• Journal of The Korean Society of Agricultural Engineers
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• v.53 no.6
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• pp.31-41
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• 2011

This study was conducted to predict future land-cover changes under climate change scenarios and to cluster analysis of regional land-cover characteristics. To simulate the future land-cover according to climate change scenarios - A1B, A2, and B1 of the Special Report on Emissions Scenarios (SRES), Dyna-CLUE (Conversion of Land Use Change and its Effects) was applied for modeling of competition among land-use types in relation with socioeconomic and biophysical driving factors. Gyeonggi-do were selected as study areas. The simulation results from 2010 to 2040 suggested future land-cover changes under the scenario conditions. All scenarios resulted in a gradual decrease in paddy area, while upland area continuously increased. A1B scenario showed the highest increase in built-up area, but all scenarios showed only slight changes in forest area. As a result of cluster analysis with the land-cover component scores, 31 si/gun in Gyeonggi-do were classified into three clusters. This approach is expected to be useful for evaluating and simulating land-use changes in relation to development constraints and scenarios. The results could be used as fundamental basis for providing policy direction by considering regional land-cover characteristics.

• Proceedings of the Korean Society for Bioinformatics Conference
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• 2000.11a
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• pp.17-20
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• 2000

Structural genomics aims to provide a good experimental structure or computational model of every tractable protein in a complete genome. Underlying this goal is the immense value of protein structure, especially in permitting recognition of distant evolutionary relationships for proteins whose sequence analysis has failed to find any significant homolog. A considerable fraction of the genes in all sequenced genomes have no known function, and structure determination provides a direct means of revealing homology that may be used to infer their putative molecular function. The solved structures will be similarly useful for elucidating the biochemical or biophysical role of proteins that have been previously ascribed only phenotypic functions. More generally, knowledge of an increasingly complete repertoire of protein structures will aid structure prediction methods, improve understanding of protein structure, and ultimately lend insight into molecular interactions and pathways. We use computational methods to select families whose structures cannot be predicted and which are likely to be amenable to experimental characterization. Methods to be employed included modern sequence analysis and clustering algorithms. A critical component is consultation of the presage database for structural genomics, which records the community's experimental work underway and computational predictions. The protein families are ranked according to several criteria including taxonomic diversity and known functional information. Individual proteins, often homologs from hyperthermophiles, are selected from these families as targets for structure determination. The solved structures are examined for structural similarity to other proteins of known structure. Homologous proteins in sequence databases are computationally modeled, to provide a resource of protein structure models complementing the experimentally solved protein structures.

• Korean Journal of Remote Sensing
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• v.33 no.5_2
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• pp.721-732
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• 2017

With the increasing socio-economic importance of rice as a global staple food, several models have been developed for rice yield estimation by combining remote sensing data with carbon cycle modelling. In this study, we aimed to estimate rice yield in Korea using such an integrative model using satellite remote sensing data in combination with a biophysical crop growth model. Specifically, daily meteorological inputs derived from MODIS (Moderate Resolution imaging Spectroradiometer) and radar satellite products were used to run a light use efficiency based crop growth model, which is based on the MODIS gross primary production (GPP) algorithm. The modelled biomass was converted to rice yield using a harvest index model. We estimated rice yield from 2003 to 2014 at the county level and evaluated the modelled yield using the official rice yield and rice straw biomass statistics of Statistics Korea (KOSTAT). The estimated rice biomass, yield, and harvest index and their spatial distributions were investigated. Annual mean rice yield at the national level showed a good agreement with the yield statistics with the yield statistics, a mean error (ME) of +0.56% and a mean absolute error (MAE) of 5.73%. The estimated county level yield resulted in small ME (+0.10~+2.00%) and MAE (2.10~11.62%),respectively. Compared to the county-level yield statistics, the rice yield was over estimated in the counties in Gangwon province and under estimated in the urban and coastal counties in the south of Chungcheong province. Compared to the rice straw statistics, the estimated rice biomass showed similar error patterns with the yield estimates. The subpixel heterogeneity of the 1 km MODIS FPAR(Fraction of absorbed Photosynthetically Active Radiation) may have attributed to these errors. In addition, the growth and harvest index models can be further developed to take account of annually varying growth conditions and growth timings.

• Korean Journal Plant Pathology
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• v.1 no.3
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• pp.199-206
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• 1985

Viroids are the smallest. well-characterized infectious agents presently known. and so far viroids have been found only in higher plants. The structures of viroid-molecules are single-stranded, covalently closed circular RNA molecules with a range of 240 to 380 nucleotides according to the various viroids. Viroids are remarkable not only as a new category of pathogen, which cause economically important diseases, but also as an excellent model system for biochemical and biophysical investigations because of their small size, relative stability and their self-replication. Four different patato spindle tuber viroid isolates, which express the different symptoms on the same host plant exchange only 2 to 6 nucleotides in the total number of 359 nucleotides, but now the mechanism of viroid pathogenicity is not explained fully. Viroid-melecules are replicated without any special viroid-associated proteins, and during the process of viroid replication oligomeric viroid-associated RNAs are detected at nuclei of viroid infected leaf tissue. The mechanism of viroid replication can now be illustrated according to a possible explanation of rolling-circle system. Although the rapid progress have been made in elucidation of the biochemical and biophysical properties of PSTV and other viroids, the mechanism of viroid replication and pathogenicity is less known and is still a matter of speculation. When these problems can be sufficiently explained, the viroid molecule could play an important role as an available vector in plant genetic engineering.

• Korean Journal of Agricultural and Forest Meteorology
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• v.20 no.2
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• pp.228-232
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• 2018

Process-based crop models have been used to assess the impact of climate change on crop production. These models are implemented in procedural or object oriented computer programming languages including FORTRAN, C++, Delphi, Java, which have a stiff learning curve. The requirement for a high level of computer programming is one of barriers for efforts to develop and improve crop models based on biophysical process. In this study, we attempted to develop a Chinese cabbage model using Microsoft Excel with Visual Basic for Application (VBA), which would be easy enough for most agricultural scientists to develop a simple model for crop growth simulation. Results from Soil-Plant-Atmosphere-Research (SPAR) experiments under six temperature conditions were used to determine parameters of the Chinese cabbage model. During a plant growing season in SPAR chambers, numbers of leaves, leaf areas, growth rate of plants were measured six times. Leaf photosynthesis was also measured using LI-6400 Potable Photosynthesis System. Farquhar, von Caemmerer, and Berry (FvCB) model was used to simulate a leaf-level photosynthesis process. A sun/shade model was used to scale up to canopy-level photosynthesis. An Excel add-in, which is a small VBA program to assist crop modeling, was used to implement a Chinese cabbage model under the environment of Excel organizing all of equations into a single set of crop model. The model was able to simulate hourly changes in photosynthesis, growth rate, and other physiological variables using meteorological input data. Estimates and measurements of dry weight obtained from six SPAR chambers were linearly related ($R^2=0.985$). This result indicated that the Excel/VBA can be widely used for many crop scientists to develop crop models.

• Journal of Veterinary Clinics
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• v.29 no.4
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• pp.283-296
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• 2012

Allergic contact dermatitis (ACD) is an inflammatory skin disease and regarded as a prototype of T-cell mediated delayed-type hypersensitivity reactions. Poly-${\gamma}$-glutamic acid (PGA) is a biodegradable polymer that is produced by Bacillus subtilis. This study was performed to assess the effects of PGA in a canine model of ACD. ACD was induced on the back of dogs induced by sensitization and repeated application by 2,4-dinitro-1-chlorobenzene (DNCB). Topical treatment of PGA was applied once a day for 12 days and skin biophysical parameters including transepidermal water loss (TEWL), skin hydration, skin pH, skin thickness and erythema index, were measured every two days during experimental periods. Histopathology and immunohistochemistry were performed to evaluate the antiinflammatory effect. In skin biophysical parameters, TEWL, skin hydration, skin thickness and erythema index were significantly increased, with a maximum increase appeared on day 2 (p < 0.05). On the other hand, skin pH was significantly decreased, with a maximum decrease appeared on day 2 (p < 0.01). After the completion of PGA treatment, skin biophysical parameters were significantly reached those of baseline in a time-dependent manner (p < 0.05). In histopathology, marked increases of epidermal thicknesses were induced after DNCB challenge with numerous inflammatory cell infiltrations and edematous changes, decreases of connective tissue occupied regions in dermis. In addition, marked increases of cytokine - tumor necrosis factor-${\alpha}$ (TNF-${\alpha}$) and interferon-${\gamma}$ (IFN-${\gamma}$)-immunoreactivities in the dermis and of apoptotic markers - caspase-3 and PARP-immunoreactivities in the epidermis were observed in DNCB-PBS control as compared with intact control, respectively (p < 0.01). It means, the ACD and related apoptotic changes were induced by DNCB in the present study. However, these ACD induced by DNCB and related apoptosis in epidermis were significantly inhibited by treatment of PGA treated skin, the decreases of infiltrated inflammatory cells and related decreases of pro-inflammatory cytokine immunoreactivities were also observed (p < 0.01). Based on these findings, PGA may have anti-inflammatory and alleviatory effects in the allergic contact dermatitis.

• Korean journal of applied entomology
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• v.32 no.2
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• pp.236-244
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• 1993

The development of OrientaL tobacco budworm (OTE), Heticoverpa assulta, was studied at seven constant temperatures from 18 to $33^{\circ}C$ with a 14L : 10D photoperiod on the artificial diet. The egg, larval, and pupal duration comprised ca. 10, 48, and 42% of the total developmental time (from egg to adult emergence). The lower developmental threshold temperatures for egg, larval, pupal, and overall development were 8.62, 12.65, 11.64, and $11.89^{\circ}C$, respectively. The biophysical model of Sharpe & DeMichele (1977) provided a good description of OTB's development as a function of temperature ($r^2$=0.993~O.996). The Wmbull distribution was fitted to cumulative frequency distributions of normalized developmental times for each developmental stage of OTE ($r^2$== 0.987 ~0.999).

• Atmosphere
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• v.15 no.2
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• pp.75-90
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• 2005

This study examines the impacts of land cover changes on the East Asia summer monsoon with the National Center for Atmospheric Research Regional Climate Model (NCAR RegCM2), coupled with Biosphere Atmosphere Transfer Scheme (BATS). To assess the goals, two types of land cover maps were used in the simulation of summer climate. One type was NCAR land cover map (CTL) and the other was current land cover map derived from satellite data (land cover: LCV). Warm and cold surface temperature biases of $1-3^{\circ}C$ occurred over central China and Mongolia in CTL. The model produced excessive precipitation over northern land area but less over southern ocean of the model domain. Changes of biophysical parameters, such as albedo, minimum stomatal resistance and roughness length, due to the land cover changes resulted in the alteration of land-atmosphere interactions. Latent heat flux and wind speed in LCV increased noticeably over central China where deciduous broad leaf trees have been replaced by mixed farm and irrigated crop. As a result, the systematic warm biases over central China were greatly reduced in LCV. Strong cooling of central China decreased pressure gradient between East Asian continent and Pacific Ocean. The decreased pressure gradient suppressed the northward transport of moisture from south China and South China Sea. These changes reduced not only the excessive precipitation over north China and Mongolia but also less precipitation over south China. However, the land cover changes increased the precipitation over the Korean Peninsula and the Japan Islands, especially in July and August.

• Journal of The Korean Society of Agricultural Engineers
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• v.57 no.4
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• pp.1-9
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• 2015

The development of drought index that provides detailed-spatial-resolution drought information is essential for improving drought planning and preparedness. The objective of this study was to develop the concept of using satellite-based hybrid drought index called the Vegetation Drought Response Index in South Korea (VegDRI-SKorea) that could improve spatial resolution for monitoring local and regional drought. The VegDRI-SKorea was developed using the Classification And Regression Trees (CART) algorithm based on remote sensing data such as Normalized Difference Vegetation Index (NDVI) from MODIS satellite images, climate drought indices such as Self Calibrating Palmer Drought Severity Index (SC-PDSI) and Standardized Precipitation Index (SPI), and the biophysical data such as land cover, eco region, and soil available water capacity. A case study has been done for the 2012 drought to evaluate the VegDRI-SKorea model for South Korea. The VegDRI-SKorea represented the drought areas from the end of May and to the severe drought at the end of June. Results show that the integration of satellite imageries and various associated data allows us to get improved both spatially and temporally drought information using a data mining technique and get better understanding of drought condition. In addition, VegDRI-SKorea is expected to contribute to monitor the current drought condition for evaluating local and regional drought risk assessment and assisting drought-related decision making.

• Journal of The Korean Society of Agricultural Engineers
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• v.54 no.2
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• pp.77-86
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• 2012

This study was aim to predict future land-cover changes and to analyze regional land-cover changes in irrigation areas and agricultural reservoir watersheds under climate change scenario. To simulate the future land-cover under climate change scenario - A1B of the SRES (Special Report on Emissions Scenarios), Dyna-CLUE (Conversion of Land Use Change and its Effects) was applied for modeling of competition among land-use types in relation to socioeconomic and biophysical driving factors. For the study areas, 8 agricultural reservoirs were selected from 8 different provinces covering all around nation. The simulation results from 2010 to 2100 suggested future land-cover changes under the scenario conditions. For Madun reservoir in Gyeonggi-do, total decrease amount of paddy area was a similar amount of 'Base demand scenario' of Water Vision 2020 published by MLTMA (Ministry of Land, Transport and Maritime Affairs), while the decrease amounts of paddy areas in other sites were less than the amount of 'High demand scenario' of Water Vision 2020. Under A1B scenario, all the land-cover results showed only slight changes in irrigation areas of agricultural reservoirs and most of agricultural reservoir watersheds will be increased continuously for forest areas. This approach could be useful for evaluating and simulating agricultural water demand in relation to land-use changes.