• Journal of Ecology and Environment
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• 제36권1호
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• pp.39-47
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• 2013

The expression of transgenic traits in genetically modified crops is sometimes associated with decreases in crop performance or fitness. These decreases in performance or fitness of transgenic plants in unfavourable conditions may provide valuable information about the ecological consequences of transgene escape. In a glasshouse trial, we tested the cost associated with resistance to herbicides by comparing the growth, yield, and competitive ability of transgenic rice with its parental non-transgenic line. This new line was developed for constitutive overexpression of protoporphyrinogen oxidase (PPO) to increase resistance to herbicides. We evaluated nine agronomic traits of transgenic and non-transgenic rice grown in a replacement series design over four densities. Competitive ability was also assessed between transgenic and non-transgenic plants by analyzing their relative yields based on biomass and seed weight data. Our results indicated that non-transgenic plants showed greater performance than did the transgenic plants when those genotypes were grown in mixtures. The non-transgenic rice plants exhibited superior competitive ability at certain combinations of planting densities and genotype proportions. These results suggest that PPO-herbicide resistance incurs some costs in plant performance and competitive ability.

• 한국정보과학회논문지:소프트웨어및응용
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• 제34권2호
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• pp.160-168
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• 2007

문서분류기의 개발에 있어 지도학습기법을 이용할 경우 많은 양의 사람에 의한 범주 부착 말뭉치가 필요하다. 그러나 이의 구축은 많은 시간과 노력을 필요로 한다. 최근 이러한 범주 부착 말뭉치 대신 원시말뭉치와 범주마다 약간의 씨앗 정보를 이용하여 학습을 수행하여 문서분류기를 개발하는 방법론이 제시되었다. 본 논문에서는 이 방법론 하에서 다른 연구에서의 결과보다 좋은 성능을 나타내는 비지도 학습 기법을 소개한다. 본 논문에서 제시하는 기법의 특징은 씨앗 단어에서 출발하여 평균상호정보를 이용하여 다른 대표단어 및 그들의 가중치를 학습한 다음, 정보검색에서 많이 사용하는 기술을 이용하여 그 가중치를 갱신하는 것이다. 그리고 이 과정을 반복 수행하여 최종적으로 높은 성능의 시스템을 개발 할 수 있음을 제시하였다.

• Journal of Microbiology and Biotechnology
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• 제22권8호
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• pp.1054-1058
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• 2012

In order to predict biologically significant attributes such as function from protein sequences, searching against large databases for homologous proteins is a common practice. In particular, BLAST and HMMER are widely used in a variety of biological fields. However, sequence-homologous proteins determined by BLAST and proteins having the same domains predicted by HMMER are not always functionally equivalent, even though their sequences are aligning with high similarity. Thus, accurate assignment of functionally equivalent proteins from aligned sequences remains a challenge in bioinformatics. We have developed the FEP-BH algorithm to predict functionally equivalent proteins from protein-protein pairs identified by BLAST and from protein-domain pairs predicted by HMMER. When examined against domain classes of the Pfam-A seed database, FEP-BH showed 71.53% accuracy, whereas BLAST and HMMER were 57.72% and 36.62%, respectively. We expect that the FEP-BH algorithm will be effective in predicting functionally equivalent proteins from BLAST and HMMER outputs and will also suit biologists who want to search out functionally equivalent proteins from among sequence-homologous proteins.

• 유기물자원화
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• 제5권2호
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• pp.29-37
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• 1997

높은 수분으로 인해 매립 또는 소각에 의한 처분이 부적절한 음식물 쓰레기를 퇴비화하여 자원 재순환형으로 사용할 경우, 자원, 환경, 농업문제에 이르기까지 다각적으로 많은 이점을 가져다 준다. 본 연구의 목적은 소규모 퇴비화 장치를 이용하여 초기 함수율을 달리하였을 때 음식물 쓰레기의 퇴비화 과정을 평가하고 미생물 첨가제를 개발하여 활성도를 평가함으로써 소규모 퇴비화 장치의 최적 운전 조건을 도출하는 것이다. 음식물 쓰레기의 무게 감량은 75~85%로써 대부분 수분의 증발에 기인하는 것으로 나타났으며, 초기 함수율을 25%, 45%, 60%로 달리하였을 때 건조상의 C/N비는 15.4, 14, 12.9로 퇴비 판정 기준에 부합하였다. 기존에 사용되던 상업용 균주에 대체할 수 있는 균주를 개발하여 활성도를 평가한 경우, 개발 균주인 PNU2가 $CO_2$농도 기준으로 우수한 것으로 나타났다. 그러나 화학적 분석에 의한 최종 완숙 단계를 결정하기에는 다소 미흡하였다.

• 한국미생물·생명공학회지
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• 제26권5호
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• pp.379-386
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• 1998

본 연구에서는 천연 항균물질의 개발 이용을 위해 황기 종자로부터 인체에 무해한 천연 항균 단백질을 ion exchange chromatography 및 gel filteration을 이용하여, 순수 분리하고 특성을 조사하였다. 황기종자로부터 추출한 천연 항균 단백질은 Aspergillus ocraceus, Penicillium expensum, P. digitatum, Botrytis cineria의 포자 발아 및 효모인 Candida albicans의 생육을 현저하게 저해하였으며 ammonium sulfate 포화도가 0.4일 때 단백질의 침전량이 122.6 $\mu\textrm{g}$/$m\ell$로 가장 많았고 항균력도 15.2 mm로 가장 높게 나타났다. 강력한 cation exchange chromatography인 Mono-S를 이용하여 FPLC에서 단백질을 분획하였을때 첫번째 peak에서 분획된 단백질군이 항균력을 보였으며 Superose 12HR gel filteration column을 이용하여 2차 분획 하였을 때 분자량이 19 kDa되는 단일 단백질만을 순수분리 할 수 있었다. 전기 영동한 polyacrylamide gel위에 곰팡이 포자를 중층하는 bio autography로 19 kDa 단백질 band의 항균력을 직접 확인하였으며 분리된 항균 단백질의 아미노 말단의 아미 노산 22잔기를 sequencing하고 thaumatin 및 zeamatin 유사 단백질들과 상동성을 측정한 결과 50%내외의 homology를 나타내었다. 분리된 항균 단백질은 곰팡이 균사가 성장하는 선단부위에 가장 먼저 침투하여 channel을 형성함으로 osmolysis를 일으켜 곰팡이의 생육을 억제하는 것으로 추측할 수 있었다.

• Journal of Microbiology and Biotechnology
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• 제25권9호
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• pp.1401-1409
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• 2015

The aim of this study was to develop a SYBR Green-based real-time PCR assay for the rapid, specific, and sensitive detection of Acidovorax avenae subsp. citrulli, which causes bacterial fruit blotch (BFB), a serious disease of cucurbit plants. The molecular and serological methods currently available for the detection of this pathogen are insufficiently sensitive and specific. Thus, a novel SYBR Green-based real-time PCR assay targeting the YD-repeat protein gene of A. avenae subsp. citrulli was developed. The specificity of the primer set was evaluated using DNA purified from 6 isolates of A. avenae subsp. citrulli, 7 other Acidovorax species, and 22 of non-targeted strains, including pathogens and non-pathogens. The AC158F/R primer set amplified a single band of the expected size from genomic DNA obtained from the A. avenae subsp. citrulli strains but not from the genomic DNA of other Acidovorax species, including that of other bacterial genera. Using this assay, it was possible to detect at least one genomeequivalents of the cloned amplified target DNA using 5 × 10⁰ fg/µl of purified genomic DNA per reaction or using a calibrated cell suspension, with 6.5 colony-forming units per reaction being employed. In addition, this assay is a highly sensitive and reliable method for identifying and quantifying the target pathogen in infected samples that does not require DNA extraction. Therefore, we suggest that this approach is suitable for the rapid and efficient diagnosis of A. avenae subsp. citrulli contaminations of seed lots and plants.

• 한국수산과학회지
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• 제18권2호
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• pp.180-194
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• 1985

The author investigated the history of oyster culture in Korea through examining old books and reports dealing with the fishery. Oysters have been produced in the all coastal areas in Korea, especially the center areas of production were the Hwangupo (Hamkyongbuk-do), Younghungman (Hamkyongnam-do), the estuary of Nakdonggang (Kyongsangnam-do), Kwangyangman, Haechangman, the estuary of Yongsangang (Chollanam-do), Yonghoto (Hwanghae-do) and the estuary of Uprockgang, where the large size oyster (more than 40cm in shell height) inhabited in form of groups. It was called by nine different names in the old times, Gul, Seukhwa and Moryeo were the most common names. The oyster was used as 46 kinds of medicinal stuff. The habitat forms of natural oyster can be distinguished to two types; one is that oyster is exposed to the air during the period of low tide (A-type), another is that oyster is not (B-type). The first oyster culture by the old books in Korea was started about 530 years ago as the bottom culture method derived from the A-type of oyster. After long years, the hanging culture method might have been started from the hint of the habitat form of B-type. The oyster culture in Korea developed based on the habitat forms of natural oyster at the biginning of 1900s. After World War II, the Korean government strongly recommded the laver farmers to culture oyster as relief measures. At that time, the stone culture method was mainly adopted. The quantity of oyster production is now about $15{\times}10^6{\sim}19{\times}10^6\;\frac{M}{T}$, and the half of oyster production including seed oyster is exported to the foreign countries.

• Journal of Microbiology and Biotechnology
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• 제17권11호
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• pp.1868-1874
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• 2007

We have developed a robotic system for an automated parallel cell cultivation process that enables screening of induction parameters for the soluble expression of recombinant protein. The system is designed for parallelized and simultaneous cultivation of up to 24 different types of cells or a single type of cell at 24 different conditions. Twenty-four culture vessels of about 200 ml are arranged in four columns${\times}$six rows. The system is equipped with four independent thermostated waterbaths, each of which accommodates six culture vessels. A two-channel liquid handler is attached in order to distribute medium from the reservoir to the culture vessels, to transfer seed or other reagents, and to take an aliquot from the growing cells. Cells in each vessel are agitated and aerated by sparging filtered air. We tested the system by growing Escherichia coli BL21(DE3) cells harboring a plasmid for a model protein, and used it in optimizing protein expression conditions by varying the induction temperature and the inducer concentration. The results revealed the usefulness of our custom-made cell cultivation robot in screening optimal conditions for the expression of soluble proteins.

• 한국약용작물학회지
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• 제20권5호
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• pp.387-392
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• 2012

This study was carried out to identify Korean ginseng cultivars using peptide nucleic acid (PNA) microarray. Sixty-seven probes were designed based on nucleotide variation to distinguish Korean ginseng cultivars of Panax ginseng. Among those PNA probes, three (PGB74, PGB110 and PGB130) have been developed to distinguish five Korean ginseng cultivars. Five Korean ginseng cultivars were denoted as barcode numbers depending on their fluorescent signal patterns of each cultivar using three probe sets in the PNA microarray. Five Korean ginseng cultivars, Chunpoong, Yunpoong, Gopoong, Gumpoong and Sunpoong, were simply denoted as '111', '222', '211', '221' and '122', respectively. This is the first report of PNA microarray which provided an objective and reliable method for the authentication of Korean ginseng cultivars. Also, the PNA microarray will be useful for management system and pure guarantee in ginseng seed.

• 농업과학연구
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• 제41권2호
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• pp.107-112
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• 2014

Coloring agents in food materials plays important roles in the development of attractive products as well as in the functionality of food such as antioxidant or vitamin supplementation. Carrot has been used as an orange coloring agent in the decoration of food but also a major source of vitamin A complex. Though orange has been considered a typical color of carrot, the Rainbow carrot has been developed recently, which exhibit the various colors such as red, pale yellow, purple, orange or their mixtures. After categorization onto 8 groups by their colors, vitamin A complex (${\beta}$-carotene, lycopene and lutein) and soluble sugars (glucose, fructose, and sucrose) have been analyzed in carrots. The ${\beta}$-carotene was abundant in the groups of orange (Group-O) or groups with the orange color (group-OP, and group-YOP). The content of lycopene content was exclusively high in the red color carrot (group-R). The highest lutein contents were observed from the yellow-purple (group-YP) group. Meanwhile, little amounts of lycopene and ${\beta}$-carotene were observed in yellow-purple (group-YP) nor yellow (group-Y) on yellow (group-Y). Among the reducing sugars in 'rainbow carrots', the amount of sucrose was two times higher than those of fructose and glucose. However, the content of glucose, fructose and sucrose as well as the total reducing sugars did not differ between color groups suggesting little variations on their tastes.