• The Plant Pathology Journal
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• 제28권4호
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• pp.390-400
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• 2012

Eight potato-producing provinces of Iran were surveyed during the growing seasons of 2004-2006 to detect the presence of Tomato yellow fruit ring virus (TYFRV), a tentative species in the genus Tospovirus. A total of 1,957 potato leaf samples were collected from plants with tospovirus-like symptoms of chlorotic or necrotic spots, chlorosis and necrosis. The samples were tested by enzyme-linked immunosorbent assay using TYFRV-specific antibodies. Among those tested, 498 samples (25.4%) were found to be infected with the virus. The virus was detected in 72.4% of the potato fields in all provinces surveyed. Thirteen potato isolates of TYFRV were selected for further biological and molecular studies. Based on their reactions on Nicotiana tabacum plants, the isolates were separated into two groups, namely L (local infection) and N (systemic infection). The nucleotide sequences of the nucleoprotein (N) genes of the isolates were determined and compared with the homologous sequences in Genbank. No recombination evidence was found in the isolates using different recombination-detecting programs. In the phylogenetic tree, the potato isolates fell into two major groups: IRN-1 and IRN-2 corresponding to the two biologically separated groups. This study shows for the first time the biological and phylogenetic relationships of geographically distant TYFRV isolates from potatoes in the mid-Eurasian country of Iran.

• Journal of Microbiology and Biotechnology
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• 제26권7호
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• pp.1320-1332
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• 2016

Light hydrocarbons accumulated in subsurface soil by long-term microseepage could favor the anomalous growth of indigenous hydrocarbon-oxidizing microorganisms, which could be crucial indicators of underlying petroleum reservoirs. Here, Illumina MiSeq sequencing of the 16S rRNA gene was conducted to determine the bacterial community structures in soil samples collected from three typical oil and gas fields at different locations in China. Incubation with n-butane at the laboratory scale was performed to confirm the presence of "universal microbes" in light-hydrocarbon microseepage ecosystems. The results indicated significantly higher bacterial diversity in next-to-well samples compared with background samples at two of the three sites, which were notably different to oil-contaminated environments. Variation partitioning analysis showed that the bacterial community structures above the oil and gas fields at the scale of the present study were shaped mainly by environmental parameters, and geographic location was able to explain only 7.05% of the variation independently. The linear discriminant analysis effect size method revealed that the oil and gas fields significantly favored the growth of Mycobacterium, Flavobacterium, and Pseudomonas, as well as other related bacteria. The relative abundance of Mycobacterium and Pseudomonas increased notably after n-butane cultivation, which highlighted their potential as biomarkers of underlying oil deposits. This work contributes to a broader perspective on the bacterial community structures shaped by long-term light-hydrocarbon microseepage and proposes relatively universal indicators, providing an additional resource for the improvement of microbial prospecting of oil and gas.

• Journal of Species Research
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• 제7권4호
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• pp.315-322
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• 2018

Based on morphological observation, we identified nine ciliates previously unrecorded in Korea, Euplotidium itoi Ito, 1958, Anteholosticha verrucosa (Foissner & Schade, 2000) Berger, 2008, Holostichides dumonti Foissner, 2000, Amphisiella australis Blatterer & Foissner, 1988, Terricirra matsusakai Berger & Foissner, 1989, Uroleptoides binucleatus binucleatus Hemberger, 1985, Uroleptoides magnigranulosus (Foissner, 1988) Berger, 2008, Leptopharynx costatus gonohymen Omar & Foissner, 2012, Pseudochilodonopsis mutabilis Foissner, 1981, from three sites in Korea, which were isolated from three environmental samples, consisting of one seawater and two soil samples. These ciliates were assigned to three classes, five orders, five families, and eight genera. In this study, we provide photographs and brief descriptions and remarks of the nine species.

• Journal of Species Research
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• 제7권4호
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• pp.323-332
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• 2018

Ten stichotrichid ciliates were identified from six environmental samples, consisting of one freshwater, two seawater, and three soil samples. Morphological assessments were performed based on observations of both living and stained specimens. These species were assigned to two orders, three families, and nine genera, and we provide photographs and brief descriptions and remarks for each species: Parabirojimia similis Hu et al., 2002, Arcuseries warreni (Song & Wilbert, 1997) Huang et al., 2014, Gonostomum lajacola Foissner, 2016, Paragonostomoides xianicum Wang et al., 2017, Australocirrus oscitans Blatterer & Foissner, 1988, Monomicrocaryon crassicirratum Foissner, 2016, Monomicrocaryon euglenivorum fimbricirratum Foissner, 2016, Notohymena rubescens Blatterer & Foissner, 1988, Sterkiella multicirrata Li et al., 2018, Stylonychia ammermanni ammermanni Gupta et al., 2001.

• 한국토양비료학회지
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• 제45권6호
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• pp.867-876
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• 2012

The concentration of veterinary antibiotics in aqueous and sediment matrices was measured in agricultural irrigation ditches bordering several animal-feeding operations (AFOs) and then compared to its concentration in the watershed. Analytical determination in aqueous samples was based on solid phase extraction (SPE) and appropriate buffer solutions were used to extract residuals in sediment samples. Separation and detection of extracted veterinary antibiotics were performed with high performance liquid chromatograph tandem mass spectrometry (HPLC/MS/MS). In general, higher concentrations of antibiotic were observed in the aqueous phase of irrigation ditches, with the highest concentration of erythromycin hydrochloride (ETM-$H_2O$) of $0.53{\mu}g\;L^{-1}$, than in aqueous watershed samples. In contrast, higher concentrations were measured in river sediment than in irrigation ditch sediment with the highest concentration of oxytetracycline of $110.9{\mu}g\;kg^{-1}$. There was a high calculated correlation ( > 0.95) between precipitation and measured concentration in aqueous samples from the irrigation ditches for five of the ten targeted veterinary antibiotics, indicating that surface runoff could be an important transport mechanism of veterinary antibiotics from field to environment. Further, environmental loading calculation based on measured concentrations in aqueous samples and flow information clearly showed that irrigation ditches were 18 times greater than river. This result suggests the likelihood that veterinary antibiotics can be transported via irrigation ditches to the watershed. The transport via surface runoff and likely environmental loading via irrigation ditches examined in this study helps identify the pathway of veterinary antibiotics residuals in the environment.

• Journal of Ecology and Environment
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• 제34권3호
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• pp.251-257
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• 2011

The purpose of this study was to investigate the acclimation responses of Tamarix chinensis to cold stress. We evaluated the acclimation responses by measuring biomass, daily elongation rate, chlorophyll content, and total soluble carbohydrate content. The plant samples comprised leaves from seedlings of 2 different ages (8 and 12 weeks); the leaves were collected 0, 2, and 4 weeks after cold treatment. We found that the cold-treated samples showed reduced daily elongation rates and chlorophyll content. Further, these samples showed more than 8-fold increase in the total soluble carbohydrate content. However, the seedling ages did not have a significant influence on the growth of cold-treated seedlings. On the basis of these findings, we can conclude that T. chinensis seedlings aged less than 1 year old show acclimation to cold stress by accumulating soluble carbohydrates. This study may help us understand how T. chinensis seedlings acclimatize to their first cold season.

• Toxicological Research
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• 제7권1호
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• pp.21-27
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• 1991

We developed a simple method to determine benzodiazepines in biological samples using electron capature detectors and nitrogen-phosphorous detectors. The extraction of 13 benezodiazepines in urine at pH 9.5 with toluene and its analysis in GC/NPD showed the peaks in 9-16 min. In this retention time range, the biological backaground was fairly low and the drugs could be identified in low concentrations. The benzodiazepines in urine samples were screened by the fluorescence polarization immunoassay and positive samples were confirmed by the GC/NPD method.

• 대한의용생체공학회:의공학회지
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• 제17권2호
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• pp.209-214
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• 1996

The display of biological signals in raster scan monitors often involves a multirate sampling operation which consists of decimation .and interpolation. All electroencephalouaphic (EEG) samples of 10 to 30 seconds (2, 500 to 7, 500 samples at 250[Hz] sampling frequency) must be displayed in the computer screen to keep the aspect ratio of the paper polygraph output. Since the current afrorclable display technology Plots at most 2, 000 Pixels Per row, sDme signal samples need to be discarde4 This Paper studies methods to perform this operation characterizing them from the signal processing viewpoint and compares the display quality among several decimation techniques. Experimental results show that a nonlinear operation such as the peak detection method could be preferable to the canonical linear filtering to reduce aliasing.

• Journal of Applied Biological Chemistry
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• 제43권4호
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• pp.250-253
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• 2000

The effects of high relative humidity (RH) on the physicochemical properties and microbial activity of mature green tomatoes ('Dombito') during refrigerated storage were determined at three temperatures (5, 10, and $15^{\circ}C$) and four different RH levels (91, 94, 97, and 99%). At each temperature, the weight loss rates of tomatoes at different levels of RH were significantly (p<0.05) different from each other. For the samples stored at $10^{\circ}C$, the weight losses were generally higher than those for the samples at $15^{\circ}C$ within the same RH level (i.e., greater vapor pressure deficit). The color change rates ('a' value) showed positive slopes, indicating that the tomato color was changing from green to red. Neither bacteria nor fungi caused visible damages to the samples, and the microbial counts were below 650 colony forming units/$cm^2$ during the test period.

• Journal of Applied Biological Chemistry
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• 제43권3호
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• pp.161-164
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• 2000

The effects of storage temperature and high relative humidity (RH) on the weight loss, color change, and microbial activity of a mushroom ('Sylvan' hybrid white) were investigated. The experiment was performed at three temperature (5, 10 and $15^{\circ}C$) and four different relative humidity levels (91, 94, 97 and 99%). The weight loss of the tested samples had a highly correlated linear relationship with storage time at each RH level during storage. Both the storage temperature and RH levels in the experiment had signigicant effects (p<0.05) on the weight-loss rate of the tested samples. The loss whiteness of mushrooms was not significantly affected (p>0.05) by RH ranges at the same temperature. No visible damage was caused by either bacteria or fungi in all samples during storage.