• Title/Summary/Keyword: biodiversity database

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Development of DNA Barcode Database and Identification System of Forest Mushrooms in Korea

  • Han, Sang-Kuk;Jo, Jong Won;Kim, Chang Sun;Kwag, Young-Nam;Sung, Gi-Ho
    • 한국균학회소식:학술대회논문집
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    • 2014.05a
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    • pp.17-17
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    • 2014
  • Over five thousand higher fungal specimens were collected from 32 forest areas of Chungcheong and Gyeongsang province from 2012 to 2013. We obtained 513 strains and 3,120 ITS sequences. Mushrooms were first identified with macro- and micro-scopic characters, and their identification was confirmed on the basis of ITS sequences. Voucher specimens were designated for each species found in Korea. Construction of DNA barcoding Database is currently underway with sequences of 409 species. During the development of the database, some new species were recognized, along with several Korean new records. When the system has been completed, it will provide essential molecular information for metagenomic and phylogenetic researches for higher fungi.

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Long-Term Biodiversity Research Programme for Mindanao, Philippines

  • Amoroso, Victor B.
    • The Korean Journal of Ecology
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    • v.23 no.2
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    • pp.141-147
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    • 2000
  • The Long-Term Biodiversity Research Programme (LTBRP) for Mindanao is envisioned to be a collaborative programme of the Philippines. It will be a programmatic research on biodiversity - its status, threats. and conservation and management. The chosen research site is Mt. Malindang in Misamis Occidental of Mindanao. The BRP will support a set of research projects that will generate knowledge on biological and ecological, socio-economic. cultural and policy aspects of biodiversity conservation. It will also enable researchers to develop and try new methods for research on these aspects, separately or crossing boundaries of academic disciplines. Moreover. the BRP will implement support programmes which will provide the linkages of research activities to development issues and needs in the research site. The support programmes will also draw from the research projects, the knowledge that can be lent or immediately available to policy and programme formulation. The support programmes will comprise: human resource development or capability-building; information, education and communication; database; networking; community organizing: and development action. The BRP will be undertaken by a group of academie and research institutions from the Philippines, in partnership with their respective government entities and local government units in Mindanao. The Biodiversity Research Programme (BRP) will comprise a set of research projects to be undertaken by small research teams in the site. Researchable areas have been identified initially through the National Biodiversity Research Agenda. and later enriched in the Participatory Rural Appraisal (PRA) Analysis workshops by the Mindanao researchers and Philippine resource persons. Results of the PRA are presented in the paper.

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A Study on the National and International Research Trend of Biodiversity Assessment method and Its Application of Environmental Impact Assessment (생물다양성 평가기법의 국내외 연구동향 분석 및 환경영향평가 적용가능성에 대한 연구)

  • Koo, Meehyun;Lee, Dong-Kun
    • Journal of Environmental Impact Assessment
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    • v.21 no.1
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    • pp.119-132
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    • 2012
  • Biodiversity is a key element of ecosystem of which function provides essential product and service in human life. In the course since development projects often causes damages to biodiversity, environmental impact assessment technique must be capable of accurately assessing potential impact from flora and fauna and to entire ecosystem. Korea needs improvement of its assessment technique that is compatible with Korean environmental regulatory standard that is generally stricter than that of most countries. This study attempts to explore both domestic and overseas biodiversity assessment techniques and analyze each stage of environmental impact assessment. The data is collected from numbers of literatures selected by navigating both domestic and overseas literature database with certain keywords. Among the 44 selected papers, overseas publications outnumber those of domestics, and there are more researches on assessment methodology of biodiversity than assessment tool and model. In terms of environmental impact assessment, the number of papers on environmental impact forecast exceeds the numbers of papers on current state of environment and the impact minimizing solution. Therefore, contents and trends of those researches in the different stages of environmental impact assessment discussed in this paper not only suggest potential impact on biodiversity and minimization solutions in detail, but is also a valuable resource particularly for biodiversity relevant environmental assessment technique improvement in Korea. Proposing of a new direction of improvement in biodiversity assessment techniques makes this study significant, and further research for preservation of biodiversity should follow up to provide an improvement scheme for biodiversity assessment techniques in the future.

Data Base on Resources of Mushrooms in Korea

  • Cho, Duck-Hyun;Cho, Won-Kyung
    • Plant Resources
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    • v.4 no.3
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    • pp.153-156
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    • 2001
  • Today information is important for man and total fields. Science field is not exception. Currently information age things of information is only useful for man and total industry. So bioinformation is necessary of biodiversity in broadly wide and detailed information. Among information, bioinformation of biodiversity is important and utilization of living things. Among them, the mushroom(higher fungi) are an important part in ecosystem as a decomposer responsible for recycling materials. Many living things today, however, have endangered by environmental pollution and ecological destruction. The higher fungi also are not exception. Mushroom has been used for food sources, pharmacy and forests resources from ancient times. Among biodiversity, database of mushroom is very necessary for university, institute and industry. This DB contains four items of native mushroom(higher fungi) from Korea. first item contain species, genus, family, order class, ad division according to the classification. Second item contain pharmaceutical purpose, food source, culture, toxic, anti-cancer of the application. Third item contain symbiosis, rotten trees of the ecological resources. Fourth item contain geographical distribution and illustrated literature. Information system is also available using KRISTAL II for searches on the WEB in URL http://ruby. kisti. re. kr/∼mushroom.

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Data Base on Resources of Mushrooms in Korea

  • Cho, Duck-Hyun;Cho, Won-Kyung
    • Proceedings of the Plant Resources Society of Korea Conference
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    • 2001.11a
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    • pp.9-14
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    • 2001
  • Today information is important for man and total fields. Science field is not exception. Currently information age things of information is only useful for man and total industry. So bioinformation is necessary of biodiversity in broadly wide and detailed information. Among information, bioinformation of biodiversity is important and utilization of living things. Among them, the mushroom(higher fungi) are an Important part in ecosystem as a decomposer responsible for recycling materials . Many living things today, however, have endangered by environmental pollution and ecological destruction. The higher fungi also are not exception. Mushroom has been used for food sources, pharmacy and forests resources from ancient times. Among biodiversity, database of mushroom is very necessary for university, institute and industry. This DB contains four items of native mushroom(higher fungi) from Korea. first item contain species, genus, family, order class, ad division according to the classification. Second item contain pharmaceutical purpose, food source, culture, toxic, anti-cancer of the application. Third item contain symbiosis, rotten trees of the ecological resources. Fourth item contain geographical distribution and illustrated literature. Information system is also available using KRISTAL II for searches on the WEB in URL http://ruby. kisti. re. kr/~mushroom

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Korea Barcode of Life Database System (KBOL)

  • Kim, Sung-Min;Kim, Chang-Bae;Min, Gi-Sik;Suh, Young-Bae;Bhak, Jong;Woo, Tae-Ha;Koo, Hye-Young;Choi, Jun-Kil;Shin, Mann-Kyoon;Jung, Jong-Woo;Song, Kyo-Hong;Ree, Han-Il;Hwang, Ui-Wook;Park, Yung-Chul;Eo, Hae-Seok;Kim, Joo-Pil;Yoon, Seong-Myeong;Rho, Hyun-Soo;Kim, Sa-Heung;Lee, Hang;Min, Mi-Sook
    • Animal cells and systems
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    • v.16 no.1
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    • pp.11-19
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    • 2012
  • A major concern regarding the collection and storage of biodiversity information is the inefficiency of conventional taxonomic approaches in dealing with a large number of species. This inefficiency has increased the demand for automated, rapid, and reliable molecular identification systems and large-scale biological databases. DNA-based taxonomic approaches are now arguably a necessity in biodiversity studies. In particular, DNA barcoding using short DNA sequences provides an effective molecular tool for species identification. We constructed a large-scale database system that holds a collection of 5531 barcode sequences from 2429 Korean species. The Korea Barcode of Life database (KBOL, http://koreabarcode.org) is a web-based database system that is used for compiling a high volume of DNA barcode data and identifying unknown biological specimens. With the KBOL system, users can not only link DNA barcodes and biological information but can also undertake conservation activities, including environmental management, monitoring, and detecting significant organisms.

A Study on Using of Biodiversity Database for Learning of Biodiversity (생물다양성 학습을 위한 생물다양성 DB 활용에 관한 연구)

  • Ahn Bu-Young;Cho Hee-Hyung;Park Jae-Hong
    • Proceedings of the Korea Contents Association Conference
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    • 2005.11a
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    • pp.428-432
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    • 2005
  • This paper has studied the concept and technical factors of e-Learning system to which we intend to apply domestic biodiversity information. This article describes how we analyzed and designed the e-learning system to serve biodiversity information as e-Learning contents. It would be useful for the public and students if this information are organized and provided as e-learning contents especially in our country which has well-established network infrastructure considering the limited land space. It is expected that the establishment of e-Learning system based on this proposed design will help students and public to access and team biodiversity on cyber space.

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Development of PCR based Genetic Marker for Discrimination of Manchurian Clematis, Clematis terniflora var. mandshurica and Three-leaf clematis, Clematis apiifolia (으아리와 사위질빵 판별을 위한 PCR 기반의 마커 개발)

  • Dae-Ju Oh;Eun Bi Jang;Jong-Du Lee;Hyejin Hyeon;Yong-Hwan Jung
    • Proceedings of the Plant Resources Society of Korea Conference
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    • 2021.04a
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    • pp.16-16
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    • 2021
  • To distinguish manchurian clematis, Clematis terniflora var. mandshurica and three-leaf clematis, C. apiifolia, we collected 9 nuclear ITS sequences and two sequences of trnQ-trnH intergenic spacer and trnH region in GenBank database. Those sequences were aligned to find differences between those of C. terniflora var. mandshurica and C. apiifolia. Two primer pairs were newly designed base on the differences between two species and conducted multiplex PCR. The size of amplified fragments using generated primers were 380 base pairs (only three-leaf clematis) and 189 base pairs (both species). This genetic marker based on PCR is useful to discrimination of C. terniflora var. mandshurica and C. apiifolia

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Status and Quality Analysis on the Biodiversity Data of East Asian Vascular Plants Mobilized through the Global Biodiversity Information Facility (GBIF) (세계생물다양성정보기구(GBIF)에 출판된 동아시아 관속식물 생물다양성 정보 현황과 자료품질 분석)

  • Chang, Chin-Sung;Kwon, Shin-Young;Kim, Hui
    • Journal of Korean Society of Forest Science
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    • v.110 no.2
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    • pp.179-188
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    • 2021
  • Biodiversity informatics applies information technology methods in organizing, accessing, visualizing, and analyzing primary biodiversity data and quantitative data management through the scientific names of accepted names and synonyms. We reviewed the GBIF data published by China, Japan, Taiwan, and internal institutes, such as NIBR, NIE, and KNA of the Republic of Korea, and assessed data in diverse aspects of data quality using BRAHMS software. Most data from four Asian countries have quality problems with the lack of data consistency and missing information on georeferenced data, collectors, collection date, and place names (gazetteers) or other invalid data forms. The major problem is that biodiversity management institutions in East Asia are using unstructured databases and simple spreadsheet-type data. Owing to the nature of the biodiversity information, if data relationships are not structured, it would be impossible to secure the data integrity of scientific names, human names, geographical names, literature, and ecological information. For data quality, it is essential to build data integrity for database management and training systems for taxonomists who are continuous data managers to correct errors. Thus, publishers in East Asia play an essential role not only in using specialized software to manage biodiversity data but also in developing structured databases and ensuring their integration and value within biodiversity publishing platforms.

Site-Level Assessment of Other Effective Area-based Conservation Measures - Focusing on the Korea National Arboretum - (기타 효과적인 지역 기반 보전 수단(OECMs)의 개별 평가 - 국립수목원을 중심으로 -)

  • Shim, Yun-Jin;Sung, Jung-Won;Lee, Kyeong-Cheol;Kweon, Hyeong-Keun;An, Jong-Bin
    • Journal of the Korean Society of Environmental Restoration Technology
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    • v.26 no.2
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    • pp.1-11
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    • 2023
  • By delivering effective, in-situ conservation of biodiversity, OECMs can contribute to sustaining existing biodiversity values and improving biodiversity conservation outcomes. In this study, for the reporting of OECMs required by Kunming-Montreal Global Biodiversity Framework, the site-level assessment of the Korea National Arboretum and Buffer Zones were conducted using the assessment tool of IUCN. The site-level assessment was carried out in three steps(step 1: screening, step 2 : consent for full assessment, step 3 : the full assessment). It was found that the criteria were satisfied except for the consent for full assessment, sustainability of governance and management arrangements, and the equity of governance and management. Although the governing authority, rights-holders or any other stakeholders could be identified, the step of acknowledging and agreeing to the full OECM assessment was not possible because the governance was not established. As a result of the assessment of equitable governance and management in the aspect of recognition, procedure, and distribution based on criterion(the equity of governance and management), it is judged that more specific measures are needed in the aspect of recognition. And in the aspect of procedure, there is no legal basis for participation in governance and collection of opinions, so it is judged that there is a limit to listening and reflecting the opinions of stakeholders. In the aspect of distribution, it is necessary to further confirm whether it provides direct benefits to rights-holders such as landowners in the region. And it is necessary to prepare specific criteria to assess the important biodiversity values. Therefore, in order to promote OECM reporting in the future, it is necessary to conduct detailed research on various types of governance establishment and operation plans that can establish the basis for recognizing and agreeing to OECM assessment, specific criteria and reasonable measures to judge equity, and important biodiversity value.