to 26 years(median 60 days). We analyzed the sequential chamber localization, the main surgical concenrn in each disease category (PA size, LVED volume and coronary artery pattern for TOF & pulmonary atresia, the LV mass, LVOT obstruction, coronary artery pattern for complete TGV, and type of VSD and TV-PV distance for DORV, etc) and other associated anomalies(e.g., VSD, arch anomalies, tracheal stenosis, etc). Those were compared with the results of echocardiography(n=19), angiography (n=9), and surgery(n=11). The interval between EBT and echocardiography/angiography was within 20/11 days, respectively except for an angiography in a patient with corrected TGV (48 days). Result: EBT correctly diagnosed the basic components of conotruncal anomalies in all subjects, compared to echocardiography, angiography or surgery. These included the presence, type and size of VSD(n=20), pulmonic/LV outflow tract stenosis(n=15/2), relation of great arteries and the pattern of the proximal epicardial coronary arteries(16 out of 20). EBT proved to be accurate in quantitation of the intrapericardial and hilar pulmonary arterial dimension and showed high correlation and no difference compared with echocardiography, angiography, or surgery(p>0.05) except for left pulmonary arterial & ascending arterial dimension by echocardiography. LVED volume in seven TOF(no difference: p>0.05 & high correlation: r=0.996 with echocardiography), and LV mass in 4 complete TGV were obtained. Additionally, EBT enabled the cdiagnosis of subjlottic tracheal stenosis and tracheal bronchus in 1 respectively. Some peripheral PA stenosis were not detected by echocardiography, while echocardiography appeared to be slightly more accurate than EBT in detecing ASD or PDA. Conclusion: EBT can be a non-invasive and accurate modality of for the evaluation of most anatomical alteration including peripheral PS or interruption in patients with conotruncal anomalies. Combined with echocardiography, EBT study provides sufficient information for the palliative or total repair of anomalies.

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갑상선기능항진증에서 $^{99m}Tc-MDP$ 24시간 정체율과 Osteocalcin (24hr Whole-Body Retension of $^{99m}Tc-Methylene$ Diphosphonate and Osteocalcin in patients with Hyperthyroidism)

  • 염광섭;이진오;강태웅;홍성운;임상무
    • 대한핵의학회지
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    • 제24권2호
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    • pp.222-228
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    • 1990
  • The development of histomorphometric and histodynamic investigations has permitted the description of a specific and complex osteopathy in hyperthyroidism. The increased bone turnover rate in hyperthyroid patients may be accompanied by a considerable bone loss. These features are associated with both inclosed osteoclastic bone resorption and increased osteoblastric bone formation, with an accelerated calcification rate. Conventional biochemical markers of bone metabolism, i.e. serum calcium and alkaline phosphatase and urinary hydroxyproline and calcium are normal in most patients with hyperthyroidism. However, the correlation between serum BGP and serum concentration of thyroid hormon suggests that serum BGP may be a sensitive marker of increased bone formation due to the hypersecretion of thyroid hormones. Any increase in bone turnover, whether focal or diffuse, will result in an increase in $^{99m}Tc-methylenediphosphonate$ uptake (MDP). The measurement of this uptake in hyperthyroid patients by bone provides a sensitive and objective means of quantifying skeletal metabolism. Using a standard shadow-shield whole-body monitor and radioimmunoassay kit, we have measured whole-body retention of $^{99m}Tc-MDP$ up to 24hr and concentration of serum Osteocalcin in 20 patients with hyperthyroidism and in 42 normals. The results were as follows; 1) The average of serum Osteocalcin level in 42 patients with normals was $9.90{\pm}4.87(ng/ml)$ and in 20 patients with hyperthyroidism was $19.54{\pm}5.7(ng/ml)$. Both the averages of serum Osteocalcin and 24hr $^{99m}Tc-MDP$ uptakes in hyperthyroid patients were higher than those in normals. 2) $^{99m}Tc-MDP$ uptakes in skeletal system increased in proportion to normal ageing after 40 yrs old in 42 patients with normals. The average of $^{99m}Tc-MDP$ uptakes in hyperthyroid patients were higher than those in normals without related ageing. 3) A significant relationships between the $^{99m}Tc-MDP$ uptakes and serum Osteocalcin level were peformed (r=0.55, $y=17.58+6.7\times$). From the above results we concluded that the measurement of serum Osteocalcin and 24hr $^{99m}Tc-MDP$ uptakes can be used for evaluation of bone turnover as a specific marker in hyperthyroid patients.

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연직 슬릿 유공벽의 투수 매개변수의 마찰계수 산정 (Estimation of Friction Coefficient in Permeability Parameter of Perforated Wall with Vertical Slits)

  • 김열우;서경덕;지창환
    • 한국해안·해양공학회논문집
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    • 제22권1호
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    • pp.25-33
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    • 2010
  • 연직 슬릿 유공벽에서의 정합조건에는 투수 매개변수가 포함되는데, 보통 투수 매개변수는 두 가지 방법으로 계산이 가능하다. 하나는 투수 매개변수를 유공벽에서의 에너지 소산 계수와 제트의 길이로 나타내는 방법으로서, 관련된 모든 변수를 알고 있다는 점에서 장점을 가지고 있으나, 장파의 영역에서 옳지 않은 결과를 초래하는 단점이 있다. 다른 하나는 투수 매개변수를 마찰계수와 관성계수로 나타내는 방법으로서, 단파부터 장파까지 모든 영역에서 올바른 결과를 나타내지만, 반사계수, 투과계수 등에 대한 관측치와 계산치 사이의 최적적합에 기초하여 마찰계수를 결정해야 한다는 단점이 있다. 본 논문에서는 유공벽의 유공율 및 두께, 수심 등 기지의 변수로 마찰계수에 대한 경험식을 제시하였다. 이렇게 함으로써 최적적합 과정을 거치지 않고 마찰계수를 직접 산정할 수 있도록 한다. 경험식을 구하기 위하여 수리실험을 실시하였으며, 다른 연구자들의 결과를 함께 사용하여 경험식을 제시하였다. 제시된 공식을 이용하여 상부는 커튼월이고 하부는 연직 슬릿 유공벽으로 되어 있는 커튼월-파일 방파제의 반사계수 및 투과계수를 계산하였다. 실험치와 계산치가 잘 일치함을 보임으로써 제시한 경험식의 적합성을 검증하였다.

3차원 자기공명 전류밀도 영상법의 수치적 해석 (Numerical Analysis of Three-Dimensional Magnetic Resonance Current Density Imaging (MRCDI))

  • B.I. Lee;S.H. Oh;E.J. Woo;G. Khang;S.Y. Lee;M.H. Cho;O. Kwon;J.R. Yoon;J.K. Seo
    • 대한의용생체공학회:의공학회지
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    • 제23권4호
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    • pp.269-279
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    • 2002
  • 인체에 전류주입하면, 내부에는 전압 및 전류밀도의 분포가 형성된다 이때, 인체내부의 전류밀도와 전류를 주입하는 도선에 흐르는 전류는 자장을 형성하게 된다. 인체내부에 유기된 자속밀도는 자기공명영상의 위상을 변화시키므로. 위상영상으로부터 자속밀도를 측정할 수 있다. 자속밀도의 curl을 취하여 전류밀도를 구하면, 주입전류에 의한 내부의 전류밀도 분포를 영상화하는 것이 가능하다. 이러한 자기공명 전류밀도 영상법을 자기공명 임피던스 단층촬영에 응용하여 고해상도의 저항률 영상을 복원하는 연구가 진행되고 있다. 본 논문에서는 인체와 간은 전도성 물체에 전류를 주입할 때. 내부에 형성되는 전압, 전류밀도 및 자속밀도의 3차원적인 분포를 수치적으로 계산하는 방법을 기술한다. 이러한 수치적인 해석기술은 자기공명 전류밀도 영상법의 실험방법 설계와 자기공명 임피던스 단층촬영의 영상복원 알고리즘 개발에 필수적인 부분이다. 본 논문에서는 유한요소법과 Biot-Savart 법칙에 기반하여, 여러가지 모델에서 계산한 결과를 기술하고, 그 해석을 통하여 수치적인 해의 정확도와 유의성을 검증하였다.

Cutaneous Microflora from Geographically Isolated Groups of Bradysia agrestis, an Insect Vector of Diverse Plant Pathogens

  • Park, Jong Myong;You, Young-Hyun;Park, Jong-Han;Kim, Hyeong-Hwan;Ghim, Sa-Youl;Back, Chang-Gi
    • Mycobiology
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    • 제45권3호
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    • pp.160-171
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    • 2017
  • Larvae of Bradysia agrestis, an insect vector that transports plant pathogens, were sampled from geographically isolated regions in Korea to identify their cutaneous fungal and bacterial flora. Sampled areas were chosen within the distribution range of B. agrestis; each site was more than 91 km apart to ensure geographical segregation. We isolated 76 microbial (fungi and bacteria) strains (site 1, 29; site 2, 29; site 3, 18 strains) that were identified on the basis of morphological differences. Species identification was molecularly confirmed by determination of universal fungal internal transcribed spacer and bacterial 16S rRNA gene sequences in comparison to sequences in the EzTaxon database and the NCBI GenBank database, and their phylogenetic relationships were determined. The fungal isolates belonged to 2 phyla, 5 classes, and 7 genera; bacterial species belonged to 23 genera and 32 species. Microbial diversity differed significantly among the geographical groups with respect to Margalef's richness (3.9, 3.6, and 4.5), Menhinick's index (2.65, 2.46, and 3.30), Simpson's index (0.06, 0.12, and 0.01), and Shannon's index (2.50, 2.17, and 2.58). Although the microbial genera distribution or diversity values clearly varied among geographical groups, common genera were identified in all groups, including the fungal genus Cladosporium, and the bacterial genera Bacillus and Rhodococcus. According to classic principles of co-evolutionary relationship, these genera might have a closer association with their host insect vector B. agrestis than other genera identified. Some cutaneous bacterial genera (e.g., Pseudomonas) displaying weak interdependency with insect vectors may be hazardous to agricultural environments via mechanical transmission via B. agrestis. This study provides comprehensive information regarding the cutaneous microflora of B. agrestis, which can help in the control of such pests for crop management.

기하학적 비선형을 고려한 지하매설 복합재료 파이프의 해석 (GEOMETRIC NINLINEAR ANALYSIS OF UNERGROUND LAMINATED COMPISITE PIPES)

  • 김덕현;이인원;변문주
    • 전산구조공학
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    • 제2권1호
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    • pp.65-70
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    • 1989
  • 우리는 생활주변에서 파이프의 사용을 흔히 볼 수 있다. 그 만큼 파이프의 소요량은 우리 생활에서 엄청난 양이라 할 수 있는데 그것이 기존 재료로는 콘크리트나 철강제품이 대부분을 차지하고 있다. 요즈음 대체 재료로써 복합재료가 여러 산업분야에서 각광을 받고 있다. 처음 항공분야에서 사용이 시작되어 제품의 우수성 뿐 아니라, 그 값이 점차 낮아짐에 따라 여러 분야에서 사용되고 있다. 복합재료는 내구성, 내열성, 내부식성 등 다른 어느 재료보다 좋은 성질을 가지고 있으며 특히 중량이 가볍다. 파이프 매설 공사에 있어서 운반비의 비중은 전체 공사비에 약 20-40%에 달할 만큼 크다. 따라서 복합재료의 선택은 그 비용을 감소시킬 수 있을 뿐 아니라 내구성, 내열성 등 복합재료의 여러가지 우수성을 동시에 가질 수 있다. 그리고 재료의 발달이 가속되고 있어 앞으로 유용성은 더욱 커질 것이다. 지하매설 파이프로써 반경에 비해 두께가 얇은 관인 경우 큰 변형이 발생할 것이다. 따라서 기하학적 비선형성을 고려하여야 한다. 이를 위해 변형 후의 형상에 대해 평형방정식을 세웠으며, 이를 Galerkin's method에 의해 풀었다. 하중조건은 파이프가 땅속에 묻히게 되므로 수직하중은 매설깊이에 비례하며 수평하중은 수평변위에 비례하게 가정하였다. 복합재료로 만들어진 파이프는 층(layer)수와 fiber 방향 등에 따라 강성이 틀려지며 또한 흙의 종류와 발생되는 변위에 따라 파이프-흙간의 상호작용이 달라진다. 본 연구에서는 복합재료로 만들어진 파이프가 지하에 매설된 경우 기하학적 비선형을 고려한 해석방법을 제시하며 파이프 강성에 미치는 여러 인자에 대해 고찰해 보았다. 결과가 유한요소법에 의해 검증되었다. 기술고도화를 위한 과감한 측정관련 투자 결과가 제품의 불량감소에 크게 영향을 준다는 사실이 밝혀졌다. 연구결과에 따른 주요내용과 평가분석 모형을 제시한다.을 나타냄으로써 누에소화액 protease에 의하여 용해되지 않았음을 보여 주었다. 4. 결정성독소의 amino산 조성은 subsp. israelensis에서는 aspartic산이 14.5%로 가장 많은 비율을 차지하였고 그외 4개의 subsp.에서는 glutamic산이 13.9-14.6%로 가장 많았다. 5. 결정성독소의 면역학적 특성을 보면 subsp. israelensis의 항체는 그것의 항원과만 반응하고 그외 4개의 subsp.의 항체는 각각의 항원과 그리고 서로 다른 항원과 교호하여 반응하였다.화지방산을 다량으로 함유한 칠성장어유 및 옥수수유는 동맥경화증 랫트에 있어 생체내 지질대사에 영향을 미침으로써 혈청지질치를 저하시키고 동맥벽내에 지방침착을 억제시켰으며, 이러한 효과는 n-6계 다불포화지방산을 많이 함유하고 있는 옥수수유보다 n-3rP 다불포화지방산을 다량으로 함유한 칠성장어유에 더욱 크게 나타났다isozyme but not with p. esocinus B4 isogyme, reflecting that subunit B is less conservative in its evolution.e bands (fractions) with 290 Kd to 23 Kd molecular weight, and 8 bands of these detected bands developed strongly by silver stain. In serological test, ELISA, we recognized the cross-reaction

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The New X-ray Induced Electron Emission Spectrometer

  • Yu.N.Yuryev;Park, Hyun-Min;Lee, Hwack-Ju;Kim, Ju-Hwnag;Cho, Yang-Ku;K.Yu.Pogrebitsky
    • 한국결정학회:학술대회논문집
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    • 한국결정학회 2002년도 정기총회 및 추계학술연구발표회
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    • pp.5-6
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    • 2002
  • The new spectrometer for X-ray Induced Electron Emission Spectroscopy (XIEES) .has been recently developed in KRISS in collaboration with PTI (Russia). The spectrometer allows to perform research using the XAFS, SXAFS, XANES techniques (D.C.Koningsberger and R.Prins, 1988) as well as the number of techniques from XIEES field(L.A.Bakaleinikov et all, 1992). The experiments may be carried out with registration of transmitted through the sample x-rays (to investigate bulk samples) or/and total electron yield (TEY) from the sample surface that gives the high (down to several atomic mono-layers in soft x-ray region) near surface sensitivity. The combination of these methods together give the possibility to obtain a quantitative information on elemental composition, chemical state, atomic structure for powder samples and solids, including non-crystalline materials (the long range order is not required). The optical design of spectrometer is made according to Johannesson true focusing schematics and presented on the Fig.1. Five stepping motors are used to maintain the focusing condition during the photon energy scan (crystal angle, crystal position along rail, sample goniometer rail angle, sample goniometer position along rail and sample goniometer angle relatively of rail). All movements can be done independently and simultaneously that speeds up the setting of photon energy and allows the using of crystals with different Rowland radil. At present six curved crystals with different d-values and one flat synthetic multilayer are installed on revolver-type monochromator. This arrangement allows the wide range of x-rays from 100 eV up to 25 keV to be obtained. Another 4 stepping motors set exit slit width, sample angle, channeltron position and x-ray detector position. The differential pumping allows to unite vacuum chambers of spectrometer and x-ray generator avoiding the absorption of soft x-rays on Be foil of a window and in atmosphere. Another feature of vacuum system is separation of walls of vacuum chamber (which are deformed by the atmospheric pressure) from optical elements of spectrometer. This warrantees that the optical elements are precisely positioned. The detecting system of the spectrometer consists of two proportional counters, one scintillating detector and one channeltron detector. First proportional counter can be used as I/sub 0/-detector in transmission mode or by measuring the fluorescence from exit slit edge. The last installation can be used to measure the reference data (that is necessary in XANES measurements), in this case the reference sample is installed on slit knife edge. The second proportional counter measures the intensity of x-rays transmitted through the sample. The scintillating detector is used in the same way but on the air for the hard x-rays and for alignment purposes. Total electron yield from the sample is measured by channeltron. The spectrometer is fully controlled by special software that gives the high flexibility and reliability in carrying out of the experiments. Fig.2 and fig.3 present the typical XAFS spectra measured with spectrometer.

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Meta- and Gene Set Analysis of Stomach Cancer Gene Expression Data

  • Kim, Seon-Young;Kim, Jeong-Hwan;Lee, Heun-Sik;Noh, Seung-Moo;Song, Kyu-Sang;Cho, June-Sik;Jeong, Hyun-Yong;Kim, Woo Ho;Yeom, Young-Il;Kim, Nam-Soon;Kim, Sangsoo;Yoo, Hyang-Sook;Kim, Yong Sung
    • Molecules and Cells
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    • 제24권2호
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    • pp.200-209
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    • 2007
  • We generated gene expression data from the tissues of 50 gastric cancer patients, and applied meta-analysis and gene set analysis to this data and three other stomach cancer gene expression data sets to define the gene expression changes in gastric tumors. By meta-analysis we identified genes consistently changed in gastric carcinomas, while gene set analysis revealed consistently changed biological themes. Genes and gene sets involved in digestion, fatty acid metabolism, and ion transport were consistently down-regulated in gastric carcinomas, while those involved in cellular proliferation, cell cycle, and DNA replication were consistently up-regulated. We also found significant differences between the genes and gene sets expressed in diffuse and intestinal type gastric carcinoma. By gene set analysis of cytogenetic bands, we identified many chromosomal regions with possible gross chromosomal changes (amplifications or deletions). Similar analysis of transcription factor binding sites (TFBSs), revealed transcription factors that may have caused the observed gene expression changes in gastric carcinomas, and we confirmed the overexpression of one of these, E2F1, in many gastric carcinomas by tissue array and immunohistochemistry. We have incorporated the results of our meta- and gene set analyses into a web accessible database (http://human-genome.kribb.re.kr/stomach/).