• Title/Summary/Keyword: cytochrome c oxidase subunit I (COI)

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First Reliable Record of the Snubnose Pompano, Trachinotus blochii (Carangidae, Perciformes) from Busan and Jejudo Island of Korea (부산과 제주 연안에서 채집된 전갱이과 한국 첫기록종, Trachinotus blochii)

  • Maeng Jin Kim;Jeong-Ho Park;Hyeon-Jeong Kim;Jin-Koo Kim
    • Korean Journal of Ichthyology
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    • v.35 no.4
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    • pp.372-377
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    • 2023
  • This is the first report of Trachinotus blochii (Perciformes: Carangidae) from Korea. Single specimen (89.8 mm SL) was collected by seine fishing from the coastal waters of Busan on 13 September, 2023 and two specimens (29.53~30.78 mm SL) were collected by scoop net from Jejudo Island, Korea. This species is distinguishable from the most similar species, Trachinotus blochii as follows: it has the no black spots (vs. black spots in T. baillonii), 21~25 dorsal fin rays (vs. 18~20), and 20~24 anal fin rays (vs. 16~18). In order to confirm their taxonomic status, their mitochondrial DNA cytochrome c oxidase subunit I sequences were obtained and compared with those of carangid species recorded in the NCBI database. As a result, it was perfectly matched to T. blochii, and differed from T. baillonii (genetic distance=5.46%). We propose a Korean name, "Mu-jeom-mae-ga-ri", for the species.

One New Species and One Unrecorded Species of the Genus Coleophora (Lepidoptera, Coleophoridae) from Korea

  • Koo, Jun-Mo;Baldizzone, Giorgio;Kim, Jae-Dong;Park, Kyu-Tek;Cho, Soowon
    • Animal Systematics, Evolution and Diversity
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    • v.36 no.3
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    • pp.193-201
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    • 2020
  • Family Coleophoridae, commonly known as "casebearers", is one of the largest families of Gelechioidea (Lepidoptera), with more than 1,450 described species worldwide, but it has been poorly known in Korea, with only 32 known species of the genus Coleophora Hübner, 1822. Here we present Coleophora fasciella Koo & Baldizzone, sp. nov., a new species to science, and C. mayrella (Hübner, [1813]), an unrecorded species in Korea. Diagnostic characteristics with descriptions of the genitalia are provided with photos of adults, wing venations, and genitalia of both sexes for the species. Mitochondrial cytochrome c oxidase subunit I(COI) barcode sequences for the two species are also provided.

First Record of the Interstitial Annelid Pharyngocirrus uchidai (Annelida: Saccocirridae) from Korea, Confirmed by Topotypic DNA Barcoding Data from Japan

  • Park, Jiseon;Kajihara, Hiroshi;Jung, Jongwoo
    • Animal Systematics, Evolution and Diversity
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    • v.35 no.1
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    • pp.33-36
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    • 2019
  • The marine interstitial annelid Pharyngocirrus uchidai(Sasaki, 1981) has been only known from Japan. In this study, we report the occurrence of P. uchidai for the first time in four localities along the eastern coast of Korea: Bukmyeon, Gamchu, Gase, and Oeongchi. Species identification was confirmed by comparison of DNA barcoding sequences with morphological examination from the type locality, Oshoro, Japan. We generated a total of 25 sequences of a partial segment (580 bp) of the cytochrome c oxidase subunit I gene (COI), representing five specimens from each locality. Maximum intra-specific variation was 1.2% in terms of Kimura two-parameter (K2P) distance, observed between two individuals each from Gamchu (i.e., between two specimens from the single locality), Gamchu and Oeongchi, Gamchu and Oshoro, and Oeongchi and Oshoro. On the other hand, an identical haplotype was found in all the five localities, substantiating our species identification for the Korean populations. Inter-specific K2P distance between P. uchidai and an unidentified Saccocirrus sp. from Canada (based on public database entries) was 22.4-23.4%.

Dicyema sphyrocephalum (Phylum Dicyemida: Dicyemidae) isolated from Korean common octopus Callistoctopus minor in Korea

  • Whang, Ilson;Lee, Beomseok;Krishnan, Rahul;Nakajima, Hiroaki;Furuya, Hidetaka;Shin, Sang Phil
    • Journal of Veterinary Science
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    • v.21 no.6
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    • pp.86.1-86.8
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    • 2020
  • Background: Dicyemids are parasites found in the renal sac of cephalopods. The first species of dicyemid was found from kidneys of the Korean common octopus Callistoctopus minor. Objectives: This study aimed to identify the dicyemid and investigate the effect on renal sac of host. Methods: In this study, we compared the morphological characteristics of isolate to dicyemids (Dicyema sphyrocephalum, Dicyema clavatum, and Dicyema dolichocephalum) reported from C. minor in Japan. We compared the 18S ribosomal RNA (rDNA) and cytochrome c oxidase subunit I (COI) sequences of isolate to the sequences of D. shyrocephalum and D. clavatum. The infected octopuses renal tissues were histologically compared with the tissues of uninfected individuals. Results: The morphological characteristic of this isolated species corresponds to D. sphyrocephalum. The sequences similarities of 18S rDNA and COI gene of isolate are 99.7% and 98.1% with D. sphyrocephalum. We observed morphological changes in the epithelia folds of kidney at the dicyemids attached areas. Conclusions: The present study identified the isolate as D. sphyrocephalum and this is the first report of dicyemid species from Republic of Korea. Further studies on the effects of dicyemids on growth and health status of cephalopods will be needed.

A Newly Recorded Sea Cucumber of the Genus Psolus (Holothuroidea: Dendrochirotida: Psolidae) from the East Sea of Korea

  • Lee, Taekjun;Shin, Sook
    • Animal Systematics, Evolution and Diversity
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    • v.33 no.3
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    • pp.195-199
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    • 2017
  • A sea cucumber was collected from Gonghyeonjin in the East Sea of Korea at a depth of 50 m on 22 June 2011 and was identified as Psolus phantapus (Strussenfelt, 1765). This species belongs to the family Psolidae of the order Dendrochirotida based on morphological characteristics and mitochondrial cytochrome c oxidase subunit I sequence analysis. Psolus phantapus, which widely distributes in the Arctic and North Atlantic Oceans, is newly recorded in the Korean fauna. Two Psolus species including the previously reported P. squamatus are recorded in the East Sea of Korea.

New Record of Brama dussumieri (Pisces: Bramidae) from Korea, as Revealed by Morphological and Molecular Analyses

  • Lee, Woo Jun;Kim, Jin-Koo
    • Fisheries and Aquatic Sciences
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    • v.18 no.3
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    • pp.311-316
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    • 2015
  • Ten specimens of Brama dussumieri (family Bramidae) were collected from waters off Jeju Island, Busan, and Gangneung, Korea, during 2013-2014. The specimens were characterized by having 58-64 lateral line scales and 13-15 gill rakers. An analysis of 567 base pair sequences of mitochondrial DNA cytochrome c oxidase subunit I showed that sequences in our ten specimens are concordant with those of B. dussumieri from the USA, India, and Japan, although with slight differences (genetic distance = 0.000-0.018). Brama dussumieri was distinguished from the most similar species, Brama japonica, by the number of lateral line scales (57-65 in B. dussumieri vs. 65-75 in B. japonica) and the number of gill rakers (13-15 in B. dussumieri vs. 17-20 in B. japonica). We propose the new Korean name "Wae-sae-da-rae" for B. dussumieri in Korea.

A Report on Five New Records of Nudibranch Molluscs from Korea

  • Jung, Daewui;Lee, Jongrak;Kim, Chang-Bae
    • Animal Systematics, Evolution and Diversity
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    • v.30 no.2
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    • pp.124-131
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    • 2014
  • The Korean nudibranch faunal study has been conducted since 2011 and five species including Dermatobranchus otome Baba, 1992, Mexichromis festiva (Angas, 1864), Noumea nivalis Baba, 1937, Hoplodoris armata (Baba, 1993), and Okenia hiroi (Baba, 1938) were newly reported with re-descriptions and figures. Also, Noumea purpurea Baba, 1949 was re-described with illustrations because previous records for this species were given without a description. Two congeneric species in the genus Noumea could be distinguished by ground color, dorsal markings, color of the mantle edge and gills, and mantle and dorsal marking. In addition, mitochondrial cytochrome c oxidase subunit I (COI) sequences of five species were provided for further molecular identification study. Consequently, a total of 43 species have been reported for the Korean nudibranch fauna.

Molecular Identification and Morphological Comparison of Juveniles of Two Collichthys Species (Pisces: Sciaenidae) from the Yellow Sea (황해 강달이속(Collichthys) 치어 2종의 분자동정 및 형태비교)

  • Lee, Soo Jeong;Kim, Jin-Koo
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.47 no.1
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    • pp.79-83
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    • 2014
  • Thirty five juveniles belonging to the genus Collichthys were collected using a bag net at Gang-wha-do, in the eastern Yellow Sea, between July and September, 2012, and identified using combined genetic and morphological methods. We sequenced 316 base pairs of mitochondrial DNA cytochrome c oxidase subunit I of 35 individuals, of which 22 individuals were identified as Collichthys niveatus (12.9-47.6 mm in SL) and 13 as Collichthys lucidus (13.4-40.3 mm SL). Morphologically, the number of occipital crests, an important taxonomic character during the adult stage, could not distinguish the two species during the juvenile stage, but the shape of the first anal fin spine clearly distinguished the two species even among juveniles.

A Newly Recorded Sea Star of the Genus Luidia (Asteroidea, Paxillosida, Luidiidae) from Jeju Island, Korea, Based on Morphological and Molecular Analysis

  • Lee, Taekjun;Shin, Sook
    • Animal Systematics, Evolution and Diversity
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    • v.34 no.4
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    • pp.208-214
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    • 2018
  • The genus Luidia belongs to the family Luidiidae in the order Paxillosida. It is a common littoral taxon, and the depth range of the Korean fauna is generally 0-100 m. However, specimens of Luidia were collected from Jeju Island in Korea at 150-160 m depth and identified as Luidia sagamina sagamina $D{\ddot{o}}derlein$, 1920. This species is determined by morphological characteristics and mitochondrial cytochrome c oxidase subunit I sequence analysis. Luidia sagamina sagamina is a very rare sea star in worldwide and it only collected previously from Sagami Bay, Japan, and is newly reported in Korea. Four species of Luidia, including L. s. sagamina, are recorded in the Korean fauna.

A New Report of Prionospio kirrae (Annelida: Spionidae) from Korea

  • Lee, Geon Hyeok;Min, Gi-Sik
    • Animal Systematics, Evolution and Diversity
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    • v.38 no.2
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    • pp.91-97
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    • 2022
  • Spionid polychaete Prionospio kirrae Wilson, 1990 is newly reported from the Yellow Sea in Korea. This species is characterized by four pairs of branchiae, which are apinnate on chaetigers 2-4 and pinnate on chaetiger 5, a caruncle extending to the posterior end of chaetiger 1, the presence of a distinctly high dorsal crest on chaetiger 11, and the presence of tridentate hooded hooks with rounded apical teeth. Sequences of partial mitochondrial cytochrome c oxidase subunit I (COI), 16S ribosomal DNA(16S rDNA), and the nuclear 18S ribosomal DNA(18S rDNA) of the species are determined from Korean specimens.