• The Plant Pathology Journal
• /
• 제22권2호
• /
• pp.139-146
• /
• 2006

The 3' region of Potato virus X (PVX) has the 74 nt 3'-nontranslated region (NTR) that is conserved among all potexviruses and contains several cis-acting elements for minus-strand and plus-strand RNA accumulation. Three stem-loop structures (SL1-SL3), especially formation of SL3 and U-rich sequence of SL2, and near upstream elements in the 3' NTR were previously demonstrated as important cis-acting elements. To Investigate the binding of these cis-acting elements within 3' end with host protein, we used the electrophoretic mobility shift assays (EMSA) and UV-cross linking analysis. The EMSA with cellular extracts from tobacco and RNA transcripts corresponding to the 150 nt of the 3' end of PVX RNA showed that the 3' end of PVX formed complexes with cellular proteins. The specificity of protein binding was confirmed through competition assay by using with 50-fold excess of specific and non-specific probes. We also conducted EMSA with RNAs containing various mutants on those cis-acting elements (${\Delta}10$10, SL3B, SL2A and ${\Delta}21$; J Mol Biol 326, 701-720) required for efficient PVX RNA accumulation. These analyses supported that these cis-acting elements are required for interaction with host protein(s). UV-cross linking analysis revealed that at least three major host proteins of about 28, 32, and 42 kDa in mass bound to these cis-elements. These results indicate that cis-acting elements from 3' end which are important for minus and plus-strand RNA accumulation are also required for host protein binding.

• 생명과학회지
• /
• 제33권1호
• /
• pp.34-42
• /
• 2023

환경 스트레스 신호 인지부터 스트레스 반응 유전자의 발현에 이르는 신호전달 네트워크에 있어서, 스트레스 반응 프로모터의 cis-조절 요소와 거기에 결합하는 다양한 전사인자는 환경 스트레스에 대한 식물의 적응을 조절한다. 애기장대 AP2/ERF 전사인자 패밀리 중 그룹 VII ERF는 RAP2.12, RAP2.2, RAP2.3, AtERF73/HRE1, AtERF71/HRE2 유전자를 포함하며, 저산소 스트레스 반응에서 중요한 역할을 하는 것으로 알려져 있다. 본 연구에서는 HRE1 프로모터의 저산소 반응 부위를 동정하였다. 이를 위해 1,000 bp, 800 bp, 600 bp, 400 bp, 200 bp, 100 bp, 그리고 50 bp HRE1 프로모터 부위를 포함하는 벡터를 제작하여 프로모 터 활성을 분석한 결과, -200에서 -100 프로모터 부위가 HRE1의 저산소 반응에서 중요함을 확인하였다. HRE1의 -200에서 -100 프로모터 부위에는 저산소 반응 cis-조절 요소로 알려진 ERF-결합 부위와 DOF-결합 부위가 존재하는데, 이는 HRE1의 발현이 ERF 전사인자와 DOF 전사인자에 의해 조절될 수 있음을 시사한다. 전체적으로, 본 연구를 통해 HRE1 의 저산소 스트레스 반응에는 -200에서 -100 프로모터 부위에 존재하는 cis-조절 요소가 중요한 역할을 한다는 것을 확인하였다.

• Journal of Applied Biological Chemistry
• /
• 제64권1호
• /
• pp.39-48
• /
• 2021

가뭄은 작물의 성장과 생산성을 방해하는 비 생물학적 스트레스 중 하나다. 비 생물학적 스트레스에 대응하기 위해서는 식물이 불리한 환경 조건에서 스트레스에 나타내는 분자 조절 네트워크를 이해해야 한다. 비 생물학적 스트레스 (가뭄에 대응)에 대처할 수 있는 조합을 선별하기 위한 실험에서 스트레스 조건에서만 발현되는 5개의 가뭄 스트레스 유도성 프로모터를 선별하였으며, 이 중 36개의 cis-regulatory element를 선별하였다. 그 결과 가뭄 스트레스에서만 발현되는 유전자의 프로모터에서 cis-regulatory element를 새롭게 조합하여 미세 제어 조절을 할 수 있는 2 개의 합성프로모터(BL1, BL2)를 제작하였다. 합성프로모터를 포함한 형질전환식물(BL1-GUS, BL2-GUS)의 분석은 합성프로모터가 건조 조건에서 형질전환식물 내의 GUS 유전자의 발현을 증가시키는 것을 통하여 확인하였다. 또한 Transient activation assay를 통해 DREB1A와 DREB2C에 의해 합성프로모터가 활성화되는 것도 확인하였다. 이러한 결과는 가뭄 특이적인 cis-regulatory element의 조합에 의해 제작한 합성프로모터가 다양한 비 생물학적 스트레스에 반응하고, 식물의 성장 지연을 유발하지 않고 스트레스에 효과적으로 대응할 수 있을 것이라 예상할 수 있다.

• 한국식물병리학회:학술대회논문집
• /
• 한국식물병리학회 2003년도 정기총회 및 추계학술발표회
• /
• pp.14-14
• /
• 2003

Potato virus X (PVX), the type member of Potexvirus genus, is a flexuous rod-shaped virus containing a single-stranded (＋) RNA. Infection by PVX produces genomic plus- and minus-strand RNAs and two major subgenomic RNAs (sgRNAs). To understand the mechanism for PVX replication, we are studying the cis- and/or trans-acting elements required for RNA replication. Previous studies have shown that the conserved sequences located upstream of two major sgRNAs, as well as elements in the 5' non-translated region (NTR) affect accumulation of genomic and sg RNAs. Complementarity between sequences at the 5' NTR and those located upstream of two major sgRNAs and the binding of host protein(s) to the 5' NTR have shown to be important for PVX RNA replication. The 5 NTR of PVX contains single-stranded AC-rich sequence and stem-loop structure. The potential role(s) of these cis-elements on virus replication, assembly, and their interaction with viral and host protein(s) during virus infection will be discussed based on the data obtained by in vitro binding, in vitro assembly, gel shift mobility assay, host gene expression profiling using various mutants at these regions.

• Bulletin of the Korean Chemical Society
• /
• 제30권4호
• /
• pp.853-856
• /
• 2009

Highly polycrystalline copper indium diselenide (CuInSe2, CIS) thin films were deposited on glass or ITO glass substrates by two-stage metal organic chemical vapor deposition (MOCVD) at relatively mild conditions, using Cuand In/Se-containing precursors. First, pure Cu thin film was prepared on glass or ITO glass substrates by using a single-source precursor, bis(ethylbutyrylacetate)copper(II) or bis(ethylisobutyrylacetato)copper(II). Second, on the resulting Cu films, tris(N,N-ethylbutyldiselenocarbamato)indium(III) was treated to produce CuInSe2 films by MOCVD method at 400 ${^{\circ}C}$. These precursors are very stable in ambient conditions. In our process, it was quite easy to obtain high quality CIS thin films with less impurities and uniform thickness. Also, it was found that it is easy to control the stoichiometric ratio of relevant elements on demands, leading to Cu or In rich CIS thin films. These CIS films were analyzed by XRD, SEM, EDX, and Near-IR spectroscopy. The optical band gap of the stoichiometric CIS films was about 1.06 eV, which is within an optimal range for harvesting solar radiation energy.

• Molecules and Cells
• /
• 제41권4호
• /
• pp.342-350
• /
• 2018

Flowering time is determined by florigens. These genes include, Heading date 3a (Hd3a) and Rice FT 1 (RFT1) in rice, which are specifically expressed in the vascular tissues of leaves at the floral transition stage. To study the cis-regulatory elements present in the promoter region of Hd3a, we generated transgenic plants carrying the 1.75-kb promoter fragment of Hd3a that was fused to the ${\beta}$-glucuronidase (GUS) reporter gene. Plants expressing this construct conferred a vascular cell-specific expression pattern for the reporter gene. However, GUS was expressed in leaves at all developmental stages, including the early seedling stage when Hd3a was not detected. Furthermore, the reporter was expressed in roots at all stages. This suggests that the 1.75-kb region lackings cis-elements that regulate leaf-specific expression at the appropriate developmental stages. Deletion analyses of the promoter region indicated that regulatory elements determining vascular cell-specific expression are present in the 200-bp region between -245 bp and -45 bp from the transcription initiation site. By transforming the Hd3a-GUS construct to rice cultivar 'Taichung 65' which is defective in Ehd1, we observed that Ehd1 is the major regulatory element that controls Hd3a promoter activity.

• BMB Reports
• /
• 제50권4호
• /
• pp.194-200
• /
• 2017

Eukaryotic gene expression is precisely regulated at all points between transcription and translation. In this review, we focus on translational control mediated by the 3'-untranslated regions (UTRs) of mRNAs. mRNA 3'-UTRs contain cis-acting elements that function in the regulation of protein translation or mRNA decay. Each RNA binding protein that binds to these cis-acting elements regulates mRNA translation via various mechanisms targeting the mRNA cap structure, the eukaryotic initiation factor 4E (eIF4E)-eIF4G complex, ribosomes, and the poly (A) tail. We also discuss translation-mediated regulation of mRNA fate.

• Plant Biotechnology Reports
• /
• 제4권1호
• /
• pp.29-35
• /
• 2010

NPR1 is a positive regulator of systemic acquired resistance in Arabidopsis and rice. Expression of the rice gene OsNPR1 is induced by salicylic acid (SA). To identify the region of the OsNPR1 promoter involved in response to SA, we carried out deletion mutagenesis of the region 1005 bp upstream of the OsNPR1 start codon. Ciselement analysis revealed that the OsNPR1 promoter contains W-boxes and ASF1 motifs, both of which are known to be functional cis-elements of the WRKY and bZIP proteins, respectively. The deletion constructs 1005:LUC and 752:LUC, were induced by up to 4.3- and 3.8-fold, respectively, following SA treatment, suggesting that W-boxes and ASF1 motifs may play an important role in the strong induction of these constructs by SA. Using mutation analysis, we also showed that both the W-box and ASF1 motif are necessary for SA-induced expression of OsNPR1.

• 한국식물병리학회:학술대회논문집
• /
• 한국식물병리학회 2004년도 The 2004 KSPP Annual Meeting & International Symposium
• /
• pp.69-71
• /
• 2004

See Full Text

• The Plant Pathology Journal
• /
• 제28권1호
• /
• pp.75-80
• /
• 2012

$Potato$ $virus$ $X$ (PVX) contains $cis$-acting elements including stem-loop 1 (SL1) RNA at the 5' region; SL1 is conserved among all potexviruses. The SL1 at the positive-sense RNA, SL1(+), is required for PVX RNA replication, cell-to-cell movement, and translation. Previous research demonstrated that SL1(+) RNA also serves as the origin of assembly for encapsidation of PVX RNA. To identify the essential sequences and/or regions for capsid protein (CP) subunit recognition within SL1(+) RNA, we used electrophoretic mobility shift assays (EMSA), UV cross-linking, and yeast three-hybrid analyses. The EMSA and UV cross-linking analyses with PVX CP subunits and RNA transcripts corresponding to the SL1(+) RNA showed that the SL1(+) RNA formed complexes with CP subunits. We also conducted EMSA and yeast three-hybrid analyses with RNAs containing various mutations of SL1(+) RNA elements. These analyses indicated that SL1(+) RNA is required for the interaction with PVX CP and that the RNA sequences located at the loop C and tetra loop of the SL1(+) are crucial for CP binding. These results indicate that, in addition to being important for RNA accumulation, the SL1(+) RNA from the 5' region of the PVX genome is also required for specific binding of PVX CP.