• Journal of Korean Society on Water Environment
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• v.35 no.2
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• pp.152-164
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• 2019

In this study, a Benthic Macroinvertebrates Family Index (BMFI) was developed using 100 indicator groups (99 families including Chironomidae with 2 phena). Families were assigned a score between 1 and 10 depending on their sensitivity to organic pollution. The BMFI was composed of the sensitivity and relative abundance of the indicator taxa. Sensitivity values of each group were generally similar to Biological Monitoring Working Party (BMWP) scores or Walley, Hawkes, Paisley, Trigg (WHPT) scores of UK, Japanese BMWP scores, and the FBI tolerance values of North America. However, sensitivity values of some taxa were significantly different from those of foreign countries, which seemed to have resulted from discrepancy in species composition, difference of taxonomic classification system, or methodological difference for estimation of sensitivity. As an annual average level, BMFI showed significant correlation with concentration of 5-day biochemical oxygen demand (BOD5) (correlation coefficient r = -0.80, n = 569 sites), total suspended solids (r = -0.68), and total phosphorus (r = -0.79). In addition, BMFI revealed strong correlation with Shannon-Weaver's species diversity (r = 0.85), Margalef's species richness (r = 0.85) and McNaughton's dominance (r = -0.84). Correlation between BMFI and water quality parameters or community indices such as species diversity did not show significant difference compared to that of species-level indices such as BMI (Benthic Macroinvertebrates Index). This means that BMFI is a more useful indicator in terms of easy identification of organisms. BMFI was used to assess the environmental status of 3,017 sites of Stream Ecosystem Survey conducted by the Korean Ministry of Environment between 2016 and 2018. As a result, about half of all sites appeared to be in good condition, and a quarter in poor condition.

• BMB Reports
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• v.52 no.9
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• pp.540-547
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• 2019

Immune repertoire is a collection of enormously diverse adaptive immune cells within an individual. As the repertoire shapes and represents immunological conditions, identification of clones and characterization of diversity are critical for understanding how to protect ourselves against various illness such as infectious diseases and cancers. Over the past several years, fast growing technologies for high throughput sequencing have facilitated rapid advancement of repertoire research, enabling us to observe the diversity of repertoire at an unprecedented level. Here, we focus on B cell receptor (BCR) repertoire and review approaches to B cell isolation and sequencing library construction. These experiments should be carefully designed according to BCR regions to be interrogated, such as heavy chain full length, complementarity determining regions, and isotypes. We also highlight preprocessing steps to remove sequencing and PCR errors with unique molecular index and bioinformatics techniques. Due to the nature of massive sequence variation in BCR, caution is warranted when interpreting repertoire diversity from error-prone sequencing data. Furthermore, we provide a summary of statistical frameworks and bioinformatics tools for clonal evolution and diversity. Finally, we discuss limitations of current BCR-seq technologies and future perspectives on advances in repertoire sequencing.

• Journal of Environmental Science International
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• v.27 no.11
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• pp.1007-1021
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• 2018

Community dynamics of benthic macroinvertebrates and biological evaluation of water quality were investigated at Gigyecheon of Pohang and Gyeongju, Korea. The survey was carried out at 8 sites from May to October, 2017. As a result, total of 104 species under 54 families, 15 orders, 8 classes in 4 phyla with 5,052 individuals were revealed. The number of species was the most abundantly identified in aquatic insects, 76 species under 34 families, 6 orders. Among them, the order Odonata was the most abundant taxon as 21 species(20.2%). The most abundant individuals were collected in the phylum Mollusca as 1,453 individuals(28.8%). Various species appeared dominantly at each site by season, and the most dominant species was Caridina denticulata denticulata belonging to the class Malacostraca with 0.08 of dominance index. According to the results of community structure analyses, the diversity and richness indices were the highest at site II, the evenness index was the highest at site I, and the dominance index was the highest at site IV. The number of species and individuals of gathering collectors were the highest among functional feeding groups. Those of sprawlers were the highest among habitat orientation groups. The ESB showed a tendency to change according to season and site, and it was the highest in May at most surveyed sites. The KSI was also somewhat fluctuated according to season and site. From these indices, average biological water quality was evaluated as class II.

• Journal of Species Research
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• v.8 no.1
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• pp.136-159
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• 2019

This study was carried out to investigate the flora of six islands belonging to the Gogunsan Archipelago (i.e., Sinsi-do, Seonyu-do, Munyeo-do, Yami-do, Bian-do, and Duri-do) in the Korean Peninsula. As results of five field surveys from March to October of 2016, we have identified 575 total taxa, representing 527 species, five subspecies, 42 varieties, and one hybrid, placed in 358 genera and 118 families. Of these 575 taxa, four are endemic to Korea, six taxa are listed on the Korean Red List of threatened species, 67 are floristic regional indicator plants, and 74 are invasive alien species. In this study, we compared species richness among the islands, and find that the larger the islands, the higher the species richness. In the case of habitat affinity types, forest species were most common, followed by farmland, seacoast, bare ground and wetland species. From similarity analyses based on the composition of vascular plants, each island did not exhibit either local specificity or unique diversity. On the contrary, the proportion of invasive alien and ruderal species may increase by human activities. Investigations and analyses of island flora such as this are important to assess the current status of the flora, predict future vegetation patterns and the spread of the alien species, and establish managment plans of plant diversity.

• The Korean Journal of Ecology
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• v.19 no.1
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• pp.55-64
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• 1996

This is a report on the recovery of vegetation and secondary succession in the burned area studied from April, 1990 to April. 1991. The forest fire occurred in a part of Mt. $K\v{u}mo-san$ on April, 1986 and the pine forest and its understory vegetation were burned out completely. The floristic compositions of burned (B) and unburned (U) areas were composed of sixty eight and thirty one species (vascular plants), respectively. These species were divided into invaders (47 species), increasers (15 species), deceasers (3 species), neutrals (3 species), and retreaters (10 species) on the basis of summed dominance ratio ($SDR_3$). Biological spectra showed the $H-D_1-R_5-e$ type in both the burned and unburned areas. The species of Lespedeza ($SDR_3$=94.7), Miscanthus (91.95), Festuca (68.33), and Spodiopogon (52.06) were dominant in the burned areas, while the species of Pinus (76.67), Robinia (56.25), Quercus (52.08), and Carex (40.25)were dominant in the unburned area. Dominance index (C) in burned and unburned areas was 0.15 and 0.25, respectively. the index of similarity (CCs) was 0.42. The degree of succession (DS) and species diversity (H) in burned and unburned areas were 675.8, 884.2 and 4.07, 2.05, respectively. The degree of succession in the burned area graduall increased and the burned area was recovered to be simmilar to the unburned area. Evenness index in burned and unburned areas was 0.965 and 0.595, respectively.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.47 no.3
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• pp.274-282
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• 2014

We examined seasonal variation in the structure of marine macroalgal communities at five sites around the Byeonsan Peninsula, Korea, from January to October 2011. Sixty eight species were identified, including 11 green, 17 brown and 40 red algae. Species richness was highest at Gyeokpo (51 species) followed by Sambal (47), Gosapo (34), Byeonsan (33), and Habgoo (18). Seaweed biomass ranged from 12.98 to 145.33 g dry $wt/m^2$, with maximum and minimum biomasses at Gyeokpo and Habgoo, respectively. Sargassum thunbergii was the representative alga species occupying 47.89% of the total biomass. The dominant seaweeds were S. thunbergii, Corallina pilulifera, Ulva spp, Gracilaria vermiculophylla, and Carpopeltis affinis. No distinctive vertical distribution of seaweeds was found because S. thunbergii, Ulva spp, and G. vermiculophylla were all distributed from high to low shore. Community indices were as follows: dominance index (DI), 0.44-0.61; richness index (R), 6.27-10.35; evenness index (J'), 0.38-0.59; and diversity index (H'), 1.48-1.71. Gyeokpo had the most biomass and highest species richness, and the lowest percentage of Ulva species. However, species richness declined at Gyeokpo, from 78 to 51 species within 10 years, implying that eutrophication and sedimentation from Mankyeong and Dongjin rivers have reduced the stability of seaweed communities.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.50 no.3
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• pp.319-325
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• 2017

Marine algal flora and community structures were examined seasonally at three sites around the Shingori Nuclear Power Plant, Korea from February to November 2016. A total of 76 species were identified, including 9 green, 14 brown and 53 red algae. The greatest number of species occurred at Daesongri (51 species) followed by Sinamri (43 species) and at the discharge area (38 species) during the study period. Of the 76 seaweeds, 59 annuals and 17 warm tolerant species were recorded. Annual average biomass in dry weight varied from $168.02g/m^2$ at the discharge area to $222.53g/m^2$ at Sinamri. The coarsely branched form was the dominant functional form of seaweeds at the three sites. Seaweed community structures at the discharge site were distinguishable by decreasing species richness, biomass, species diversity index, richness index, and evenness index. The ratio of warm tolerance species and the dominance index values were remarkably higher at the discharge than those at the other sites.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.51 no.5
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• pp.571-578
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• 2018

Seasonal variability in algal community structure of the subtidal zone was examined at four study sites on the southeastern coast of Korea from February to November 2016. A total of 81 species of algae (8 green, 12 brown, and 61 red) were indentified. During the study period, the greatest number of species was observed at Sinamri (57 species) followed by Daesongri (50 species), Dongbaekri (47 species) and Gangyangri (42 species). Of the six functional seaweed forms, the coarsely-branched form was the most dominant, accounting for about 43% of the total species at Daesongri. The annual average biomass in wet weight varied from $700.59g/m^2$ at Sinamri to $1,712.45g/m^2$ at Daesongri. The parameters of seaweed community structures were as follows: dominance index (DI), 0.30-0.54; richness index (R), 4.92-7.05; evenness index (J'), 0.54-0.72; and diversity index (H'), 2.05-2.91.

• Journal of Environmental Science International
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• v.25 no.5
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• pp.655-671
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• 2016

The distribution characteristics of functional feeding groups and biological evaluation of water quality with benthic macroinvertebrates were investigated from 2013 to 2014 in the mountain streams of Jirisan National Park. Both quantitative and qualitative collection had been performed six times during study periods in twelve sites located at upstream, midstream and downstream of four valleys, Chilsungol, Baemsagol, Daesunggol and Piagol of freshwater ecosystem in Jirisan National Park. As results, the total collected benthic macroinvertebrates were 3 phyla, 4 classes, 11 orders, 37 families, 107 species and 4,028 individuals. In 2013, 3 phyla, 4 classes, 10 orders, 32 families, 89 species and 1,829 individuals were collected. And in 2014, 3 phyla, 4 classes, 9 orders, 31 families, 80 species and 2,199 individuals were identified. The total dominant species was Ecdyonurus kibumensis, and EPT groups occupied 80.39% of total species number. Biotic indices were also compared to site and to season. The dominant index (DI) was highest at the downstream of Baemsagol in the spring of 2013, and the evenness index (J') was highest at the downstream of Daesunggol in the summer of 2013. Both diversity index (H') and richness index (RI) were highest at the upstream of Baemsagol in the summer of 2014. The correlation between altitude above sea level and functional feeding groups of benthic macroinvertebrates was also researched in this study. As a result, the species number of shredders and predators have significantly increased according to the increase of the altitude of their habitat. On the other hand, individuals of gathering collectors have increased according to the increase of altitude. The biological water quality was evaluated and compared with several methods in this study, and we suggest that ESB and GPI are more appropriate than KSI and BMI to evaluate biological water quality of mountain stream water.

• Journal of the Korean Institute of Landscape Architecture
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• v.33 no.2 s.109
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• pp.48-59
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• 2005

The purpose of this study was to examine the ecological characteristics of herbaceous communities by systematic and scientific analysis of their structure and diversity in the Midongsan Arboretum and to offer raw data for a long-tenn monitoring study. The importance value and diversity index of species appearing in twenty plots from July to September, 2004 were analyzed and a management plan for these communities is presented. Vascular plants were represented by 60 taxa of 23 families, 51 genera, 50 species and 10 varieties. Based on the results of importance value analysis, the most dominant species was Artemisia princeps var. orientalis, followed by Setaria viridis and Erigeron canadensis. The diversity index analysis showed that plot no. 5 had the highest H' and H'_{max}$(2.0135 and 2.6391). It's species composition was comparatively more diverse and it's structure more stable than other plots. Artemisia montana and Dactylis glomerata showed the highest correlation between species. Because herbaceous communities are important biological habitats and provide important function in environmental conservation, it is important to properly preserve these communities. At the same time, in order to preserve genetic resources and improve spatial function, it may be necessary to consider removing herbaceous communities in certain areas. In the future, the relations between physicochemical soil properties and herbaceous communities should be examined and community movement should be studied.