• IMMUNE NETWORK
• /
• 제6권3호
• /
• pp.128-137
• /
• 2006

Background: Apoptosis is a physiologic phenomenon involved in development, elimination of damaged cells, and maintenance of cell homeostasis. Deregulation of apoptosis may cause diseases, such as cancers, immune diseases, and neurodegenerative disorders. The mouse myeloma cell P3-X63-Ag8.653 (v653) is an HGPRT deficient $(HGPRT^-)$ mutant strain. High dependency on de novo transcription and translation of aminopterin induced apoptosis of this cell seems to be an ideal experimental system for searching apoptosis-induced genes. Methods & Results: For searching apoptosis-related genes we carried out GE-array (dot blot), Affymetrix GeneChip analysis, Northern analysis and differential display-PCR techniques. The chip data were analyzed with three different programs. 66 genes were selected through Affymetrix GeneChip analyses. All genes selected were classified into 8 groups according to their known functions. They were Genes of 1) Cell growth/maintenance/death/enzyme, 2) Cell cycle, 3) Chaperone, 4) Cancer/disease-related genes, 5) Mitochondria, 6) Membrane protein/signal transduction, 7) Nuclear protein/nucleic acid binding/transcription binding and 8) Translation factor. Among these groups number of genes were the largest in the genes of cell growth/maintenance/death/enzyme. Expression signals of most of all groups were peaked at 3 hour of apoptosis except genes of Nuclear protein/nucleic acid binding/transcription factor which showed maximum signal at 1 hour. Conclusion: This study showed induction of wide range of proapoptotic factors which accelerate cell death at various stage of cell death. In addition apoptosis studied in this research can be classified as a type 2 which involves cytochrome c and caspase 9 especially in early stages of death. But It also has progressed to type 1 in late stage of the death process.

• Journal of Microbiology and Biotechnology
• /
• 제22권4호
• /
• pp.448-456
• /
• 2012

Thirty-seven carbofuran-degrading bacteria were isolated from agricultural soils, and their genetic and phenotypic characteristics were investigated. The isolates were able to utilize carbofuran as a sole source of carbon and energy. Analysis of the 16S rRNA gene sequence indicated that the isolates were related to members of the genera Rhodococcus, Sphingomonas, and Sphingobium, including new types of carbofuran-degrading bacteria, Bosea and Microbacterium. Among the 37 isolates, 15 different chromosomal DNA patterns were obtained by polymerase chain reaction (PCR) amplification of repetitive extragenic palindromic (REP) sequences. Five of the 15 representative isolates were able to degrade carbofuran phenol, fenoxycarb, and carbaryl, in addition to carbofuran. Ten of the 15 representative isolates had 1 to 8 plasmids. Among the 10 plasmid-containing isolates, plasmid-cured strains were obtained from 5 strains. The cured strains could not degrade carbofuran and other pesticides anymore, suggesting that the carbofuran degradative genes were on the plasmid DNAs in these strains. When analyzed with PCR amplification and dot-blot hybridization using the primers targeting for the previously reported carbofuran hydrolase gene (mcd), all of the isolates did not show any positive signals, suggesting that their carbofuran hydrolase genes had no significant sequence homology with the mcd gene.

• 대한수의학회지
• /
• 제41권1호
• /
• pp.51-57
• /
• 2001

A procedure for extraction and purification of 8 kDa antigen of Brucella abortus RB51 was developed. Bacteria heat inactivated at $60^{\circ}C$, 30 min was extracted by 1% sarcosine and followed by fluid pressure liquid gel filtration chromatography of 2 series, Superose 12 HR 10/30 and Sephacryl S-100. There was produced $71.46{\mu}g/g$(wet) of 8 kDa antigen, and it resisted 1% trypsin, solved 1% triton X-100 higher than distilled water and inactivated 0.1% proteinase K. These results show that 8 kDa antigen may be a lipoprotein existed cell surface of B. abortus RB51. Also, we developed ELISA using purified 8 kDa surface antigen of Brucella abortus RB51 strain, its specificity and sensitivity was 95.0%, 98.6%, respectively. As compared with dot-blot assay using whole cell and ELISA using 8 kDa antigen, its correlation was 93.5%.

• Journal of Microbiology and Biotechnology
• /
• 제20권5호
• /
• pp.862-870
• /
• 2010

Cyperus rotundus L. is a perennial herb that was found to be dominating an area in northeast Brazil previously contaminated with petroleum. In order to increase our knowledge of microorganism-plant interactions in phytoremediation, the bacterial community present in the rhizosphere and roots of C. rotundus was evaluated by culture-dependent and molecular approaches. PCR-DGGE analysis based on the 16S rRNA gene showed that the bacterial community in bulk soil, rhizosphere, and root samples had a high degree of similarity. A complex population of alkane-utilizing bacteria and a variable nitrogen-fixing population were observed via PCR-DGGE analysis of alkB and nifH genes, respectively. In addition, two clone libraries were generated from alkB fragments obtained by PCR of bulk and rhizosphere soil DNA samples. Statistical analyses of these libraries showed that the compositions of their respective populations were different in terms of alkB gene sequences. Using culturedependent techniques, 209 bacterial strains were isolated from the rhizosphere and rhizoplane/roots of C. rotundus. Dot-blot analysis showed that 17 strains contained both alkB and nifH gene sequences. Partial 16S rRNA gene sequencing revealed that these strains are affiliated with the genera Bosea, Cupriavidus, Enterobacter, Gordonia, Mycoplana, Pandoraea, Pseudomonas, Rhizobium, and Rhodococcus. These isolates can be considered to have great potential for the phytoremediation of soil with C. rotundus in this tropical soil area.

• International Journal of Industrial Entomology and Biomaterials
• /
• 제20권2호
• /
• pp.107-114
• /
• 2010

For stable germline transformation, the promoter of Bombyx mori cytoplasmic actin gene (BmA3) has been used for ubiquitous expression of transgenes. So far, no strong promoter is available for ubiquitous expression in B. mori, excluding BmA3 promoter. To identify more powerful promoter than previously reported BmA3 promoter, we isolated 9 clones that show stronger signal compared to BmA3 by a dot blot hybridization. Among these 9 clones, we focused on one clone which has high amino acid homology (85%) with hypothetical protein 32 gene of Lonomia obliqua. This clone, named bHp32 (B. mori hypothetical protein 32) was ubiquitously expressed in all tissues and developmental stage of fifth instar B. mori larvae. As result of promoter assay using dual luciferase assay system, we found the highest transcription activity region (-1,200/+220) in the 5'-flanking region of bHp32 gene, which has 42-fold more intensive promoter activity than BmA3 promoter. Moreover, the bHp32 promoter was normally regulated in Bm5, Sf9, and S2 cells. Therefore, we suggest that bHp32 promoter may be used more powerful and effectively for transgene expression in various insects containing B. mori as a universal promoter.

• 방사선산업학회지
• /
• 제6권2호
• /
• pp.147-152
• /
• 2012

Anthocyanins are major plant pigment and produced through phenylpropanoid pathway. In this study, anthocyanin biosynthesis mechanisms of chrysanthemum flowers were studied using 'Argus' and flower color mutant 'ARTI-purple' which were induced by 40 Gy gamma irradiation ($Co^{60}$). And, three chrysanthemums, 'Ford', 'Yeonja' and 'Orando' were additionally used as the check varieties to understand the relationship between flower color and expression patterns of genes. The expression patterns of the anthocyanin biosynthetic genes were matched with the flower color of the check varieties. High anthocyanin concentration of 'Orando' showed the high expression of anthocyanin biosynthetic genes. In the white flower of 'Ford', expressions of CHI, DFR and ANS were not identified. Despite different flower color, 'Argus' and 'ARTI-purple' showed different expression patterns compared with the check varieties. From the dot blot analysis, we screened the seven genes showing the different expressions between 'Argus' and 'ARTI-purple'.

• 한국미생물·생명공학회지
• /
• 제49권4호
• /
• pp.510-518
• /
• 2021

Bacteriophages are considered excellent sensing elements for platforms detecting bacteria. However, their lytic cycle has restricted their efficacy. Here, we used the minor coat protein pIII domain (N1N2) of phage CTXφ to construct a novel surface plasmon resonance (SPR) biosensor that could detect Vibrio cholerae. N1N2 harboring the domains required for phage adsorption and entry was obtained from Escherichia coli using recombinant protein expression and purification. SDS-PAGE revealed an approximate size of 30 kDa for N1N2. Dot blot and transmission electron microscopy analyses revealed that the protein bound to the host V. cholerae but not to non-host E. coli K-12 cells. Next, we used amine-coupling to develop a novel recombinant N1N2 (rN1N2)-functionalized SPR biosensor by immobilizing rN1N2 proteins on gold substrates and using SPR to monitor the binding kinetics of the proteins with target bacteria. We observed rapid detection of V. cholerae in the range of approximately 10³ to 10⁹ CFU/ml but not of E. coli at any tested concentration, thereby confirming that the biosensor exhibited differential recognition and binding. The results indicate that the novel biosensor can rapidly monitor a target pathogenic microorganism in the environment and is very useful for monitoring food safety and facilitating early disease prevention.

• Journal of Periodontal and Implant Science
• /
• 제28권4호
• /
• pp.659-678
• /
• 1998

본 연구에서는 한국인 성인성 치주염의 관련세균 중에서 구강 스피로헤타의 분포를 조사하기 위하여 배양하지 않고도 구강 스피로헤타를 분리할 수 있는 16S rRNA에 의거한 올리고뉴클레오타이드 소식자를 사용하였다. 성인성 치주염 환자 29명을 대상으로 한 사람당 6mm 이상의 탐침 깊이를 보이는 부위 4곳(실험군)과 3mm 이하의 탐침 깊이를 보이는 건강한 부위 1곳(대조 1군), 건강한 치주조직을 가진 학생 20명을 대상으로 한 사람당 5부위로부터 치은연하 치태를 채취한 뒤(대조 2군) 중합효소연쇄반응과 점상블롯보합결합법을 시행하였다. 소식자로는 구강 스피로헤타의보편 소식자 및 현재 배양이 되는 구강 스피로헤타중에서 T. denticola, T. pectinovorum, T. socranskii, T. vincentii, T. maltophilum에 대한 종 특이 소식자 TDEN, TPEC, TSOC, TVIN, TMAL과 현재 배양이 되지않은 구강스피로헤타중에서 I-VII군에 대한 군 특이 소식자 TRE I-TRE VII을 이용하여 다음과 같은 결론을 얻었다. 1. 위상차 현미경으로 본 결과는 실험군, 대조 1군에서 각기 91.37%, 14.28%의 구강스피로헤타가 관찰되었으며 대조 2군에서는 관찰되지 않았다. 2. 보편 소식자를 사용한 경우는 실험군, 대조 1군, 대조 2군에서 각기 98.27%, 46.42%, 22.0%의 구강 스피로헤타가 관찰되었다. 3. 특이 소식자를 사용한 경우는 실험군, 대조 1군, 대조 2군에서 각기 95.68%, 35.71%, 19.0%의 구강 스피로헤타가 관찰되었다. 4. 종 특이 소식자를 사용한 경우는 T. socranskii가 가장 많이 관찰되었으며 (81.89%), 그다음이 T. maltophilum(50.0%), T. vincentii(36.20%), T. denticola(13.79%)순이었고, 군 특이 소식자를 사용한 경우는 TREIV(85.34%), TRE II(77.58%), TREI(56.89%), TRE III(25.86%), TREVI(5.17%), TRE V(2.58%) 순이었다. 5. T. vincentii는 치주염에 이환된 부위에서만 관찰되었고, 건강한 부위에서는 관찰되지 않았다. 6. T. pectinovorum과 VII군에 속하는 구강스피로헤타는 어느 표본에서도 관찰되지 않았다. 이상의 결과에서 16S rRNA에 의거한 올리고뉴클레오타이드 소식자로 구강 스피로헤타의 성인성 치주염과의 연관성과 분리되지 않은 구강 스피로헤타를 확인하였으며, 인종 및 치주염의 형태에 따른 구강 스피로헤타의 분포 차이, T. vincentii의 병원성, 치료 전후의 구강 스피로헤타의 분포 변화등의 보다 세분화된 연구가 필요하다고 생각된다.

• 한국자원식물학회지
• /
• 제23권5호
• /
• pp.406-414
• /
• 2010

본 연구는 제주도에 자생하는 차나무과 식물을 대상으로 식품소재 또는 생약으로의 활용 방안을 모색하고자 angiotensin I converting enzyme(ACE) 저해활성, aminopeptidase N(APN) 저해활성 및 $\alpha$-amylase 저해활성을 조사하고, 항산화활성을 검색하고 TLC를 이용하여 분석하였다. ACE 저해활성은 후피향나무(수피)와 비쭈기나무(잎)에서 50% 이상의 저해활성을 보였으며, APN 저해활성은 비쭈기나무(잎과 수피)와 후피향나무(수피)에서만 양의 활성을 보였다. $\alpha$-amylase 저해활성은 동백나무(열매), 우묵사스레피나무(수피), 후피향나무(수피)와 차나무(줄기)에서 30% 이상의 저해활성을 보였다. 항산화활성은 비쭈기나무(수피), 후피향나무(수피), 차나무(잎)에서 30% 이상의 다소 높은 전자공여능을 나타내었다. 특히, 비쭈기나무(수피)는 dot-blot test에 의해 다른 종에 비해 활성이 높아 $1.25\;{\mu}g/ml$의 낮은 농도에서도 높은 항산화활성을 보였다. TLC 분석에 의해 비쭈기나무(수피)에서 EGC(Rf 0.26) 활성이 높았으며, 비쭈기나무, 우묵사스레피나무, 후피향나무의 수피에서 EGCG(Rf 0.09) 활성이 높게 검출되었다. 그리고, 표준 catechin류와는 다른 것으로 보이는 5개의 밴드(Rf 0.54, 0.46, 0.44, 0.16, 0.03)는 Folin-Ciocalteu Reagent 방법과 Ferric chloride-alcohol 방법을 이용하여 polyphenol류인 것으로 추정되었다. 이상의 결과를 토대로 사스레피나무를 제외한 차나무과 식물들은 생리활성이 높아 식품 소재 또는 생약으로의 활용이 가능할 것으로 보이며, 활성성분의 분리 및 동정 그리고 이들 물질을 이용한 임상실험 등 보다 심도있는 연구가 필요할 것으로 보인다.

• 원예과학기술지
• /
• 제17권1호
• /
• pp.7-10
• /
• 1999

배추의 약(anther) 발달에 관여하는 유전자를 분리, 특성을 구명하고, 궁극적인 목표로는 특이 발현을 조절하는 프로모터를 분리 작물의 웅성불임 유기 및 임성화복에 응용하고자 본 연구를 수행하였다. 배추 약 cDNA 유전자 은행으로부터 차별화 선별(differential screening)에 의해 얻어진 15개의 약특이 유전자들의 부분 염기서열 결정 후 기존에 보고된 유전자들과 상동성 검색을 통해 그 기능을 추정해 본 결과 cDNA clone BAN52는 polygalacturonase, BAN84는 ascorbate oxidase, BAN101은 $H^+-translocating$ ATPase, BAN2는 pectin esterase 유전자와 상동성을 보였으나, 그 외 유전자들은 상동성이 없어 그 기능을 추정할 수 없었다. 상기 유전자들의 발현시기를 꽃 발달 시기별로 조사한 결과 대부분의 유전자들이 (BAN5, 10, 33, 52, 57, 102, 103, 215, 229) 꽃봉오리 2.1mm 내외에서 발현이 시작하여 성숙화분까지 그 발현양이 증가하였고, BAN32, 54, 62, 84, 101는 꽃봉오리 3.9mm인 약발달 후기부터 나타났고, BAN87 유전자는 그 양은 적지만 약 발달 초기부터 후기까지 발현하였다.