• 제목/요약/키워드: circular RNA

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Safety Assessment of Lactiplantibacillus (formerly Lactobacillus) plantarum Q180

  • Kwon, Yoo Jin;Chun, Byung Hee;Jung, Hye Su;Chu, Jaeryang;Joung, Hyunchae;Park, Sung Yurb;Kim, Byoung Kook;Jeon, Che Ok
    • Journal of Microbiology and Biotechnology
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    • 제31권10호
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    • pp.1420-1429
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    • 2021
  • The safety of the probiotic strain Q180, which exerts postprandial lipid-lowering effects, was bioinformatically and phenotypically evaluated. The genome of strain Q180 was completely sequenced, and single circular chromosome of 3,197,263 bp without any plasmid was generated. Phylogenetic and related analyses using16S rRNA gene and whole-genome sequences revealed that strain Q180 is a member of Lactiplantibacillus (Lp., formerly Lactobacillus) plantarum. Antimicrobial resistance (AMR) genes were bioinformatically analyzed using all Lp. plantarum genomes available in GenBank, which showed that AMR genes are present differently depending on Lp. plantarum strains. Bioinformatic analysis demonstrated that some mobile genetic elements such as prophages and insertion sequences were identified in the genome of strain Q180, but because they did not contain harmful genes such as AMR genes and virulence factor (VF)- and toxin-related genes, it was suggested that there is no transferability of harmful genes. The minimum inhibition concentrations of seven tested antibiotics suggested by the European Food Safety Authority guidelines were slightly lower than or equal to the microbiological cut-off values for Lp. plantarum. Strain Q180 did not show hemolytic and gelatinase activities and biogenic amine-producing ability. Taken together, this study demonstrated the safety of strain Q180 in terms of absence of AMR genes and VF- and toxin-related genes as a probiotic strain.

Effects of taurine supplementation in low fish meal diets for red seabream (Pagrus major) in low water temperature season

  • Gunathilaka, G.L.B.E.;Kim, Min-Gi;Lee, Chorong;Shin, Jaehyeong;Lee, Bong-Joo;Lee, Kyeong-Jun
    • Fisheries and Aquatic Sciences
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    • 제22권10호
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    • pp.23.1-23.10
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    • 2019
  • Background: Taurine is a conditional essential amino acid for fish. A study was conducted to investigate the compensating effect of supplemental taurine in diets for red seabream (Pagrus major) on impaired growth performance by fish meal (FM) replacement with soybean meal (SM) at low water temperature (14.15 ± 1.95 ℃). Methods: A FM-based diet was considered as a high FM diet and three other experimental diets were formulated to replace FM with SM by 20, 35, or 50% (HFM, SM20, SM35, or SM50, respectively) without taurine and other four diets were formulated by adding 1% taurine to the diets (HFM-T, SM20-T, SM35-T, or SM50-T, respectively). Triplicate groups of fish (108.9 ± 1.58 g/fish) were distributed into 24 polyvinyl circular tanks (215 L) with 20 fish per tank and fed one of the diets to satiation for 20 weeks. Results: Growth performance and feed utilization of red seabream were significantly improved by the dietary taurine supplementation. SM20-T and SM35-T diets increased fish growth that are comparable to HFM diet. Feed intake, feed conversion ratio, and protein efficiency ratio of fish fed SM20-T and SM35-T diets were not significantly different from those of HFM group. Dietary taurine supplementation in each FM replaced group numerically increased innate immunity of the fish. Lysozyme and superoxide dismutase activities were significantly decreased in fish fed SM35, SM50, and SM50-T diets compared to those of fish fed HFM diet while they were not significantly lower in SM20, SM20-T, SM35, and SM35-T groups. Glutathione peroxidase activity was significantly lower in fish group fed SM50 diet while SM50-T group did not significantly lower compared to that of HFM group. The relative expression level of hepatic IGF-1 mRNA was improved in fish fed taurine-supplemented diets compared to their respective SM diets. Conclusions: Growth performance and feed utilization of red seabream can be accelerated or restored by 1% taurine supplementation when they are fed high level of SM up to 35% in diets during low water temperature season.

신종 해양미생물 Planococcus sp. 107-1T의 분류학적 특성 분석 (Characterization of the Novel Marine Bacterium Planococcus sp. 107-1T)

  • 김동균;정현경;김영옥;공희정;남보혜;김주원;김영삼
    • 한국수산과학회지
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    • 제55권5호
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    • pp.612-624
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    • 2022
  • A novel Gram-positive, motile, non-spore forming aerobic marine bacterium, designated 107-1T was isolated from tidal mud collected in Gyehwa-do, South Korea. Cells of strain 107-1T were short rod or coccoid, oxidase negative, catalase positive and grew at 10-40℃ (with optimum growth at 25-30℃). It utilized menaquinones MK-7 and 8 as its respiratory quinones and its major fatty acids were anteiso-C15:0 (37.9%), iso-C16:0 (14.9%), and iso-C14:0 (10.8%). Phylogenetic analysis based on 16S rRNA gene sequences revealed a distinct clade containing strain 107-1T and close species Planococcus ruber CW1T(98.52% sequence similarity), P. faecalis KCTC 33580T(97.67%), P. kocurii ATCC 43650T(97.48%), P. donghaensis DSM 22276T(97.47%), and P. halocryophilus DSM 24743T(97.37%). Strain 107-1T contains one circular chromosome (3,513,248bp in length) with G+C content of 44.6 mol%. Estimated ranges for genome to genome distance, average nucleotide identity, and average amino acid identity comparing strain 107-1T with close taxa were 20.3-34.8%, 77.9-86.9%, and 73.6-92.8%, respectively. Based on polyphasic analysis, strain 107-1T represents a novel species belonging to the genus Planococcus.

파형강관을 이용한 지하매설물용 뒤채움재 설계 및 시공성 평가 (Evaluation of Construction Operation and Design Properties of CLSM for Corrugated Pipe in Underground)

  • 이관호;박재헌
    • 한국도로학회논문집
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    • 제8권2호
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    • pp.63-74
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    • 2006
  • 원형지하매설관의 경우 관의 하단부의 다짐이 매우 어렵고, 또한 다짐효율이 떨어져서 지하매설물의 안정을 저감시키고, 이로 인해 각종 파손이 발생하는 문제점을 가지고 있다. 이러한 문제점을 해결할 수 있는 하나의 대안으로 저강도 콘크리트 개념을 지반공학에 적용하여 만들어진 유동성 채움재(CLSM)를 이용하는 것이다. 본 연구에서는 같은 조건에서 일반모래 뒤채움재 방식사를 이용한 유동성뒤채움재 및 현장발생토사를 이용한 유동성 뒤채움재 종류를 변화시킨 3가지 사례에 대한 PENTACON -3D 유한요소 프로그램을 이용하여 수치해석을 실시하였다. 또한 현장발생토사의 파형강관용 유동성 뒤채움재로서 현장 적용성을 평가하기 위하여 현장실험을 수행하였다. 현장시험 및 해석을 실시한 결과 뒤채움재로 유동성 채움재를 사용하는 경우에 일반모래를 사용한 경우보다 관의 수직 수평변위 및 지표면변위를 감소시키는 것으로 해석되었다. 이는 유동성 채움재의 특징 중 자기수평능력과 자기강도발현특성에 의해 양생이 진행됨에 따라 파형강관 주변의 유동성 채움재가 굳어 강성화되고,이것이 파형강관과의 일체화를 통한, 파형강관의 단면강도를 증진시켜준 효과로 해석할 수 있다. 그리고 뒤채움재의 종류에 따른 파형강관의 토압특성은 뒤채움재로 일반모래를 대체하여 유동성 채움재를 사용한 경우에 관에 작용하는 수직 수평토압이 거의 0에 가까운 값으로 현저히 작아짐을 알 수 있었다. 이는 현장발생토사 재활용 유동성 뒤채움재를 사용하는 것이 지하매설관에 발생하는 각종 파손을 감소시키고, 안정성을 높이는 하나의 대안으로 판단된다.타내었다.catenella 성장률도 감소하였다. A. catenella는 $10^{-3}\sim0.1{\mu}M$ 셀레니움 농도에서 A. catenella 세포밀도가 증가하고 대수성 장기 후반(the end of exponential phase)이 길어짐을 관찰 하였다. 경우 유의한 형태적 차이는 관찰되지 않았으나 당뇨군의 근위곱슬세관 분분에 세포 자연사가 중점적으로 발견되었다.사료로 전환하기에 적당하다고 할 수 있겠다.%로 향상된 결과를 얻을 수 있었다.하는 경향을 나타내었고, $30^{\circ}C$ 실험구의 경우에는 시간의 지남에 따라 유의적으로 활성이 낮아지는 경향을 나타내었다. HSP70 mRNA의 발현은 대조군($20^{\circ}C$)과 비교하여 $25^{\circ}C$ 48 h째 실험구를 제외한 모든 실험구에서 유의적으로 높게 발현되었다. 이상의 결과로, $20^{\circ}C$에서 순치된 시볼트전복은 급격한 수온 스트레스에 대해 많은 스트레스 요인으로 작용하는 것으로 나타났으며, 수온 스트레스에 대한 생리학적 방어 기작이 분자 레벨인 HSP70 mRNA에서는 신속히 발현되어 스트레스에 대처하지만, SOD나 CAT와 같은 항산화 효소의 발현은 다소 늦게 작용하는 것으로 나타났다. 그러나, 시간의 지남에 따라 $5^{\circ}C$ 내외의 스트레스와 저수온 스트레스의 경우에는 비교적 안정화되는 것으로 보여지며, $10^{\circ}C$

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Melanogenesis regulatory constituents from Premna serratifolia wood collected in Myanmar

  • WOO, SO-YEUN
    • 한국자원식물학회:학술대회논문집
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    • 한국자원식물학회 2019년도 춘계학술대회
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    • pp.21-22
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    • 2019
  • Melanin is a mixture of pigmented biopolymers synthesized by epidermal melanocytes that determine the skin, eye, and hair colors. Melanocytes produce two different kinds of melanin, eumelanin (dark brown/black insoluble pigments found in dark skin and dark hair and pheomelanin (lighter red/yellow). The biological role of melanin is to prevent skin damage by ultraviolet (UV) radiation. However, the overproduction or deficiency of melanin synthesis could lead to serious dermatological problems, which include melasma, melanoderma, lentigo, and vitiligo. Therefore, regulating melanin production is important to prevent the pigmentation disorders. Myanmar has a rich in natural resources. However, the chemical constituents of these natural resources in Myanmar have not been fully investigated. In the effort to search for compounds with anti-melanin deposition activity from Myanmar natural resources, five plants were collected in Myanmar. Extracts of these collected five plants were tested for anti-melanin deposition activity against a mouse melanoma cell line (B16-F10) induced with ${\alpha}$-melanocyte-stimulating hormone (${\alpha}$-MSH) and 3-isobutyl-1-methylxanthine (IBMX), and their anti-melanin deposition activities were compared with the positive control, arbutin. Among the tested extracts, the CHCl3 extracts of the Premna serratifolia (syn: P. integrifolia) wood showed anti-melanin deposition activities with IC50 values of $81.3{\mu}g/mL$. Hence, this study aims to identify secondary metabolites with anti-melanin deposition activity from P. serratifolia wood of Myanmar. P. serratifolia belongs to the Verbenaceae family and is widely distributed in near western sea coast from South Asia to South East Asia, which include India, Malaysia, Vietnam, Cambodia, and Sri Lanka. People in Tanintharyi region located in the southern part of Myanmar utilize the P. serratifolia, Sperethusa crenulata, Naringi crenulata, and Limonia acidissima as Thanaka, traditional cosmetics in Myanmar. Thanaka is applied in the form of paste onto skins to make it smooth and clear, as well as to prevent wrinkles, skin aging, excessive facial oil, pimples, blackheads, and whiteheads. However, the chemical constituents responsible for their cosmetic properties are yet to be identified. Moreover, the chemical constituents of P. serratifolia was almost uncharacterized. Investigation of the P. serratifolia chemical constituents is thus an attractive endeavor to discover new anti-melanin deposition active compounds. The investigation of the chemical constituents of the active CHCl3 extract of P. serratifolia led to isolation of four new lignoids, premnan A (1), premnan B (2), taungtangyiol C (3), and 7,9-dihydroxydolichanthin B (4), together with premnan C (5) (assumed to be an artifact), one natural newlignoid,(3R,4S)-4-(1,3-benzodioxol-5-ylcarbonyl)-3-[(R)-1-(1,3-benzo dioxol-5-yl)-1-hydroxy methyl]tetrahydro-2-furanone (6), and five known compounds (7-11)1,2). The structures of all isolated compounds were determined on the basis of their spectroscopic data and by comparison with the reported literatures. The absolute configurations of 1-3 and 5 were also determined by optical rotation and circular dichroism (CD) data analyses1). The anti-melanin deposition activities of all the isolated compounds were evaluated against B16-F10 cell line. 7,9-Dihydroxydolichanthin B (4) and ($2{\alpha},3{\alpha}$)-olean-12-en-28-oic acid (11) showed strong anti-melanin deposition activities with IC50 values of 18.4 and $11.2{\mu}M$, respectively, without cytotoxicity2). On the other hand, compounds 1-3, 5, and 7 showed melanogenesis enhancing activities1). To better understand their anti-melanin deposition mechanism, the effects of 4 and 11 on tyrosinase activities were investigated. The assay indicated that compounds 4 and 11 did not inhibit tyrosinase. Furthermore, we also examined the mRNA expression of microphthalmia-associated transcription factor (MITF), tyrosinase (TYR), tyrosinase-related protein-1 (TRP-1), and tyrosinase-related protein-2 (TRP-2). Compounds 4 and 11 down-regulated the expression of Tyr and Mitf mRNAs, respectively. Although the P. serratifolia wood has been used as traditional cosmetics in Myanmar for centuries, there are no scientific evidences to support its effectiveness as cosmetics. Investigation of the anti-melanin deposition activity of the chemical constituents of P. serratifolia thus provided insight into the effectiveness of the P. serratifolia wood as a cosmetic agent.

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