• 제목/요약/키워드: cluster analyses

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Analysis of Genetic Diversity of Korean Accessions of the Genus Acorus Using RAPD Markers and NIR Spectroscopy

  • Lee, Ja-Hyun;Kim, In-Seon;Lee, Seong-Gene;Rim, Kwang-Sub;Kim, Sung-Gil;Han, Tae-Ho
    • 원예과학기술지
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    • 제29권3호
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    • pp.232-239
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    • 2011
  • The genus Acorus is known as an indigenous medicinal plant. Genetic diversity of thirteen accessions of A. calamus and eight of A. gramineus, with an accession of Colocasia antiquorum and two of Iris pseudacorus as outgroups, were evaluated using RAPD markers for cluster analysis and principal coordinate analysis, and NIR spectroscopic profiles for principal component analysis.A total of 371 polymorphic bands were obtained by using the selected 12 random primers. The genetic distances were estimated from 0.03 to 0.31 within A. calamus and from 0.03 to 0.51 within A. gramineus. The dendrogram and three-dimensional plot separated the accessions into four distinct groups (A. calamus, A. gramineus, C. antiquorum, and I. pseudacorus). Moreover, for the diversity among genus Acorus, eleven A. calamus accessions, one A. gramineus accession, and two I. pseudacorus accessions were non-destructively analyzed from their leaves by NIR spectroscopy, which discriminated Acorus accessions like the RAPD analysis. Interestingly, thirteen accessions of A. calamus were clustered into two groups based on RAPD and NIR analyses, which indicates that there are two ecotypes of A. calamus in Korea. An accession (CZ) of A. calamus with yellow stripe on leaves was closely grouped with another (CX) at a genetic distance (GD) of 0.03, which shows that the stripe trait might be generated by chimeric mutation. The genetic distance between A. calamus and A. gramineus was revealed to be farthest from 0.80 to 0.88 GD. In genus Acorus the genetic diversity and genetic variation were identified by using RAPD marker technique and non-destructive NIRs.

한국 남해의 요각류 및 모악류의 분포와 수괴특성 (The Distributions of Copepods and Chaetognaths in the Southern Waters of Korea and Their Relationship to the Characteristics of Water Masses)

  • 박주석;이삼석;강영실;이병돈;허성회
    • 한국수산과학회지
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    • 제23권3호
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    • pp.245-252
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    • 1990
  • 한국 남해에 분포하는 요각류와 모악류의 수괴 지표성종으로써의 가치를 이용하여 수괴의 특성을 구명하기 위하여 1988년 2, 4 및 8월에 한국 남해안28개 정점에서 NORPAC net를 이용하여 수직 채집한 동물성 부유생물을 분석하였다. 요각류와 모악류중 한국 남해의 주요 수괴 지표성종으로써 Acartia clausi, Centropages abdominalis는 연안 저온성종으로, Sagitta crassa는 연안성종으로, Pleuromamma gracilis, Undinula darwini, Calocalanus plumulosus, Calanopia elliptica와 Sagitta enflata는 난류 외양성종으로, 그리고 Temora discaudata, Centropages furcatus는 난류성종인 것으로 밝혀졌으며, 이들 종의 분포와 수심 30m에서 수온과를 비교 분석하였다. 또한 Cluster분석을 실시하여 수괴의 계절적 변동을 파악하였다. 2월에는 크게 2개의 해역으로 남해 연안 해역과 남해 외양역으로 대별되었으며 4월에는 크게 4개의 해역으로 대별되었다. 8월에는 크게 3개의 해역으로 대별되었으며, 쓰시마난류가 연안으로 강하게 영향을 미침을 나타내었다.

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대학생의 쇼핑가치에 따른 신용카드인식 및 신용카드관리행동에 관한 연구 (A Study for the Perception and Management Behaviors on Credit Cards According to the Shopping Value Types of College Students)

  • 서인주
    • 가족자원경영과 정책
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    • 제13권2호
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    • pp.129-151
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    • 2009
  • The first purpose of this study was to reveal the types of shopping value of college students. The second purpose was to examine the change in the perception and management behaviors related to credit cards according to the types of shopping value. The third purpose was to examine the effects of shopping value on perception and management behaviors on credit cards. The data were collected from 392 college students in Seoul by a self-administered questionnaire. Analyses including frequency, mean, factor analysis, Cronbach's alpha, Pearson's correlation analysis, Crosstabulation analysis, analysis of variance, K-means Cluster analysis and Multiple linear regression were conducted using SPSS WIN12.0. The major findings were as follows. First, college students can be categorized into 3 types of shopping values by K-means Cluster analysis of 14 items. The groups were entitled the hedonistic shopping value, the utilitarian shopping value, and the saving shopping value. Second, positive perception and management behaviors related to credit cards were different depending on the types of shopping value. The hedonistic shopping value group had a higher level of positive perception of credit cards and a lower level of credit card management, compared with the other groups. The saving shopping value group had higher levels of both positive perception and management of credit cards. Among the three groups, the utilitarian shopping group had the lowest level of positive perception of credit cards, despite having ahigher level of credit card management. Lastly, the most effective variance on credit card management was the utilitarian shopping value. These results suggest that a healthy shopping value is very important for having a healthy perception and management of credit cards, because shopping value is a critical variance to affect perception and management of credit cards.

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국내 주요 산영클러스더별 상대적 효율성 분석 및 생산구조 비교 (Analysis of the Relative Efficiency and Competitiveness of Production Structure for the Industrial Clusters in Korea)

  • 박추환
    • 산업클러스터
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    • 제2권1호
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    • pp.44-60
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    • 2008
  • 본 연구에서는 국내 주요 7개 산업클러스터에 대해 자료포락분석(DEA)을 통한 상대적 효율성과 생산구조를 비교.평가하였다. 2004년 혁신클러스터로 지정된 울산, 창원, 구미, 원주, 반월시화, 광주, 군산 7개 지역을 대상으로 분석한 결과 울산, 원주를 제외한 5개 지역이 모두 산업클러스터 도입이후 효율적인 상태로 개선되어가고 있음을 보이고 있다. 또한 과거의 비효율성의 원인은 모두 투입과 산출의 물리적인 관계를 나타내는 기술적 요인이 아닌 생산규모의 적절성을 나타내는 규모의 요인에 의한 것임을 알 수 있었다. 또한 노동과 성장, 자본과 성장, 연구개발과 성장간의 포지셔닝 분석을 통해 각 산업클러스터별 생산구조를 비교.평가한 결과 상대적으로 반월시화 클러스터와 구미클러스터의 생산구조가 노동, 자본, 연구개발 면에서 모두 우수한 것으로 나타났다. 반면 원주와 울산, 군산클러스터의 경우 상대적으로 노동, 자본 면에서 생산구조가 취약한 것으로 평가되었다.

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새로운 패러다임의 지역 산업클러스터 성공전략: 오프라인과 온라인의 수렴 (A New Paradigm for Success Strategies of Industrial Clusters: Convergence of Traditional and Online Businesses)

  • 이준섭
    • 한국산업정보학회논문지
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    • 제12권3호
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    • pp.69-85
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    • 2007
  • 본 연구에서는 국내의 산업클러스터에서 영업활동을 하고 있는 국내 오프라인기업과 외국계 오프라인 기업을 대상으로 경쟁전략의 선호도를 분석하였다. 또한 오프라인기업들이 온라인 영업활동을 도입하면서 판매네트워크 및 정보네트워크와 관련하여 기대하고 있는 효익요인을 파악하고, 이 요인들이 경쟁전략 모색에 어떠한 영향을 주는지 분석하였다. 온라인 정보입수의 용이성, 온라인 중개, 온라인 유통, 온라인 의사소통, 온라인 정보/지식 공유 등 다섯 개의 기대효익 요인이 도출되었으며, 이러한 기대요인은 적어도 한 가지 이상의 경쟁전략에 유의한 영향을 미친다는 결과가 나타났으며, 국내기업과 외국계기업간의 전략적 선호도, 온라인 영업활동 도입에 따른 기대효익 등에 대한 비교 분석에 있어서는 두 집단 간에 큰 차이가 없다는 결과를 보여주고 있다.

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리눅스 기반의 클러스터 VOD서버와 내장형에 클라이언트의 구현 (Implementation of a Cluster VOD Server and an Embedded Client based on Linux)

  • 서동만;방철석;이좌형;김병길;정인범
    • 한국정보과학회논문지:컴퓨팅의 실제 및 레터
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    • 제10권6호
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    • pp.435-447
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    • 2004
  • VOD 시스템에서는 한정된 자원을 이용하여 많은 사용자에게 안정적인 QoS(Quality of Service)를 제공하는 것이 중요하다. 실제 구현 환경에서 QoS의 문제점들을 분석하기 위하여 본 연구에서는 소스 공개 플랫폼인 리눅스를 기반으로 하는 클러스터형 VOD 서버와 내장형 클라이언트 시스템을 구현하였다 서버에서는 MPEG 미디어 데이타의 병렬 처리와 부하 균등, VCR 기능을 구현하였다. VOD 사용자에게 보다 친밀한 인터페이스를 제공하기 위하여 일반 TV를 단말로 사용하였고 VCR 기능들을 제공하기 위하여 내장형 보드를 사용하였다. 본 논문에서는 사용자들의 다양한 요구사항에서의 성능 측정을 바탕으로 VOD 시스템의 성능 한계 일인들을 평가한다. 또한, 분석된 자료를 근거로 VOD 시스템에서의 가용 메모리와 가용 네트워크 대역폭을 기준으로 하는 동적 진입 제어의 방법을 제안한다. 제안된 방법은 시스템 자인의 효율성을 증가시켜 더욱 많은 사용자들에게 QoS가 보장되는 미디어 스트림을 제공한다.

Microbial composition and diversity of the long term application of organic material in upland soil

  • An, Nan-Hee;Park, Jong-Ho;Han, Eun-Jung;Hong, Sung-Jun;Kim, Yong-Ki;Jee, Hyeong-Jin
    • 한국유기농업학회지
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    • 제19권spc호
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    • pp.190-193
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    • 2011
  • Organic and chemical fertilizer amendments are an important agricultural practice for increasing crop yields. In order to maintain the soil sustainability, it is important to monitor the effects of fertilizer applications on the shift of soil microorganism, which control the cycling of many nutrients in the soils. Here, culture-dependent and culture-independent approaches were used to analyze the soil microorganism and community structure under six fertilization treatments, including green manure, rice straw compost, rapeseed cake, pig mature compost, NPK +pig mature compost, NPK and control. Both organic and chemical fertilizers caused a shift of the cultural microorganism CFUs after treatments. Bacterial CFUs of the organic fertilization treatments were significantly higher than that of chemical fertilization treatments. The DGGE profiles of the bacterial communities of the samples showed that the green manure treatment was a distinct difference in bacterial community, with a greater complexity of the band pattern than other treatments. Cluster analyses based on the DGGE profile showed that rice straw compost and pig mature compost had a similar banding pattern and clustered together firstly. Rapeseed cake, NPK, NPK +pig manure compost and control clustered together in other sub-cluster and clearly distinguished from green manure.

Water and soil properties in organic and conventional paddies throughout the rice cultivation cycle in South Korea

  • Lee, Tae-Gu;Lee, Chang-Gu;Hong, Seung-Gil;Kim, Jin-Ho;Park, Seong-Jik
    • Environmental Engineering Research
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    • 제24권1호
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    • pp.45-53
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    • 2019
  • Water and soil properties in paddy fields subjected to organic and conventional farming were characterized over the rice cycle in South Korea. To achieve the goals of this study, we sampled and analyzed soil and water from 24 organic paddy plots and 11 conventional paddy plots in March, May, August, and October 2016. The results were analyzed using statistical analyses, including analysis of variance (ANOVA), cluster analysis, and principal component analysis. The ANOVA results showed that water content (WC), electrical conductivity (EC), organic matter (OM), and available phosphorus ($P_2O_5$) in soil varied significantly (p < 0.01) depending on the farming method. Higher OM, EC, and $P_2O_5$ of soil were observed in the conventional paddies than in the organic paddies. All soil properties, except pH and ammonium, depended on seasonal variation. Cluster analysis revealed that soil properties in May were distinctly separated from those in other seasons mainly due to basal fertilization. The principal component analysis distinguished the soil properties in different seasons, but such a distinction was not observed between the soil properties in organic and conventional paddies. Low contents of WC, OM, and total N were observed in March. High concentrations of nitrate and total P were observed in May, but these were low in August and October. The soils from October were also characterized by high concentrations of EC and $P_2O_5$. These results indicate that the sampling time for soil and water can significantly influence the evaluation of soil properties with different farming methods.

Genetic diversity analysis in Chinese miniature pigs using swine leukocyte antigen complex microsatellites

  • Wu, Jinhua;Liu, Ronghui;Li, Hua;Yu, Hui;Yang, Yalan
    • Animal Bioscience
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    • 제34권11호
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    • pp.1757-1765
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    • 2021
  • Objective: The swine leukocyte antigen (SLA) gene group, which is closely linked and highly polymorphic, has important biomedical significance in the protection and utilization of germplasm resources. However, genetic polymorphism analyses of SLA microsatellite markers in Chinese miniature pigs are limited. Methods: Eighteen pairs of microsatellite primers were used to amplify the SLA regions of seven miniature pig breeds and three wild boar breeds (n = 346) from different regions of China. The indexes of genetic polymorphism, including expected heterozygosity (He), polymorphic information content (PIC), and haplotype, were analyzed. The genetic differentiation coefficient (Fst) and neighbor-joining methods were used for cluster analysis of the breeds. Results: In miniature pigs, the SLA I region had the highest numbers of polymorphisms, followed by the SLA II and SLA III regions; the region near the centromere had the lowest number of polymorphisms. Among the seven miniature pig breeds, Diannan small-ear pigs had the highest genetic diversity (PIC value = 0.6396), whereas the genetic diversity of the Hebao pig was the lowest (PIC value = 0.4330). The Fst values in the Mingguang small-ear, Diannan small-ear, and Yunnan wild boars were less than 0.05. According to phylogenetic cluster analysis, the South-China-type miniature pigs clustered into one group, among which Mingguang small-ear pigs clustered with Diannan small-ear pigs. Haplotype analysis revealed that the SLA I, II, and III regions could be constructed into 13, 7, and 11 common haplotypes, respectively. Conclusion: This study validates the high genetic diversity of the Chinese miniature pig. Mingguang small-ear pigs have close kinship with Diannan small-ear pigs, implying that they may have similar genetic backgrounds and originate from the same population. This study also provides a foundation for genetic breeding, genetic resource protection, and classification of Chinese miniature pigs.

Genetic parameters for worm resistance in Santa Inês sheep using the Bayesian animal model

  • Rodrigues, Francelino Neiva;Sarmento, Jose Lindenberg Rocha;Leal, Tania Maria;de Araujo, Adriana Mello;Filho, Luiz Antonio Silva Figueiredo
    • Animal Bioscience
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    • 제34권2호
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    • pp.185-191
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    • 2021
  • Objective: The objective of this study was to estimate the genetic parameters for worm resistance (WR) and associated characteristics, using the linear-threshold animal model via Bayesian inference in single- and multiple-trait analyses. Methods: Data were collected from a herd of Santa Inês breed sheep. All information was collected with animals submitted to natural contamination conditions. All data (number of eggs per gram of feces [FEC], Famacha score [FS], body condition score [BCS], and hematocrit [HCT]) were collected on the same day. The animals were weighed individually on the day after collection (after 12-h fasting). The WR trait was defined by the multivariate cluster analysis, using the FEC, HCT, BCS, and FS of material collected from naturally infected sheep of the Santa Inês breed. The variance components and genetic parameters for the WR, FEC, HCT, BCS, and FS traits were estimated using the Bayesian inference under the linear and threshold animal model. Results: A low magnitude was obtained for repeatability of worm-related traits. The mean values estimated for heritability were of low-to-high (0.05 to 0.88) magnitude. The FEC, HCT, BCS, FS, and body weight traits showed higher heritability (although low magnitude) in the multiple-trait model due to increased information about traits. All WR characters showed a significant genetic correlation, and heritability estimates ranged from low (0.44; single-trait model) to high (0.88; multiple-trait model). Conclusion: Therefore, we suggest that FS be included as a criterion of ovine genetic selection for endoparasite resistance using the trait defined by multivariate cluster analysis, as it will provide greater genetic gains when compared to any single trait. In addition, its measurement is easy and inexpensive, exhibiting greater heritability and repeatability and a high genetic correlation with the trait of resistance to worms.