• Title/Summary/Keyword: biological information processing

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Considerations on the Making of Scientific Content and Processing of Biological Knowledge (생명과학 지식의 가공과 콘텐츠화 과정에 대한 연구)

  • Ahn, Sun-Young;Kim, San-Ha;Jang, Yi-Kweon
    • The Journal of the Korea Contents Association
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    • v.11 no.11
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    • pp.503-513
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    • 2011
  • Appreciation of nature and an understanding of the biological sciences by the general public are key to the popularization of modern science. In particular, informal and accessible venues such as museum exhibits occupy a crucial role in science education, and they depend heavily on fields related to macrobiology, including Ecology, Animal Behavior, and Environmental Science. Unfortunately, lack of engaged experts and superficial descriptions of natural phenomena all too often prevent scientific knowledge from being shared effectively with the general public. Raw information itself and knowledge are not in a form or structure accessible to nonspecialists. In order to move successfully deliver substantive comprehension of the biological knowledge to the general public, it is necessary to categorize information from a content-conscious perspective and transform it into useful biological content. Therefore, the role of scientists is critically important in a series of processes that include theme selection, editing, and even graphical layout of contents. These processes require not only a scientific and logical way of thinking, but also an aptitude for artistic presentation and effective communication. The concept of Translation is presented as a theoretical and operational framework for the popularization of science.

A Subsurface Environment Management System Combining Computational Model and Spatial Information System (전산모형 및 공간정보시스템을 결합한 지하환경관리시스템의 개발 및 적용)

  • Kim, Joon-Hyun;Han, Young-Han
    • Journal of Environmental Impact Assessment
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    • v.10 no.2
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    • pp.99-108
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    • 2001
  • This study was performed to develop an information processing system for the sound conservation of soil and groundwater resources. The system contains numerical models and geographic information systems for underground flow and contamination. Multidimensional Finite Element Model for Subsurface Environment (MFEMSE) was invented to analyze underground flow and pollution problems of water and gas phases. Newly developed and conventional models (MODFLOW, MOC3D, MT3D, PMPATH, PEST, UCODE) were integrated with GIS (ArcView) for the construction of an integrated information management system of subsurface environment. This system was applied to the management of three mineral water companies located in clean high mountain basin. Desirable management criteria and operational strategies were suggested using this system. The system was constructed to be applied for the broad sense of decision supporting tools in related topics of this study, so that it can be used not only for the prevention regulations, but also for clean up projects.

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Manganese-Enhanced MRI Reveals Brain Circuits Associated with Olfactory Fear Conditioning by Nasal Delivery of Manganese

  • Yang, Ji-ung;Chang, Yongmin;Lee, Taekwan
    • Investigative Magnetic Resonance Imaging
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    • v.26 no.2
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    • pp.96-103
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    • 2022
  • Purpose: The survival of organisms critically depends on avoidance responses to life-threatening stimuli. Information about dangerous situations needs to be remembered to produce defensive behavior. To investigate underlying brain regions to process information of danger, manganese-enhanced MRI (MEMRI) was used in olfactory fear-conditioned rats. Materials and Methods: Fear conditioning was conducted in male Sprague-Dawley rats. The animals received nasal injections of manganese chloride solution to monitor brain activation for olfactory information processing. Twenty-four hours after manganese injection, rats were exposed to electric foot shocks with odor cue for one hour. Control rats were exposed to the same odor cue without foot shocks. Forty-eight hours after the conditioning, rats were anesthetized and their brains were scanned with 9.4T MRI. Acquired images were processed and statistical analyses were performed using AFNI. Results: Manganese injection enhanced brain areas involved in olfactory information pathways in T1 weighted images. Rats that received foot shocks showed higher brain activation in the central nucleus of the amygdala, septum, primary motor cortex, and preoptic area. In contrast, control rats displayed greater signals in the orbital cortex and nucleus accumbens. Conclusion: Nasal delivery of manganese solution enhanced olfactory signal pathways in rats. Odor cue paired with foot shocks activated amygdala, the central brain region in fear, and related brain circuits. Use of MEMRI in fear conditioning provides a reliable monitoring technique of brain activation for fear learning.

Implementation of Integrated search method for Motif Resources (모티프 자원에 대한 통합 접근 검색 메소드 구현)

  • Trang Nguyen Thu;Lee Bum-Ju;Ryu Keun-Ho
    • Proceedings of the Korea Information Processing Society Conference
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    • 2006.05a
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    • pp.3-6
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    • 2006
  • Motif which is a recurrent feature shared by a significant segments from the proteins belonging to different families can be used to predict functional or structural properties of the protein, or to describe features common to biologically related proteins. Although there are many existed motif databases, they are unstandardized and built up by different methods. so it is difficult to get enough motif information when researches use motif databases for classification, prediction, etc. Using logical integration of biological based on cross-references between these databases is the common solution for information tracking through www. However, the problem such as the motif resource tracking method for making a united motif information page emerges from cross-reference. In this paper we propose the motif resource tracking method based on the existed motif databases for easy and comfortable interface better than in the case of using each motif database. The result which is given by this method is the review of necessary information about any motif in PROSITE database.

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Fetal heart rate estimation algorithm for real-time processing (실시간처리를 위한 태아심음 추출 알고리듬)

  • Lee, Eung-Gu;Lee, Yong-Hui;Kim, Seon-Il;Lee, Du-Su
    • Proceedings of the KOSOMBE Conference
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    • v.1994 no.05
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    • pp.96-99
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    • 1994
  • Despite the simplicity of processing, a conventional autocorrelation function(ACF) method for the precise determination of fetal heart rate (FHR) has many problems. In case of weak or noise corrupted Doppler ultrasound signal. the ACF method is very sensitive to the threshold level and data window length. It is very troublesome to extract FHR when there is a data loss. To overcome these problems, the high resolution pitch detection algorithm was adopted to estimate the FHR. This method is more accurate, robust and reliable than the ACF method. With a lot of calculation, however, it is impossible to process real time FHR estimation. This paper is presented a new FHR estimation algorithm for real time processing.

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Applications of Microfluidics in the Agro-Food Sector: A Review

  • Kim, Giyoung;Lim, Jongguk;Mo, Changyeun
    • Journal of Biosystems Engineering
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    • v.41 no.2
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    • pp.116-125
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    • 2016
  • Background: Microfluidics is of considerable importance in food and agricultural industries. Microfluidics processes low volumes of fluids in channels with extremely small dimensions of tens of micrometers. It enables the miniaturization of analytical devices and reductions in cost and turnaround times. This allows automation, high-throughput analysis, and processing in food and agricultural applications. Purpose: This review aims to provide information on the applications of microfluidics in the agro-food sector to overcome limitations posed by conventional technologies. Results: Microfluidics contributes to medical diagnosis, biological analysis, drug discovery, chemical synthesis, biotechnology, gene sequencing, and ecology. Recently, the applications of microfluidics in food and agricultural industries have increased. A few examples of these applications include food safety analysis, food processing, and animal production. This study examines the fundamentals of microfluidics including fabrication, control, applications, and future trends of microfluidics in the agro-food sector. Conclusions: Future research efforts should focus on developing a small portable platform with modules for fluid handling, sample preparation, and signal detection electronics.

Design of a Low-cost Active Dry Electrode Module for Single Channel EEG Recording

  • Byeon Jong-Gil;Jin Kyung-Soo;Park Byoung-Woo
    • Journal of Biomedical Engineering Research
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    • v.26 no.1
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    • pp.49-54
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    • 2005
  • This paper presents a design of 1-channel active dry electrode module for EEG from one's forehead. The IA(instrumentation amplifier) circuit inside the module is based on the configuration sown on the paper MettingVanRijn et al. We analyze the IA circuit to find out the related equation, and then compare its simulated characteristic with the result obtained from the real active dry electrode circuit. With the active dry electrode and the wet(Ag/AgCI) electrode connected to the separated analog processing module on one's forehead at the same time, their real time and FFT outputs of EEG are examined for comparison. The active dry electrode module has advantages over the wet electrode and its analog processing module: 1) The size of the analog processing circuit of the active dry electrode module is smaller than that of existing EEG analog processing module; 2) the total cost required to make the proposed analog processing circuit is much lower than that of the existing circuit, since the designed circuit needs smaller parts; 3) the electrical characteristic is comparable to the general EEG analog processing module even if the designed module has simpler circuit configuration.

A Study on Automatic Design of Artificial Meural Networks using Cellular Automata Techniques (샐룰라 오토마타 기법을 이용한 신경망의 자동설계에 관한 연구)

  • Lee, Dong-Wook;Sim, Kwee-Bo
    • Journal of the Korean Institute of Telematics and Electronics S
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    • v.35S no.11
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    • pp.88-95
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    • 1998
  • This paper is the result of constructing information processing system such as living creatures' brain based on artificial life techniques. The living things are best information processing system in themselves. One individual is developed from a generative cell. And a species of this individual has adapted itself to the environment through evolution. In this paper, we propose a new method of designing neural networks using biological inspired developmental and evolutionary concept. Ontogeny of organism is embodied in cellular automata(CA) and phylogeny of species is realized by evolutionary algorithms(EAs). We call 'Evolving Cellular Automata Neural Systems' as ECANSI. The connection among cells is determined by the rule of cellular automata. In order to obtain the best neural networks in given environment, we evolve the arragemetn of initial cells. The cell, that is a neuron of neural networks, is modeled on chaotic neuron with firing or rest state like biological neuron. A final output of network is measured by frequency of firing state. The effectiveness of the proposed scheme is verified by applying it to Exclusive-OR and parity problem.

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A Study of Detecting The Fish Robot Position Using The Object Boundary Algorithm (물체 형상인식 알고리즘을 이용한 물고기 로봇 위치 검출에 관한 연구)

  • Amarnath, Varma Angani;Kang, Min Jeong;Shin, Kyoo Jae
    • Proceedings of the Korea Information Processing Society Conference
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    • 2015.10a
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    • pp.1350-1353
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    • 2015
  • In this paper, we have researched about how to detect the fish robot objects in aquarium. We had used designed fish robots DOMI ver1.0, which had researched and developed for aquarium underwater robot. The model of the robot fish is analysis to maximize the momentum of the robot fish and the body of the robot is designed through the analysis of the biological fish swimming. We are planned to non-external equipment to find the position and manipulated the position using creating boundary to fish robot to detect the fish robot objects. Also, we focused the detecting fish robot in aquarium by using boundary algorithm. In order to the find the object boundary, it is filtering the video frame to picture frames and changing the RGB to gray. Then, applied the boundary algorithm stand of equations which operates the boundary for objects. We called these procedures is kind of image processing that can distinguish the objects and background in the captured video frames. It was confirmed that excellent performance in the field test such as filtering image, object detecting and boundary algorithm.

PROTOTYPE AUTOMATIC SYSTEM FOR CONSTRUCTING 3D INTERIOR AND EXTERIOR IMAGE OF BIOLOGICAL OBJECTS

  • Park, T. H.;H. Hwang;Kim, C. S.
    • Proceedings of the Korean Society for Agricultural Machinery Conference
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    • 2000.11b
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    • pp.318-324
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    • 2000
  • Ultrasonic and magnetic resonance imaging systems are used to visualize the interior states of biological objects. These nondestructive methods have many advantages but too much expensive. And they do not give exact color information and may miss some details. If it is allowed to destruct some biological objects to get the interior and exterior information, constructing 3D image from the series of the sliced sectional images gives more useful information with relatively low cost. In this paper, PC based automatic 3D model generator was developed. The system was composed of three modules. One is the object handling and image acquisition module, which feeds and slices objects sequentially and maintains the paraffin cool to be in solid state and captures the sectional image consecutively. The second is the system control and interface module, which controls actuators for feeding, slicing, and image capturing. And the last is the image processing and visualization module, which processes a series of acquired sectional images and generates 3D graphic model. The handling module was composed of the gripper, which grasps and feeds the object and the cutting device, which cuts the object by moving cutting edge forward and backward. Sliced sectional images were acquired and saved in the form of bitmap file. The 3D model was generated to obtain the volumetric information using these 2D sectional image files after being segmented from the background paraffin. Once 3-D model was constructed on the computer, user could manipulate it with various transformation methods such as translation, rotation, scaling including arbitrary sectional view.

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