• 전자공학회논문지 IE
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• 제49권2호
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• pp.58-64
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• 2012

본 논문에서는 유비쿼터스 헬스케어를 위한 분산형 게이트웨이 시스템을 제안 및 설계하였다. 게이트웨이를 이용하여 생체신호를 지그비 모듈에서 게이트웨이로 이 게이트웨이에서 데이터베이스 간의 원활한 정보 교환을 위한 프로토콜 변환 알고리즘을 설계 및 구현하였다. 분산형 게이트웨이 시스템은 생체 신호 획득센서, 지그비 모듈, 분산형 게이트웨이 그리고 데이터베이스로 구성되며 생체센서에 감지되면 지그비 모듈을 통해 게이트웨이로 전송된다. 분산형 게이트웨이에서는 전송받는 데이터를 분석하여, 환자를 모니터링하게 된다. 본 연구에서 제안한 방법의 타당성을 검토하고자 센서 네트워크, 분산형 게이트웨이 그리고 데이터베이스를 구현하여 시뮬레이션을 통하여 검증하였으며 기존의 방법에 비하여 우수한 성능을 보였다. 제안한 방법의 시스템은 향 후 독거노인 활동량 분석, 방범 시스템, 홈 네트워크 서비스 등. 다양한 분야에서 활용 가능하다.

• Journal of Microbiology and Biotechnology
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• 제26권11호
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• pp.1863-1870
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• 2016

Antimicrobial peptides/proteins (AMPs) are present in all types of organisms, from microbes and plants to vertebrates and invertebrates such as insects. The grasshopper Oxya chinensis sinuosa is an insect species that is widely consumed around the world for its broad medicinal value. However, the lack of available genetic information for this species is an obstacle to understanding the full potential of its AMPs. Analysis of the O. chinensis sinuosa transcriptome and expression profile is essential for extending the available genetic information resources. In this study, we determined the whole-body transcriptome of O. chinensis sinuosa and analyzed the potential AMPs induced by bacterial immunization. A high-throughput RNA-Seq approach generated 94,348 contigs and 66,555 unigenes. Of these unigenes, 36,032 (54.14%) matched known proteins in the NCBI database in a BLAST search. Functional analysis demonstrated that 38,219 unigenes were clustered into 5,499 gene ontology terms. In addition, 26 cDNAs encoding novel AMPs were identified by an in silico approach using public databases. Our transcriptome dataset and AMP profile greatly improve our understanding of O. chinensis sinuosa genetics and provide a huge number of gene sequences for further study, including genes of known importance and genes of unknown function.

• Genomics & Informatics
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• 제3권3호
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• pp.86-93
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• 2005

Human brain EST data provide important clues for our understanding of the molecular biology associated with the function of the normal brain and the molecular pathophysiology with brain disorders. To systematically and efficiently study the function and disorders of the human brain, 45,773 human brain ESTs were collected from 27 human brain cDNA libraries, which were constructed from normal brains and brain disorders such as brain tumors, Parkinson's disease (PO) and epilepsy. An analysis of 45,773 human brain ESTs using our EST analysis pipeline resulted in 38,396 high-quality ESTs and 35,906 ESTs, which were coalesced into 8,246 unique gene clusters, showing a significant similarity to known genes in the human RefSeq, human mRNAs and UniGene database. In addition, among 8,246 gene clusters, 4,287 genes ($52\%$) were found to contain full-length cONA clones. To facilitate the extraction of useful information in collected these human brain ESTs, we developed a user-friendly interface system, the Korea Brain Unigene Database (KBUD). The KBUD web interface allows access to our human brain data through three major search modes, the BioCarta pathway, keywords and BLAST searches. Each result when viewed in KBUD offers comprehensive information concerning the analyzed human brain ESTs provided by our data as well as data linked to various other publiC databases. The user-friendly developed KBUD, the first world-wide web interface for human brain EST data with ESTs of human brain disorders as well as normal brains, will be a helpful system for developing a better understanding of the underlying mechanisms of the normal brain well as brain disorders. The KBUD system is freely accessible at http://kugi.kribb.re.kr/KU/cgi -bin/brain. pI.

• 인터넷정보학회논문지
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• 제16권2호
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• pp.109-115
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• 2015

신규 의료기기 개발 기술의 발전으로 다양한 형태로 손쉽게 생체 정보 및 의료 정보를 얻을 수 있는 기술이 증가하고 있다. 이러한 정보 수집 기술과 기기들의 증가로 생체 정보는 일상생활의 라이프로그와 함께 의료서비스의 주요 정보로 활용되고 있다. 그러나 다양한 생체신호의 활용성이 증가하고 있지만 보안적인 측면을 고려하지 않는 문제점을 갖고 있다. 또한, 의료현장에서 환자의 생체신호와 의료영상정보는 개별적인 디바이스에 의해 생성되며, 통합 관리되지 못하는 실정이다. 이러한 문제점을 해결하기 위해서, 본 논문에서는 생체신호와 의사의 소견정보를 포함하여 QR 코드화하고 이와 연계된 의료영상정보와 통합하고자 한다. 이를 위해, 의료영상정보 표준인 DICOM(Digital Imaging and Communication in Medicine)과 기존 생체신호 계측기들로부터 수집된 생체신호를 QR 코드화하여 의료영상정보에 통합한 이미지 파일 스킴을 제시한다. 그리고 시스템 구현 환경은 의료영상기기와 생체신호 수집을 위한 생체신호 계측기 그리고 스마트 디바이스와 PC로 구성하였다. 의료기기나 생체 신호 계측장치로부터 데이터를 전송 받기 위한 의료영상이미지 정보와 생체신호의 ROI 추출을 위하여 .NET Framework를 사용하여 QR 서버 모듈을 윈도우 서버 2008 운영체제에서 운영되도록 구현하였다. QR 서버 모듈의 주요기능은 의료영상기기로부터 생성된 DICOM파일을 파싱하고, 식별 ROI 정보를 추출하여 데이터베이스에 저장하여 관리한다. 또한, EMR, OCS와 같은 환자의 의료정보는 기본 정보 및 긴급상황 시 필요한 ROI 정보를 추출하여 QR코드화 하여 관리한다. 또한 생체 계측 기기로 환자 식별에 사용될 PID (patient identification) 와 함께 생체 정보를 전송 받을 경우 생체 정보의 크기에 따라 이를 해당 환자의 ROI와 함께 QR코드화 하여 관리하며, 생체 정보 파일 또한 저장하여 관리한다. 전송받은 생체정보가 QR코드로 변환할 최대 사이즈 이상일 경우 서버를 통해 생체정보에 접근할 수 있는 URL 정보를 QR코드화 한다. 또한 QR 코드 형태로 제공되는 정보는 .NET 프레임워크가 설치된 PC와 Android기반의 스마트 단말기상에 뷰어 프로그램을 통해 확인함으로 인증된 클라이언트만이 관련 정보를 확인할 수 있도록 하였다. 끝으로 응용 서비스의 수행결과를 통해 기존 의료영상정보와 생체신호 그리고 환자의 건강정보가 통합되어 의료현장에서 적용하는데 적합한 의료정보 서비스를 제공함을 보였다.

• 대한의용생체공학회:의공학회지
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• 제30권4호
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• pp.294-305
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• 2009

The bio signals essentially have different characteristics in each person. And the main purpose of automatic diagnosis algorithm based on bio signals focuses on discriminating differences of abnormal state from personal differences. In this paper, we propose automatic ECG diagnosis algorithm which discriminates normal heart beats from premature ventricular contraction using optimization of wavelet parameterization to solve that problem. The proposed algorithm optimizes wavelet parameter to let energy of signal be concentrated on specific scale band. We can reduce the personal differences and consequently highlight the differences coming from arrhythmia via this process. The proposed algorithm using ELM as a classifier show high discrimination performance between normal beat and PVC. From the experimental results on MIT-BIH arrhythmia database the performances of the proposed algorithm are 98.1% in accuracy, 93.0% in sensitivity, 96.4% in positive predictivity, and 0.8% in false positive rate. This results are similar or higher then results of existing researches in spite of small human intervention.

• 한국컴퓨터정보학회논문지
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• 제19권8호
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• pp.27-34
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• 2014

이 논문에서는 hybrid projection 함수와 rank order 필터를 이용하여 눈동자를 검출하는 방법을 제안한다. 눈썹을 눈동자로 검출하는 오류를 줄이기 위하여, hybrid projection 함수를 이용하여 얼굴 영역에서 눈썹을 검출하고 눈썹이 포함되지 않도록 눈 영역을 설정한다. 눈 영역에서 rank order 필터를 사용하여 눈동자 후보점을 찾고 위치를 보정한다. 두 눈동자 후보점을 기하학적인 제약조건을 기반으로 쌍으로 묶고 각 쌍의 두 눈에 대한 유사도를 정합을 이용하여 측정하여가장작은값을 갖는 쌍을 최종눈동자로 결정한다. BioID 얼굴데이터베이스의 얼굴 영상 700개에 대한 실험 결과 92.4%의 검출율을 얻었으며 기존 방법보다 약 21.5% 개선된 결과를 얻었다.

• Mycobiology
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• 제37권3호
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• pp.230-237
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• 2009

The oyster mushroom (Pleurotus ostreatus) is one of the most important edible mushrooms worldwide. The mechanism of P. ostreatus fruiting body development has been of interest both for the basic understanding of the phenotypic change of the mycelium-fruiting body and to improve breeding of the mushrooms. Based on our previous publication of P. ostreatus expressed sequence tag database, 1,528 unigene clones were used in macroarray analysis of mycelium, fruiting body and basidiospore developmental stages of P. ostreatus. Gene expression profile databases generated by evaluating expression levels showed that 33, 10, and 94 genes were abundantly expressed in mycelium, fruiting body and basidiospore developmental stages, respectively. Among them, the genes specifically expressed in the fruiting body stage were further analyzed by reverse transcription-polymerase chain reaction and Northern blot to investigate temporal and spatial expression patterns. These results provide useful information for future studies of edible mushroom development.

• BMB Reports
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• 제37권4호
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• pp.474-479
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• 2004

The expressed sequence tag (EST) effort in Toxoplasma gondii has generated a substantial amount of gene information. To exploit this valuable resource, we chose to study tgd057, a novel gene identified by a large number of ESTs that otherwise show no significant match to known sequences in the database. Northern analysis showed that tgd057 is transcribed in this tachyzoite. The complete cDNA sequence of tgd057 is 1169 bp in length. Sequence analysis revealed that tgd057 possibly adopts two polyadenylation sites, utilizes the fourth in-frame ATG for translation initiation, and codes for a secretory protein. The longest open reading frame for the tgd057 gene was cloned and expressed as a recombinant protein (rd57) in Escherichia coli. Western analysis revealed that serum against rd57 recognized a molecule of ~21 kDa in the tachyzoite protein extract. This suggests that the tgd057 gene is expressed in vivo in the parasite.

• 한국축산식품학회지
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• 제41권2호
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• pp.335-342
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• 2021

Vitamin B12 deficiency may lead to serious health issues in both infants and adults. A simple analytical method involving sample pretreatment with enzyme, followed by cyanide addition under acidic conditions; separation on an immunoaffinity column; and high-performance liquid chromatography (HPLC) was developed for the rapid detection and quantitation of vitamin B12 in powdered milk. Detection limit and powdered milk recovery were determined by quantitative analysis. The limits of detection and quantitation were 2.71 and 8.21 ㎍/L, respectively. Relative standard deviations of the intra-day and inter-day precisions varied in the ranges of 0.98%-5.31% and 2.16%-3.90%, respectively. Recovery of the analysis varied in the range of 83.41%-106.57%, suggesting that the values were acceptable. Additionally, vitamin B12 content and recovery in SRM 1849a were 54.10 ㎍/kg and 112.24%, respectively. Our results suggested that the analytical method, including the sample pretreatment step, was valid. This analytical method can be implemented in many laboratory-scale experiments that seek to save time and labor. Therefore, this study shows that immunoaffinity-HPLC/ultraviolet is an acceptable technique for constructing a reliable database on vitamin B12 in powdered milk containing starch as well as protein and/or fat in high amounts.

• Journal of Species Research
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• 제12권3호
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• pp.229-239
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• 2023

We isolated and identified 25 unrecorded bacterial species belonging to the phylum Actinomycetota found in the Republic of Korea. Sequence comparison of 16S rRNA was performed using the NCBI BLAST and EzBioCloud database to identify 25 species, which had a 16S rRNA gene sequence similarity of >98.8% and were allocated as unrecorded species in the Republic of Korea. Among the 25 unrecorded bacterial strains, Streptomyces was the most common with nine species, followed by Leifsonia with two species. Isoptericola, Nocardioides, Dermacoccus, Sinomonas, Patulibacter, Marmoricola, Allobranchiibius, Aldersonia, Actinokineospora, Agromyces, Aeromicrobium, Cellulomonas, and Gordonia with one species each were also found. Twenty-five unrecorded species were excavated in various environments, such as tidal flats, ferns, soil, pine cones, moss, mud, wetlands, and plants. These isolates were characterized on the basis of their phylogenetic, biochemical properties, and morphological data, and species descriptions were provided.