• Title/Summary/Keyword: cluster value

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Ecological Attributes by Forest Types in the Natural Forest of Mt. Odae

  • Choi, Yeong Hwa;Kim, Ji Hong;Chung, Sang Hoon
    • Journal of Forest and Environmental Science
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    • v.33 no.1
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    • pp.66-73
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    • 2017
  • This study was conducted to evaluate the ecological attributes of forest types which were classified by cluster analysis in the natural forest of Mt. Odae on the basis of the vegetation data (232 sampling points) from the point-quarter sampling methods. For the classified types, the species composition was expressed by importance value to describe the stand structure and the species diversity was quantified using the Shannon's diversity index. Recognized forest types were 1) Quercus mongolica-Pinus densiflora-Betula ermanii forest type, 2) Mixed mesophytic forest type, 3) Q. mongolica forest type, 4) B. ermanii forest type. Species diversity indices of total and overstory were highest in the Mixed mesophytic forest type (3.465 and 2.942), and lowest in the B. ermanii forest type (0.118 and 0.832). In addition to that, Q. mongolica-P. densiflora-B. ermanii forest type was calculated as 3.226 and 2.565, and Q. mongolica forest type was calculated as 2.776 and 1.218 in total and overstory, respectively. It was considered that after the P. densiflora and B. ermanii first invaded and site condition became good, Q. mongolica-P. densiflora-B. ermanii forest type was dominated by Q. mongolica. Mixed mesophytic forest type showed the most stable stand structure with various species distributed uniformly. Q. mongolica forest type would preserve the present stand status for a while, and the B. ermanii in B. ermanii forest type would be pressed by other species over time.

Genome scan linkage analysis identifies a major quantitative trait loci for fatty acid composition in longissimus dorsi muscle in an F2 intercross between Landrace and Korean native pigs

  • Park, Hee-Bok;Han, Sang-Hyun;Yoo, Chae-Kyoung;Lee, Jae-Bong;Kim, Ji-Hyang;Baek, Kwang-Soo;Son, Jun-Kyu;Shin, Sang-Min;Lim, Hyun-Tae;Cho, In-Cheol
    • Asian-Australasian Journal of Animal Sciences
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    • v.30 no.8
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    • pp.1061-1065
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    • 2017
  • Objective: This study was conducted to locate quantitative trait loci (QTL) influencing fatty acid (FA) composition in a large $F_2$ intercross between Landrace and Korean native pigs. Methods: Eighteen FA composition traits were measured in more than 960 $F_2$ progeny. All experimental animals were genotyped with 165 microsatellite markers located throughout the pig autosomes. Results: We detected 112 QTLs for the FA composition; Forty seven QTLs reached the genome-wide significant threshold. In particular, we identified a cluster of highly significant QTLs for FA composition on SSC12. QTL for polyunsaturated fatty acid on pig chromosome 12 (F-value = 97.2 under additive and dominance model, nominal p-value $3.6{\times}10^{-39}$) accounted for 16.9% of phenotypic variance. In addition, four more QTLs for C18:1, C18:2, C20:4, and monounsaturated fatty acids on the similar position explained more than 10% of phenotypic variance. Conclusion: Our findings of a major QTL for FA composition presented here could provide helpful information to locate causative variants to improve meat quality traits in pigs.

Spatial and Temporal Variation Characteristics between Water Quality and Pollutant Loads of Yeong-il Bay (II) - Mutual Variation between Inflowing Pollutant Loads and Water Quality - (영일만 유입오염부하량과 수질의 시${\cdot}$공간적 변동특성(II) - 유입오염부하량과 수질의 상호거동 -)

  • YOON HAN-SAM;LEE IN-CHEOL;RYU CHEONG-RO
    • Journal of Ocean Engineering and Technology
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    • v.17 no.5 s.54
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    • pp.32-38
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    • 2003
  • This study investigates the distribution characteristics and relationship of water quality, and analyzes the spatial and temporal variation and distribution of the pollutant loads at Yeong-il Bay. The results of these analysis, the concentrations of nutrient loads (T-N and T-P), both appeared to be at the maximum value in November, while most small values were taken in May for the T-N, and in August for the T-P. For COD, the maximum concentration was in August, which has much precipitation during the same season, T-N was at the mean, and T-P was at the minimum value. Using the cluster analysis to develop the division of the sea basin by the dendrogram, before and after construction of Pohang New-port, the variation characteristics of water quality of Yeong-il Bay were discussed. The in flowing pollutant loads were transported to the landward by the high-density salinity water volume of the bottom layer therefore, it formed nutrient trap or coastal trapping areas of the pollutant load. By this mechanism, it is clear that the water volume with high-density nutrient exists on both sides of the Pohang New-port. Thus, the sea basins increasing concentration of the pollutant load at Yeong-il Bay are most prevalent at Hyeong-san estuary, the Pohang Old, and New-port. To improve water quality of this sea basin, the reduction of these nutrients loads should be the highest priority.

Transcriptional Analysis of Genes Involved in Ectopic Sporulation in Streptomyces griseus (Streptomyces griseus의 특이적 포자형성에 관여하는 유전자의 전사량 분석)

  • Chi, Won-Jae
    • Microbiology and Biotechnology Letters
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    • v.44 no.4
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    • pp.563-570
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    • 2016
  • Two Streptomyces griseus strains, a wild-type strain and an A-factor-dependent transcriptional activator mutant strain harboring multiple copies of a gene, dasA, that encodes a substrate-binding protein of the ATP-binding cassette transporter, showed severe ectopic sporulation of young substrate hyphae in response to glucose. The effect of dasA overexpression on the ectopic sporulation of Streptomyces strains was evaluated by comparing the transcriptomes of the strain harboring multiple copies of dasA and a strain harboring empty vector. By DNA microarray, 4 genes (SGR794, SGR2469, SGR3656, and SGR3657) and 3 clusters (SGR795-797, SGR2377-2378, and SGR6997-6998) were differentially expressed by more than 2-fold in S. griseus strains harboring dasA. The DNA microarray result was validated by low-resolution S1 nuclease mapping.

Estimation of Drought Rainfall by Regional Frequency Analysis using L and LH-Moments(I) - On the Method of L-Moments - (L 및 LH-모멘트법과 지역빈도분석에 의한 가뭄우량의 추정(I) - L-모멘트법을 중심으로 -)

  • 이순혁;윤성수;맹승진;류경식;주호길
    • Magazine of the Korean Society of Agricultural Engineers
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    • v.45 no.5
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    • pp.97-109
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    • 2003
  • This study is mainly conducted to derive the design drought rainfall by the consecutive duration using probability weighted moments with rainfall in the regional drought frequency analysis. It is anticipated to suggest optimal design drought rainfall of hydraulic structures for the water requirement and drought frequency of occurrence for the safety of water utilization through this study. Preferentially, this study was conducted to derive the optimal regionalization of the precipitation data that can be classified by the climatologically and geographically homogeneous regions all over the regions except Cheju and Ulreung islands in Korea. Five homogeneous regions in view of topographical and climatological aspects were accomplished by K-means clustering method. Using the L-moment ratio diagram and Kolmogorov-Smirnov test, generalized extreme value distribution was confirmed as the best fitting one among applied distributions. At-site and regional parameters of the generalized extreme value distribution were estimated by the method of L-moments. Design drought rainfalls using L-moments following the consecutive duration were derived by the at-site and regional analysis using the observed and simulated data resulted from Monte Carlo techniques. Relative root-mean-square error (RRMSE), relative bias (RBIAS) and relative reduction (RR) in RRMSE for the design drought rainfall derived by at-site and regional analysis in the observed an simulated data were computed and compared. In has shown that the regional frequency analysis procedure can substantially more reduce the RRMSE. RBIAS and RR in RRMSE than those of at-site analysis in the prediction of design drought rainfall. Consequently, optimal design drought rainfalls following the regions and consecutive durations were derived by the regional frequency analysis.

Word Sense Similarity Clustering Based on Vector Space Model and HAL (벡터 공간 모델과 HAL에 기초한 단어 의미 유사성 군집)

  • Kim, Dong-Sung
    • Korean Journal of Cognitive Science
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    • v.23 no.3
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    • pp.295-322
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    • 2012
  • In this paper, we cluster similar word senses applying vector space model and HAL (Hyperspace Analog to Language). HAL measures corelation among words through a certain size of context (Lund and Burgess 1996). The similarity measurement between a word pair is cosine similarity based on the vector space model, which reduces distortion of space between high frequency words and low frequency words (Salton et al. 1975, Widdows 2004). We use PCA (Principal Component Analysis) and SVD (Singular Value Decomposition) to reduce a large amount of dimensions caused by similarity matrix. For sense similarity clustering, we adopt supervised and non-supervised learning methods. For non-supervised method, we use clustering. For supervised method, we use SVM (Support Vector Machine), Naive Bayes Classifier, and Maximum Entropy Method.

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A Study on the Quantitative Rehabilitation Extent Evaluation Method Using High-Order Function Waveform Analysis of EMG Signal (근전도 신호의 고차함수분석법을 이용한 정량적 재활정도 평가에 관한 연구)

  • Moon, D.J.;Kim, J.Y.;Noh, S.C.;Choi, H.H.
    • Journal of rehabilitation welfare engineering & assistive technology
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    • v.8 no.4
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    • pp.305-312
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    • 2014
  • In this study, in order to quantitatively confirm walking rehabilitation degree, we analyzed EMG pattern simulated abnormal gait and normal gait by applying a curve fitting. We calculated the suitable high-order function for EMG signal, and classified them into 5 groups by using cluster analysis. Depending on the distance from normal pattern group, we listed the pattern group and then the distribution of each variables were confirmed. The amplitude-decreased pattern was the most similar to the normal pattern, but the reversed pattern showed the lowest similarity. Due to the smaller overlapping range, the distribution of the groups were possible to classify using the value of variable. The standard deviation of each term coefficient was compared to indicate the quantitative rehabilitation extent, and the higher value was confirmed as the pattern is close to the normal pattern. Consequently, the representation of quantitative rehabilitation extent is expected to contribute to the more effective rehabilitation method study.

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Microbial Diversity in the Soil Damaged by a Forest Fire (훼손된 산불토양의 미생물다양성)

  • Jung, Young-Ryul;Song, In-Geun;Kim, Jin-Yong;Lee, Sin-Geun;Kim, Young-Jun
    • Journal of the Korea Organic Resources Recycling Association
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    • v.13 no.2
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    • pp.85-90
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    • 2005
  • Changes of biochemical and genetic diversity of microbial communities in the soil damaged by a forest fire were analyzed. Soil samples were collected from Gangnung area where a forest fire was broken out in 2000. Two soil samples were from the burnt area, one from the naturally restoring soil (NS) and the other from the artificially restoring soil (AS). A normal, unaffected soil sample (US) was also included as a control. For the biochemical diversity, each sample was directly applied to the BIOLOG system, and the cluster analysis through a statistic process (SPSS) were performed. Genetic diversity was analyzed through DGGE using 16S-rDNA amplified from soil DNA. Among the samples tested, top soils of US and NS, and sub soil of NS revealed more than 70% of the similarity value in biochemical diversity. In case of genetic diversity, however, the similarity value was found to be in the range of 53% to 68% in all samples. This result indicates that the biochemical diversity is not always correlated with the genetic diversity in the analysis of microbial communities.

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A Study on the Fitness of Korea's Hub-Port Strategy in Northeast Asia by SCM (공급사슬관리에 의한 동북아 거점항만전략의 적합성에 관한 연구)

  • Lee In-Soo;Ahn Ki-Myung;Kim Hyun-Duk
    • Journal of Navigation and Port Research
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    • v.29 no.8 s.104
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    • pp.709-714
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    • 2005
  • The purpose of this research is to verify the strategic fitness and relevance of the hub port strategy by SCM in Northeast Asia and to find a method to be a hub-port with a competitive edge. The fitness of the hub port development strategy is analysed by the structural equation model. The essential results of the research show that minimizing lead time from arrival of ship to inland transport and maximizing logistic services of each stage are important to provide optimal logistic service. And value-added port supply chain strategy is highly co-related with all the parts of port operation system, port transport system, distribution park and port information system. It shows that: various value added logistic service activity is more important than lowing cost; inland multimodal system should be rightly connected; distribution park should be connected to industry park to be a port cluster; and port information system should be developed.

Clustering Algorithm for Extending Lifetime of Wireless Sensor Networks (무선 센서 네트워크의 수명연장을 위한 클러스터링 알고리즘)

  • Kim, Sun-Chol;Choi, Seung-Kwon;Cho, Yong-Hwan
    • Journal of the Korea Society of Computer and Information
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    • v.20 no.4
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    • pp.77-85
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    • 2015
  • Recently, wireless sensor network(WSN) have been used in various fields to implement ubiquitous computing environment. WSN uses small, low cost and low power sensors in order to collect information from the sensor field. This paper proposes a clustering algorithm for energy efficiency of sensor nodes. The proposed algorithm is based on conventional LEACH, the representative clustering protocol for WSN and it prolongs network and nodes life time using sleep technique and changable transmission mode. The nodes of the proposed algorithm first calculate their clustering participation value based on the distance to the neighbor nodes. The nodes located in high density area will have clustering participation value and it can turn to sleep mode. Besides, proposed algorithm can change transmission method from conventional single-hop transmission to multi-hop transmission according to the energy level of cluster head. Simulation results show that the proposed clustering algorithm outperforms conventional LEACH, especially non-uniformly deployed network.