• Title/Summary/Keyword: diversity analysis

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Genetic diversity analysis in Chinese miniature pigs using swine leukocyte antigen complex microsatellites

  • Wu, Jinhua;Liu, Ronghui;Li, Hua;Yu, Hui;Yang, Yalan
    • Animal Bioscience
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    • v.34 no.11
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    • pp.1757-1765
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    • 2021
  • Objective: The swine leukocyte antigen (SLA) gene group, which is closely linked and highly polymorphic, has important biomedical significance in the protection and utilization of germplasm resources. However, genetic polymorphism analyses of SLA microsatellite markers in Chinese miniature pigs are limited. Methods: Eighteen pairs of microsatellite primers were used to amplify the SLA regions of seven miniature pig breeds and three wild boar breeds (n = 346) from different regions of China. The indexes of genetic polymorphism, including expected heterozygosity (He), polymorphic information content (PIC), and haplotype, were analyzed. The genetic differentiation coefficient (Fst) and neighbor-joining methods were used for cluster analysis of the breeds. Results: In miniature pigs, the SLA I region had the highest numbers of polymorphisms, followed by the SLA II and SLA III regions; the region near the centromere had the lowest number of polymorphisms. Among the seven miniature pig breeds, Diannan small-ear pigs had the highest genetic diversity (PIC value = 0.6396), whereas the genetic diversity of the Hebao pig was the lowest (PIC value = 0.4330). The Fst values in the Mingguang small-ear, Diannan small-ear, and Yunnan wild boars were less than 0.05. According to phylogenetic cluster analysis, the South-China-type miniature pigs clustered into one group, among which Mingguang small-ear pigs clustered with Diannan small-ear pigs. Haplotype analysis revealed that the SLA I, II, and III regions could be constructed into 13, 7, and 11 common haplotypes, respectively. Conclusion: This study validates the high genetic diversity of the Chinese miniature pig. Mingguang small-ear pigs have close kinship with Diannan small-ear pigs, implying that they may have similar genetic backgrounds and originate from the same population. This study also provides a foundation for genetic breeding, genetic resource protection, and classification of Chinese miniature pigs.

Characterization analysis of Rongchang pig population based on the Zhongxin-1 Porcine Breeding Array PLUS

  • Dong Leng;Liangpeng Ge;Jing Sun
    • Animal Bioscience
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    • v.36 no.10
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    • pp.1508-1516
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    • 2023
  • Objective: To carry out a comprehensive production planning of the existing Rongchang pig population from both environmental and genetic aspects, and to establish a closed population with stable genetic diversity and strict pathogen control, it is necessary to fully understand the genetic background of the population. Methods: We genotyped 54 specific pathogen free (SPF) Rongchang pigs using the Zhongxin-1 Porcine Breeding Array PLUS, calculated their genetic diversity parameters and constructed their families. In addition, we also counted the runs of homozygosity (ROH) of each individual and calculated the value of inbreeding coefficient based on ROH for each individual. Results: Firstly, the results of genetic diversity analysis showed that the effective population size (Ne) of this population was 3.2, proportion of polymorphic markers (PN) was 0.515, desired heterozygosity (He) and observed heterozygosity (Ho) were 0.315 and 0.335. Ho was higher than He, indicating that the heterozygosity of all the selected loci was high. Secondly, combining the results of genomic relatedness analysis and cluster analysis, it was found that the existing Rongchang pig population could be divided into four families. Finally, we also counted the ROH of each individual and calculated the inbreeding coefficient value accordingly, whose mean value was 0.09. Conclusion: Due to the limitation of population size and other factors, the genetic diversity of this Rongchang pig population is low. The results of this study can provide basic data to support the development of Rongchang pig breeding program, the establishment of SPF Rongchang pig closed herd and its experimental utilization.

Diversity-Multiplexing Tradeoff Analysis for Half-Duplex Dynamic Decode-and-Forward Relay Protocol Using Multiple Antennas at a Single Node (단일 노드에서 다중 안테나를 사용하는 HD DDF Relay 프로토콜에 대한 DMT 분석)

  • Yim, Changho;Kim, Taeyoung;Yoon, Eunchul
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.38A no.5
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    • pp.426-435
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    • 2013
  • The diversity-multiplexing tradeoff (DMT) functions of three special half-duplex (HD) dynamic decode-and-forward (DDF) protocols with multiple antennas only at the source node, only at the destination node, and only at the relay node are analytically derived. The DMT functions of these three relay protocols are compared with one another and with those of the nonorthogonal amplify and forward (NAF) protocols.

Assessment and Management of Rice, Taro and Tropical Fruit Trees in Contrasting Agro-ecosystems in Vietnam

  • Hue, Nguyen Thi Ngoc;Jarvis, Devra;Sthapit, Bhuwon
    • The Korean Journal of Ecology
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    • v.27 no.1
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    • pp.21-26
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    • 2004
  • Understanding farmer household and community management of crop diversity is necessary in order to effectively strengthen the local plant genetic resources management system in Vietnam, Assessment and management for distribution of farmer's cultivars of rice, taro and tropical tree species were conducted in four different agro-ecological zones in Vietnam using participatory approaches, focus surveys, diversity fairs, agro-morphological field trials, isozyme analysis to understand why Vietnamese farmers grow diverse types of these crop cultivars, when and where these crops cultivars are grown and how farmers maintain and use them. Results showed significant differences in the extent, distribution and use pattern crop cultivars diversity in contrasting environments and between community farmer households. Seed system is an important role in the access and use of diversity in eco-geographical regions.

Performance of Relaying Protocols in 60 GHz Wireless Networks (60GHz 채널 환경에서의 릴레이를 이용한 중계 시스템 연구)

  • Lee, Yong-Wook;Kang, Dong-Hoon;Park, Hyo-Bae;Oh, Wang-Rok
    • Proceedings of the IEEK Conference
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    • 2009.05a
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    • pp.3-5
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    • 2009
  • In this paper, we exploit the cooperative diversity relay protocol to compensate for defects of wireless communication in 60 GHz. We derive and proof results of the numerical expressions versus various scenarios using the computer simulations. Optimal location and scaling factor of relay are presented through analysis of performances and compared between direct-path and time diversity transmission. Consequently, our results confirm that cooperative diversity relay protocol is an effective mean of enhancing the performance of wireless communication systems in 60 GHz.

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Linear Diversity Analysis for M-ary Square Quadrature Amplitude Modulation over Nakagami Fading Channels

  • Yoon, Dong-Weon;Chang, Dae-Ig;Kim, Nae-Soo;Woo, Hoon-Shik
    • ETRI Journal
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    • v.25 no.4
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    • pp.231-237
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    • 2003
  • We derive and analyze the exact closed-form expression for the average bit error probability (BEP) of M-ary square quadrature amplitude modulation (QAM) for diversity reception in frequency-nonselective Nakagami fading. A maximal ratio combining (MRC) diversity technique with independent or correlated fading cases are considered. Numerical results demonstrate error performance improvement with the use of MRC diversity reception. The presented new expressions offer a convenient way to evaluate the performance of M-ary square QAM with an MRC diversity combiner for various cases of practical interest.

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Genetic Diversity of Magra Sheep from India Using Microsatellite Analysis

  • Arora, R.;Bhatia, S.
    • Asian-Australasian Journal of Animal Sciences
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    • v.19 no.7
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    • pp.938-942
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    • 2006
  • Genetic diversity of Magra - a lustrous carpet wool breed of India, was investigated by means of 25 ovine microsatellite markers proposed by the Food and Agriculture Organization and the International Society for Animal Genetics (FAO-ISAG). All used microsatellites amplified well and exhibited polymorphisms. A wide range of genetic variability was observed as allele number from 3 (BM6506, OarCP20) to 10 (CSSM31), observed heterozygosity from 0.200 (BM6506) to 0.947 (OarHH35), expected heterozygosity from 0.368 (CSSM47) to 0.864 (BM1314) and Polymorphism Information Content (PIC) from 0.347 (CSSM47) to 0.849 (BM1314). This supported the utility of these microsatellite loci in the measurement of genetic diversity indices in Indian sheep too. Various average genetic variability measures viz., allele diversity (5.7), observed heterozygosity (0.597), expected heterozygosity (0.694) and mean PIC (0.648) values showed high genetic variability despite accumulated inbreeding as reflected by the high average inbreeding coefficient ($F_{IS}=0.159$) due to the unequal sex ratio of the breeding animals.

Political Diversity and Participation: A Systematic Review of the Measurement and Relationship

  • Jun, Najin
    • Asian Journal for Public Opinion Research
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    • v.1 no.2
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    • pp.103-127
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    • 2014
  • This study reviews existing research on the measurement of and the relationship between political diversity and political participation. It addresses the inconsistency in the arguments of existing studies researching the influence of political diversity on political participation. It attempts to find the cause in the variety of approaches to conceptualize and operationalize the two variables. As the measure of political diversity, political network heterogeneity and network attributes are discussed in detail in specific relation to political participation. As for political participation, an in-depth analysis of various ways to understand different forms of political involvement is presented. Implications for public opinion research are discussed.

Performance Analysis of 32-QAPM System with MRC Diversity in Rician Fading Channel

  • Chun, Jae Young;Kim, Eon Gon
    • Journal of information and communication convergence engineering
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    • v.14 no.4
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    • pp.227-232
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    • 2016
  • In this study, the performance of a 32-quadrature amplitude position modulation (QAPM) system is analyzed under a Rician fading channel condition when the maximal ratio combining (MRC) diversity technique is used in the receiver. The fading channel is modeled as a frequency non-selective slow Rician fading channel corrupted by additive white Gaussian noise (AWGN). QAPM is available to improve BER performance without amplifying transmit power, and MRC diversity makes the performance improvement of QAPM system even bigger by intentionally maximizing SNR. Error performances are shown for the 32-QAPM system and a 32-phase silence shift keying (PSSK) system in order to examine the effects of fading severity, for various values of the Rician parameter, K. The dependence of error rates on MRC diversity is also analyzed. The simulation results show that the BER performance of the 32-QAPM system is better than that of the 32-PSSK system under the above mentioned conditions.

Ownership Concentration, Board Education Diversity, and Environmental Accounting Disclosure in Kenyan Listed Firms. Moderation Approach

  • TARUS, John Kipngetich
    • Journal of Wellbeing Management and Applied Psychology
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    • v.3 no.1
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    • pp.1-10
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    • 2020
  • The purpose of this study was to examine the moderating effect of board education diversity on the relationship between ownership concentration and environmental accounting disclosure. The study was driven by stakeholder's theory. The longitudinal research design was adopted in the study. The study targeted 27 listed firms from 2008 to 2017. Panel regression analysis results indicated ownership concentration (β = -.131, ρ<.05) had a negative and significant effect on environmental disclosure in Kenyan firms. However, Board education diversity positively moderated the relationship between ownership concentration (β=.138, ρ<.05) and environmental accounting disclosure. Thus, board education diversity is an enhancing moderator in the relationship between ownership concentration and environmental accounting disclosure. The findings validate stakeholder theory's proposition. The study recommends that firms listed in the NSE ought to diffuse ownership concentration, and their boards should be well educated and experienced to enhance environmental accounting disclosure.